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Items: 42

1.

Expression profiling. Combinatorial labeling of single cells for gene expression cytometry.

Fan HC, Fu GK, Fodor SP.

Science. 2015 Feb 6;347(6222):1258367. doi: 10.1126/science.1258367.

2.

Digital encoding of cellular mRNAs enabling precise and absolute gene expression measurement by single-molecule counting.

Fu GK, Wilhelmy J, Stern D, Fan HC, Fodor SP.

Anal Chem. 2014 Mar 18;86(6):2867-70. doi: 10.1021/ac500459p. Epub 2014 Mar 4.

3.

Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations.

Fu GK, Xu W, Wilhelmy J, Mindrinos MN, Davis RW, Xiao W, Fodor SP.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1891-6. doi: 10.1073/pnas.1323732111. Epub 2014 Jan 21.

4.

Counting individual DNA molecules by the stochastic attachment of diverse labels.

Fu GK, Hu J, Wang PH, Fodor SP.

Proc Natl Acad Sci U S A. 2011 May 31;108(22):9026-31. doi: 10.1073/pnas.1017621108. Epub 2011 May 11.

5.

Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.

Matsuzaki H, Dong S, Loi H, Di X, Liu G, Hubbell E, Law J, Berntsen T, Chadha M, Hui H, Yang G, Kennedy GC, Webster TA, Cawley S, Walsh PS, Jones KW, Fodor SP, Mei R.

Nat Methods. 2004 Nov;1(2):109-11.

PMID:
15782172
6.

Large-scale genotyping of complex DNA.

Kennedy GC, Matsuzaki H, Dong S, Liu WM, Huang J, Liu G, Su X, Cao M, Chen W, Zhang J, Liu W, Yang G, Di X, Ryder T, He Z, Surti U, Phillips MS, Boyce-Jacino MT, Fodor SP, Jones KW.

Nat Biotechnol. 2003 Oct;21(10):1233-7. Epub 2003 Sep 7.

PMID:
12960966
7.

Large-scale transcriptional activity in chromosomes 21 and 22.

Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL, Fodor SP, Gingeras TR.

Science. 2002 May 3;296(5569):916-9.

8.

Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21.

Patil N, Berno AJ, Hinds DA, Barrett WA, Doshi JM, Hacker CR, Kautzer CR, Lee DH, Marjoribanks C, McDonough DP, Nguyen BT, Norris MC, Sheehan JB, Shen N, Stern D, Stokowski RP, Thomas DJ, Trulson MO, Vyas KR, Frazer KA, Fodor SP, Cox DR.

Science. 2001 Nov 23;294(5547):1719-23.

9.

Evolutionarily conserved sequences on human chromosome 21.

Frazer KA, Sheehan JB, Stokowski RP, Chen X, Hosseini R, Cheng JF, Fodor SP, Cox DR, Patil N.

Genome Res. 2001 Oct;11(10):1651-9.

10.

Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays.

Hacia JG, Fan JB, Ryder O, Jin L, Edgemon K, Ghandour G, Mayer RA, Sun B, Hsie L, Robbins CM, Brody LC, Wang D, Lander ES, Lipshutz R, Fodor SP, Collins FS.

Nat Genet. 1999 Jun;22(2):164-7.

PMID:
10369258
11.

Discrimination of DNA hybridization using chemical force microscopy.

Mazzola LT, Frank CW, Fodor SP, Mosher C, Lartius R, Henderson E.

Biophys J. 1999 Jun;76(6):2922-33.

12.

High density synthetic oligonucleotide arrays.

Lipshutz RJ, Fodor SP, Gingeras TR, Lockhart DJ.

Nat Genet. 1999 Jan;21(1 Suppl):20-4. Review.

PMID:
9915496
13.

Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arrays.

Hacia JG, Sun B, Hunt N, Edgemon K, Mosbrook D, Robbins C, Fodor SP, Tagle DA, Collins FS.

Genome Res. 1998 Dec;8(12):1245-58.

14.

Enhanced high density oligonucleotide array-based sequence analysis using modified nucleoside triphosphates.

Hacia JG, Woski SA, Fidanza J, Edgemon K, Hunt N, McGall G, Fodor SP, Collins FS.

Nucleic Acids Res. 1998 Nov 1;26(21):4975-82.

15.

Two color hybridization analysis using high density oligonucleotide arrays and energy transfer dyes.

Hacia JG, Edgemon K, Sun B, Stern D, Fodor SP, Collins FS.

Nucleic Acids Res. 1998 Aug 15;26(16):3865-6.

16.

Evolutionary sequence comparisons using high-density oligonucleotide arrays.

Hacia JG, Makalowski W, Edgemon K, Erdos MR, Robbins CM, Fodor SP, Brody LC, Collins FS.

Nat Genet. 1998 Feb;18(2):155-8.

PMID:
9462745
17.

Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis.

Hacia JG, Brody LC, Chee MS, Fodor SP, Collins FS.

Nat Genet. 1996 Dec;14(4):441-7.

PMID:
8944024
18.

Accessing genetic information with high-density DNA arrays.

Chee M, Yang R, Hubbell E, Berno A, Huang XC, Stern D, Winkler J, Lockhart DJ, Morris MS, Fodor SP.

Science. 1996 Oct 25;274(5287):610-4.

PMID:
8849452
19.

Using oligonucleotide probe arrays to access genetic diversity.

Lipshutz RJ, Morris D, Chee M, Hubbell E, Kozal MJ, Shah N, Shen N, Yang R, Fodor SP.

Biotechniques. 1995 Sep;19(3):442-7. Review.

PMID:
7495558
20.

Imaging biomolecule arrays by atomic force microscopy.

Mazzola LT, Fodor SP.

Biophys J. 1995 May;68(5):1653-60.

21.

Light-generated oligonucleotide arrays for rapid DNA sequence analysis.

Pease AC, Solas D, Sullivan EJ, Cronin MT, Holmes CP, Fodor SP.

Proc Natl Acad Sci U S A. 1994 May 24;91(11):5022-6.

22.

Applications of combinatorial technologies to drug discovery. 2. Combinatorial organic synthesis, library screening strategies, and future directions.

Gordon EM, Barrett RW, Dower WJ, Fodor SP, Gallop MA.

J Med Chem. 1994 May 13;37(10):1385-401. Review. No abstract available.

PMID:
8182695
23.

Applications of combinatorial technologies to drug discovery. 1. Background and peptide combinatorial libraries.

Gallop MA, Barrett RW, Dower WJ, Fodor SP, Gordon EM.

J Med Chem. 1994 Apr 29;37(9):1233-51. Review. No abstract available.

PMID:
8176700
24.

Combinatorial chemistry--applications of light-directed chemical synthesis.

Jacobs JW, Fodor SP.

Trends Biotechnol. 1994 Jan;12(1):19-26. Review.

PMID:
7765338
25.

An unnatural biopolymer.

Cho CY, Moran EJ, Cherry SR, Stephans JC, Fodor SP, Adams CL, Sundaram A, Jacobs JW, Schultz PG.

Science. 1993 Sep 3;261(5126):1303-5.

PMID:
7689747
26.

Multiplexed biochemical assays with biological chips.

Fodor SP, Rava RP, Huang XC, Pease AC, Holmes CP, Adams CL.

Nature. 1993 Aug 5;364(6437):555-6.

PMID:
7687751
27.

Resonance Raman spectra of bacteriorhodopsin mutants with substitutions at Asp-85, Asp-96, and Arg-82.

Lin SW, Fodor SP, Miercke LJ, Shand RF, Betlach MC, Stroud RM, Mathies RA.

Photochem Photobiol. 1991 Mar;53(3):341-6.

PMID:
2062880
28.

Light-directed, spatially addressable parallel chemical synthesis.

Fodor SP, Read JL, Pirrung MC, Stryer L, Lu AT, Solas D.

Science. 1991 Feb 15;251(4995):767-73.

PMID:
1990438
29.

Resonance Raman analysis of the Pr and Pfr forms of phytochrome.

Fodor SP, Lagarias JC, Mathies RA.

Biochemistry. 1990 Dec 18;29(50):11141-6.

PMID:
2271702
30.

Ultraviolet resonance Raman spectroscopy of bacteriorhodopsin.

Netto MM, Fodor SP, Mathies RA.

Photochem Photobiol. 1990 Sep;52(3):605-7.

PMID:
2284352
31.

Structure of the retinal chromophore in sensory rhodopsin I from resonance Raman spectroscopy.

Fodor SP, Gebhard R, Lugtenburg J, Bogomolni RA, Mathies RA.

J Biol Chem. 1989 Nov 5;264(31):18280-3.

32.

Bacteriorhodopsin's M412 intermediate contains a 13-cis, 14-s-trans, 15-anti-retinal Schiff base chromophore.

Ames JB, Fodor SP, Gebhard R, Raap J, van den Berg EM, Lugtenburg J, Mathies RA.

Biochemistry. 1989 May 2;28(9):3681-7.

PMID:
2751988
33.

Halorhodopsin and sensory rhodopsin contain a C6-C7 s-trans retinal chromophore.

Baselt DR, Fodor SP, van der Steen R, Lugtenburg J, Bogomolni RA, Mathies RA.

Biophys J. 1989 Jan;55(1):193-6.

34.

Chromophore structure in bacteriorhodopsin's N intermediate: implications for the proton-pumping mechanism.

Fodor SPA, Ames JB, Gebhard R, van den Berg EMM, Stoeckenius W, Lugtenburg J, Mathies RA.

Biochemistry. 1988 Sep 6;27(18):7097-101.

PMID:
2848578
35.

Resonance Raman spectra of the Pr-form of phytochrome.

Fodor SP, Lagarias JC, Mathies RA.

Photochem Photobiol. 1988 Aug;48(2):129-36. No abstract available.

PMID:
3222324
36.

Bacteriorhodopsin's L550 intermediate contains a C14-C15 s-trans-retinal chromophore.

Fodor SP, Pollard WT, Gebhard R, van den Berg EM, Lugtenburg J, Mathies RA.

Proc Natl Acad Sci U S A. 1988 Apr;85(7):2156-60.

37.

Ultraviolet resonance Raman spectroscopy as a probe of protein structure in the fd virus.

Grygon CA, Perno JR, Fodor SP, Spiro TG.

Biotechniques. 1988 Jan;6(1):50-5.

PMID:
3273393
38.

Structure of the retinal chromophore in the hRL intermediate of halorhodopsin from resonance raman spectroscopy.

Fodor SP, Bogomolni RA, Mathies RA.

Biochemistry. 1987 Oct 20;26(21):6775-8.

PMID:
3427042
39.

Comparison of lipid/gramicidin dispersions and cocrystals by Raman scattering.

Short KW, Wallace BA, Myers RA, Fodor SP, Dunker AK.

Biochemistry. 1987 Jan 27;26(2):557-62.

PMID:
2435320
40.

Raman spectroscopic elucidation of DNA backbone conformations for poly(dG-dT).poly(dA-dC) and poly(dA-dT).poly(dA-dT) in CsF solution.

Fodor SP, Starr PA, Spiro TG.

Biopolymers. 1985 Aug;24(8):1493-500. No abstract available.

PMID:
4041547
41.

Lipid-dependent Structural Changes of an Amphomorphic Membrane Protein.

Dunker AK, Fodor SP, Williams RW.

Biophys J. 1982 Jan;37(1):201-3. No abstract available.

42.

Lipid-tail group dependent structure of the fd gene 8 protein.

Fodor SP, Dunker AK, Ng YC, Carsten D, Williams RW.

Prog Clin Biol Res. 1981;64:441-55.

PMID:
7330058

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