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Items: 28

1.

Computational Characterization of the mtORF of Pocilloporid Corals: Insights into Protein Structure and Function in Stylophora Lineages from Contrasting Environments.

Banguera-Hinestroza E, Ferrada E, Sawall Y, Flot JF.

Genes (Basel). 2019 Apr 27;10(5). pii: E324. doi: 10.3390/genes10050324.

2.

Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.

Limasset A, Flot JF, Peterlongo P.

Bioinformatics. 2019 Feb 20. pii: btz102. doi: 10.1093/bioinformatics/btz102. [Epub ahead of print]

PMID:
30785192
3.

The hitchhiker's guide to single-locus species delimitation.

Dellicour S, Flot JF.

Mol Ecol Resour. 2018 Nov;18(6):1234-1246. doi: 10.1111/1755-0998.12908. Epub 2018 Jul 5.

PMID:
29847023
4.

Quantification of complex modular architecture in plants.

Reeb C, Kaandorp J, Jansson F, Puillandre N, Dubuisson JY, Cornette R, Jabbour F, Coudert Y, Patiño J, Flot JF, Vanderpoorten A.

New Phytol. 2018 Apr;218(2):859-872. doi: 10.1111/nph.15045. Epub 2018 Feb 22.

5.

Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals.

Voolstra CR, Li Y, Liew YJ, Baumgarten S, Zoccola D, Flot JF, Tambutté S, Allemand D, Aranda M.

Sci Rep. 2017 Dec 14;7(1):17583. doi: 10.1038/s41598-017-17484-x.

6.

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.

Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, Eibner C, Extavour CG, Funch P, Garb J, Gonzalez LB, Gonzalez VL, Griffiths-Jones S, Han Y, Hayashi C, Hilbrant M, Hughes DST, Janssen R, Lee SL, Maeso I, Murali SC, Muzny DM, Nunes da Fonseca R, Paese CLB, Qu J, Ronshaugen M, Schomburg C, Schönauer A, Stollewerk A, Torres-Oliva M, Turetzek N, Vanthournout B, Werren JH, Wolff C, Worley KC, Bucher G, Gibbs RA, Coddington J, Oda H, Stanke M, Ayoub NA, Prpic NM, Flot JF, Posnien N, Richards S, McGregor AP.

BMC Biol. 2017 Jul 31;15(1):62. doi: 10.1186/s12915-017-0399-x.

7.

A genomic glance through the fog of plasticity and diversification in Pocillopora.

Johnston EC, Forsman ZH, Flot JF, Schmidt-Roach S, Pinzón JH, Knapp ISS, Toonen RJ.

Sci Rep. 2017 Jul 20;7(1):5991. doi: 10.1038/s41598-017-06085-3.

8.

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

Blanc-Mathieu R, Perfus-Barbeoch L, Aury JM, Da Rocha M, Gouzy J, Sallet E, Martin-Jimenez C, Bailly-Bechet M, Castagnone-Sereno P, Flot JF, Kozlowski DK, Cazareth J, Couloux A, Da Silva C, Guy J, Kim-Jo YJ, Rancurel C, Schiex T, Abad P, Wincker P, Danchin EGJ.

PLoS Genet. 2017 Jun 8;13(6):e1006777. doi: 10.1371/journal.pgen.1006777. eCollection 2017 Jun.

9.

Response to Signorovitch et al.

Flot JF, Debortoli N, Hallet B, Van Doninck K.

Curr Biol. 2016 Aug 22;26(16):R755. doi: 10.1016/j.cub.2016.06.052.

10.

Genetic Exchange among Bdelloid Rotifers Is More Likely Due to Horizontal Gene Transfer Than to Meiotic Sex.

Debortoli N, Li X, Eyres I, Fontaneto D, Hespeels B, Tang CQ, Flot JF, Van Doninck K.

Curr Biol. 2016 Mar 21;26(6):723-32. doi: 10.1016/j.cub.2016.01.031. Epub 2016 Mar 3.

11.

Species Delimitation's Coming of Age.

Flot JF.

Syst Biol. 2015 Nov;64(6):897-9. doi: 10.1093/sysbio/syv071. Epub 2015 Sep 29. No abstract available.

PMID:
26420142
12.

Against All Odds: Trehalose-6-Phosphate Synthase and Trehalase Genes in the Bdelloid Rotifer Adineta vaga Were Acquired by Horizontal Gene Transfer and Are Upregulated during Desiccation.

Hespeels B, Li X, Flot JF, Pigneur LM, Malaisse J, Da Silva C, Van Doninck K.

PLoS One. 2015 Jul 10;10(7):e0131313. doi: 10.1371/journal.pone.0131313. eCollection 2015.

13.

Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures.

Flot JF, Marie-Nelly H, Koszul R.

FEBS Lett. 2015 Oct 7;589(20 Pt A):2966-74. doi: 10.1016/j.febslet.2015.04.034. Epub 2015 Apr 29. Review.

14.

Morphological evolution of coexisting amphipod species pairs from sulfidic caves suggests competitive interactions and character displacement, but no environmental filtering and convergence.

Fišer C, Luštrik R, Sarbu S, Flot JF, Trontelj P.

PLoS One. 2015 Apr 23;10(4):e0123535. doi: 10.1371/journal.pone.0123535. eCollection 2015.

15.

Delimiting Species-Poor Data Sets using Single Molecular Markers: A Study of Barcode Gaps, Haplowebs and GMYC.

Dellicour S, Flot JF.

Syst Biol. 2015 Nov;64(6):900-8. doi: 10.1093/sysbio/syu130. Epub 2015 Jan 19.

PMID:
25601944
16.

High-quality genome (re)assembly using chromosomal contact data.

Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, Parodi DP, Syan S, Guillén N, Margeot A, Zimmer C, Koszul R.

Nat Commun. 2014 Dec 17;5:5695. doi: 10.1038/ncomms6695.

17.

Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms.

Marbouty M, Cournac A, Flot JF, Marie-Nelly H, Mozziconacci J, Koszul R.

Elife. 2014 Dec 17;3:e03318. doi: 10.7554/eLife.03318.

18.

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

GIGA Community of Scientists, Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X.

J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084.

19.

Niphargus-Thiothrix associations may be widespread in sulphidic groundwater ecosystems: evidence from southeastern Romania.

Flot JF, Bauermeister J, Brad T, Hillebrand-Voiculescu A, Sarbu SM, Dattagupta S.

Mol Ecol. 2014 Mar;23(6):1405-17. doi: 10.1111/mec.12461. Epub 2013 Sep 14.

20.

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.

Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthélémy RM, Bast J, Bazykin GA, Chabrol O, Couloux A, Da Rocha M, Da Silva C, Gladyshev E, Gouret P, Hallatschek O, Hecox-Lea B, Labadie K, Lejeune B, Piskurek O, Poulain J, Rodriguez F, Ryan JF, Vakhrusheva OA, Wajnberg E, Wirth B, Yushenova I, Kellis M, Kondrashov AS, Mark Welch DB, Pontarotti P, Weissenbach J, Wincker P, Jaillon O, Van Doninck K.

Nature. 2013 Aug 22;500(7463):453-7. doi: 10.1038/nature12326. Epub 2013 Jul 21.

21.
22.

Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence, morphological stasis or interspecific hybridization?

Flot JF, Blanchot J, Charpy L, Cruaud C, Licuanan WY, Nakano Y, Payri C, Tillier S.

BMC Ecol. 2011 Oct 4;11:22. doi: 10.1186/1472-6785-11-22.

24.

Unsuspected diversity of Niphargus amphipods in the chemoautotrophic cave ecosystem of Frasassi, central Italy.

Flot JF, Wörheide G, Dattagupta S.

BMC Evol Biol. 2010 Jun 9;10:171. doi: 10.1186/1471-2148-10-171.

25.

seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments.

Flot JF.

Mol Ecol Resour. 2010 Jan;10(1):162-6. doi: 10.1111/j.1755-0998.2009.02732.x. Epub 2009 Jun 15.

PMID:
21565002
26.

Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology.

Flot JF, Magalon H, Cruaud C, Couloux A, Tillier S.

C R Biol. 2008 Mar;331(3):239-47. doi: 10.1016/j.crvi.2007.12.003. Epub 2008 Jan 28.

28.

[Value of RP-6549 or alimemazine for premedication in bronchography].

LEDOUX-LEBARD G, HEITZ F, FLOT JL, CORNU J.

Sem Med Prof Med Soc. 1961 Jan 8;37:138-40. French. No abstract available.

PMID:
13760199

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