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Items: 8

1.

Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila.

Ulianov SV, Doronin SA, Khrameeva EE, Kos PI, Luzhin AV, Starikov SS, Galitsyna AA, Nenasheva VV, Ilyin AA, Flyamer IM, Mikhaleva EA, Logacheva MD, Gelfand MS, Chertovich AV, Gavrilov AA, Razin SV, Shevelyov YY.

Nat Commun. 2019 Mar 12;10(1):1176. doi: 10.1038/s41467-019-09185-y.

2.

Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.

Luzhin AV, Flyamer IM, Khrameeva EE, Ulianov SV, Razin SV, Gavrilov AA.

J Cell Biochem. 2019 Mar;120(3):4494-4503. doi: 10.1002/jcb.27737. Epub 2018 Sep 27.

PMID:
30260021
3.

Single-nucleus Hi-C of mammalian oocytes and zygotes.

Gassler J, Flyamer IM, Tachibana K.

Methods Cell Biol. 2018;144:389-407. doi: 10.1016/bs.mcb.2018.03.032. Epub 2018 Apr 30.

PMID:
29804679
4.

A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.

Gassler J, Brandão HB, Imakaev M, Flyamer IM, Ladstätter S, Bickmore WA, Peters JM, Mirny LA, Tachibana K.

EMBO J. 2017 Dec 15;36(24):3600-3618. doi: 10.15252/embj.201798083. Epub 2017 Dec 7.

5.

Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure.

Ulianov SV, Galitsyna AA, Flyamer IM, Golov AK, Khrameeva EE, Imakaev MV, Abdennur NA, Gelfand MS, Gavrilov AA, Razin SV.

Epigenetics Chromatin. 2017 Jul 11;10(1):35. doi: 10.1186/s13072-017-0142-4.

6.

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition.

Flyamer IM, Gassler J, Imakaev M, Brandão HB, Ulianov SV, Abdennur N, Razin SV, Mirny LA, Tachibana-Konwalski K.

Nature. 2017 Apr 6;544(7648):110-114. doi: 10.1038/nature21711. Epub 2017 Mar 29.

7.

Evolution of the Genome 3D Organization: Comparison of Fused and Segregated Globin Gene Clusters.

Kovina AP, Petrova NV, Gushchanskaya ES, Dolgushin KV, Gerasimov ES, Galitsyna AA, Penin AA, Flyamer IM, Ioudinkova ES, Gavrilov AA, Vassetzky YS, Ulianov SV, Iarovaia OV, Razin SV.

Mol Biol Evol. 2017 Jun 1;34(6):1492-1504. doi: 10.1093/molbev/msx100.

PMID:
28333290
8.

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.

Ulianov SV, Khrameeva EE, Gavrilov AA, Flyamer IM, Kos P, Mikhaleva EA, Penin AA, Logacheva MD, Imakaev MV, Chertovich A, Gelfand MS, Shevelyov YY, Razin SV.

Genome Res. 2016 Jan;26(1):70-84. doi: 10.1101/gr.196006.115. Epub 2015 Oct 30.

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