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Items: 1 to 50 of 86

1.

Moving Droplets in 3D Using Light.

Xiao Y, Zarghami S, Wagner K, Wagner P, Gordon KC, Florea L, Diamond D, Officer DL.

Adv Mater. 2018 Jul 8:e1801821. doi: 10.1002/adma.201801821. [Epub ahead of print]

PMID:
29984459
2.

Micro-Capillary Coatings Based on Spiropyran Polymeric Brushes for Metal Ion Binding, Detection, and Release in Continuous Flow.

Dunne A, Delaney C, McKeon A, Nesterenko P, Paull B, Benito-Lopez F, Diamond D, Florea L.

Sensors (Basel). 2018 Apr 4;18(4). pii: E1083. doi: 10.3390/s18041083.

3.

Photoswitchable Layer-by-Layer Coatings Based on Photochromic Polynorbornenes Bearing Spiropyran Side Groups.

Campos PP, Dunne A, Delaney C, Moloney C, Moulton SE, Benito-Lopez F, Ferreira M, Diamond D, Florea L.

Langmuir. 2018 Apr 10;34(14):4210-4216. doi: 10.1021/acs.langmuir.8b00137. Epub 2018 Mar 30.

PMID:
29553744
4.

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.

Afsari B, Guo T, Considine M, Florea L, Kagohara LT, Stein-O'Brien GL, Kelley D, Flam E, Zambo KD, Ha PK, Geman D, Ochs MF, Califano JA, Gaykalova DA, Favorov AV, Fertig EJ.

Bioinformatics. 2018 Jun 1;34(11):1859-1867. doi: 10.1093/bioinformatics/bty004.

PMID:
29342249
5.

Germline Mutations in DNA Repair Genes in Lung Adenocarcinoma.

Parry EM, Gable DL, Stanley SE, Khalil SE, Antonescu V, Florea L, Armanios M.

J Thorac Oncol. 2017 Nov;12(11):1673-1678. doi: 10.1016/j.jtho.2017.08.011. Epub 2017 Aug 24.

PMID:
28843361
6.

Glucose Sensing for Diabetes Monitoring: Recent Developments.

Bruen D, Delaney C, Florea L, Diamond D.

Sensors (Basel). 2017 Aug 12;17(8). pii: E1866. doi: 10.3390/s17081866. Review.

7.

Impedance spectroscopy for monosaccharides detection using responsive hydrogel modified paper-based electrodes.

Daikuzono CM, Delaney C, Tesfay H, Florea L, Oliveira ON, Morrin A, Diamond D.

Analyst. 2017 Mar 27;142(7):1133-1139. doi: 10.1039/c6an02571d.

PMID:
28300229
8.

Rascaf: Improving Genome Assembly with RNA Sequencing Data.

Song L, Shankar DS, Florea L.

Plant Genome. 2016 Nov;9(3). doi: 10.3835/plantgenome2016.03.0027.

9.

Potential Impacts to Groundwater from Ground-Coupled Geothermal Heat Pumps in District Scale.

Florea LJ, Hart D, Tinjum J, Choi C.

Ground Water. 2017 Jan;55(1):8-9. doi: 10.1111/gwat.12484. Epub 2016 Nov 17. No abstract available.

PMID:
27859098
10.

Molecular Triage of Premalignant Lesions in Liquid-Based Cervical Cytology and Circulating Cell-Free DNA from Urine, Using a Panel of Methylated Human Papilloma Virus and Host Genes.

Guerrero-Preston R, Valle BL, Jedlicka A, Turaga N, Folawiyo O, Pirini F, Lawson F, Vergura A, Noordhuis M, Dziedzic A, Pérez G, Renehan M, Guerrero-Diaz C, De Jesus Rodríguez E, Diaz-Montes T, Rodríguez Orengo J, Méndez K, Romaguera J, Trock BJ, Florea L, Sidransky D.

Cancer Prev Res (Phila). 2016 Dec;9(12):915-924. Epub 2016 Sep 26.

11.

CLASS2: accurate and efficient splice variant annotation from RNA-seq reads.

Song L, Sabunciyan S, Florea L.

Nucleic Acids Res. 2016 Jun 2;44(10):e98. doi: 10.1093/nar/gkw158. Epub 2016 Mar 14.

12.

Poly(Ionic Liquid) Semi-Interpenetrating Network Multi-Responsive Hydrogels.

Tudor A, Florea L, Gallagher S, Burns J, Diamond D.

Sensors (Basel). 2016 Feb 6;16(2):219. doi: 10.3390/s16020219.

13.

ENDOTHELIAL DYSFUNCTION ASSESSED BY LASER DOPPLER POST-OCCLUSIVE HYPEREMIA IN CHRONIC KIDNEY DISEASE PATIENTS.

Busila I, Onofriescu M, Gramaticu A, Hogas S, Covic A, Florea L.

Rev Med Chir Soc Med Nat Iasi. 2015 Oct-Dec;119(4):1001-9.

PMID:
26793841
14.

Three-Dimensional Printing: Transformative Technology for Experimental Groundwater Research.

Hasiuk FJ, Florea LJ, Sukop MC.

Ground Water. 2016 Mar;54(2):157-8. doi: 10.1111/gwat.12394. Epub 2015 Dec 29. No abstract available.

PMID:
26714140
15.

Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads.

Song L, Florea L.

Gigascience. 2015 Oct 19;4:48. doi: 10.1186/s13742-015-0089-y. eCollection 2015.

16.

Overhydration, Cardiac Function and Survival in Hemodialysis Patients.

Onofriescu M, Siriopol D, Voroneanu L, Hogas S, Nistor I, Apetrii M, Florea L, Veisa G, Mititiuc I, Kanbay M, Sascau R, Covic A.

PLoS One. 2015 Aug 14;10(8):e0135691. doi: 10.1371/journal.pone.0135691. eCollection 2015.

17.

Viral non-coding RNA inhibits HNF4α expression in HCV associated hepatocellular carcinoma.

Wang Z, Ceniccola K, Florea L, Wang BD, Lee NH, Kumar A.

Infect Agent Cancer. 2015 Jul 8;10:19. doi: 10.1186/s13027-015-0014-0. eCollection 2015.

18.

Self-propelled chemotactic ionic liquid droplets.

Francis W, Fay C, Florea L, Diamond D.

Chem Commun (Camb). 2015 Feb 11;51(12):2342-4. doi: 10.1039/c4cc09214g.

PMID:
25562698
19.
20.

Morphological changes of the peritoneal membrane in patients with long-term dialysis.

Tăranu T, Florea L, Păduraru D, Georgescu SO, Frâncu LL, Stan CI.

Rom J Morphol Embryol. 2014;55(3):927-32.

21.

Photo-chemopropulsion--light-stimulated movement of microdroplets.

Florea L, Wagner K, Wagner P, Wallace GG, Benito-Lopez F, Officer DL, Diamond D.

Adv Mater. 2014 Nov 19;26(43):7339-45. doi: 10.1002/adma.201403007. Epub 2014 Sep 18.

PMID:
25236879
22.

Loss of nuclear PTEN in HCV-infected human hepatocytes.

Bao W, Florea L, Wu N, Wang Z, Banaudha K, Qian J, Houzet L, Kumar R, Kumar A.

Infect Agent Cancer. 2014 Jul 18;9:23. doi: 10.1186/1750-9378-9-23. eCollection 2014.

23.

Photoswitchable ratchet surface topographies based on self-protonating spiropyran-NIPAAM hydrogels.

Stumpel JE, Ziółkowski B, Florea L, Diamond D, Broer DJ, Schenning AP.

ACS Appl Mater Interfaces. 2014 May 28;6(10):7268-74. doi: 10.1021/am500542f. Epub 2014 May 16.

PMID:
24813057
24.

Swelling and shrinking properties of thermo-responsive polymeric ionic liquid hydrogels with embedded linear pNIPAAM.

Gallagher S, Florea L, Fraser KJ, Diamond D.

Int J Mol Sci. 2014 Mar 27;15(4):5337-49. doi: 10.3390/ijms15045337.

25.

Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues.

Florea L, Song L, Salzberg SL.

Version 2. F1000Res. 2013 Sep 16 [revised 2013 Jan 1];2:188. doi: 10.12688/f1000research.2-188.v2. eCollection 2013.

26.

Genome-guided transcriptome assembly in the age of next-generation sequencing.

Florea LD, Salzberg SL.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1234-40. Review.

27.

Ionic liquid modulation of swelling and LCST behavior of N-isopropylacrylamide polymer gels.

Gallagher S, Kavanagh A, Zíołkowski B, Florea L, MacFarlane DR, Fraser K, Diamond D.

Phys Chem Chem Phys. 2014 Feb 28;16(8):3610-6. doi: 10.1039/c3cp53397b.

PMID:
24413336
28.

Self-assembled solvato-morphologically controlled photochromic crystals.

Florea L, Scarmagnani S, Benito-Lopez F, Diamond D.

Chem Commun (Camb). 2014 Jan 28;50(8):924-6. doi: 10.1039/c3cc46699j.

PMID:
24169623
29.

CLASS: constrained transcript assembly of RNA-seq reads.

Song L, Florea L.

BMC Bioinformatics. 2013;14 Suppl 5:S14. doi: 10.1186/1471-2105-14-S5-S14. Epub 2013 Apr 10.

30.

RNA sequencing of cancer reveals novel splicing alterations.

Eswaran J, Horvath A, Godbole S, Reddy SD, Mudvari P, Ohshiro K, Cyanam D, Nair S, Fuqua SA, Polyak K, Florea LD, Kumar R.

Sci Rep. 2013;3:1689. doi: 10.1038/srep01689.

31.

Temperature and pH triggered release characteristics of water/fluorescein from 1-ethyl-3-methylimidazolium ethylsulfate based ionogels.

Gallagher S, Kavanagh A, Florea L, MacFarlane DR, Fraser KJ, Diamond D.

Chem Commun (Camb). 2013 May 21;49(41):4613-5. doi: 10.1039/c3cc41272e. Epub 2013 Apr 11.

PMID:
23579593
32.

Spiropyran polymeric microcapillary coatings for photodetection of solvent polarity.

Florea L, McKeon A, Diamond D, Benito-Lopez F.

Langmuir. 2013 Feb 26;29(8):2790-7. doi: 10.1021/la304985p. Epub 2013 Feb 14.

PMID:
23379723
33.

Dynamic pH mapping in microfluidic devices by integrating adaptive coatings based on polyaniline with colorimetric imaging techniques.

Florea L, Fay C, Lahiff E, Phelan T, O'Connor NE, Corcoran B, Diamond D, Benito-Lopez F.

Lab Chip. 2013 Mar 21;13(6):1079-85. doi: 10.1039/c2lc41065f.

PMID:
23358572
34.

Polyaniline coated micro-capillaries for continuous flow analysis of aqueous solutions.

Florea L, Diamond D, Benito-Lopez F.

Anal Chim Acta. 2013 Jan 8;759:1-7. doi: 10.1016/j.aca.2012.11.027. Epub 2012 Nov 27.

PMID:
23260671
35.

Performances of an 80-200 kV microscope employing a cold-FEG and an aberration-corrected objective lens.

Ricolleau C, Nelayah J, Oikawa T, Kohno Y, Braidy N, Wang G, Hue F, Florea L, Pierron Bohnes V, Alloyeau D.

Microscopy (Oxf). 2013 Apr;62(2):283-93. doi: 10.1093/jmicro/dfs072. Epub 2012 Nov 16.

PMID:
23160361
36.

Transcriptomic landscape of breast cancers through mRNA sequencing.

Eswaran J, Cyanam D, Mudvari P, Reddy SD, Pakala SB, Nair SS, Florea L, Fuqua SA, Godbole S, Kumar R.

Sci Rep. 2012;2:264. doi: 10.1038/srep00264. Epub 2012 Feb 14.

37.

Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies.

Florea L, Souvorov A, Kalbfleisch TS, Salzberg SL.

PLoS One. 2011;6(6):e21400. doi: 10.1371/journal.pone.0021400. Epub 2011 Jun 22.

38.

Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing.

Walenz B, Florea L.

Bioinformatics. 2011 Jul 1;27(13):1869-70. doi: 10.1093/bioinformatics/btr285. Epub 2011 May 6.

39.

MicroRNA silencing of tumor suppressor DLC-1 promotes efficient hepatitis C virus replication in primary human hepatocytes.

Banaudha K, Kaliszewski M, Korolnek T, Florea L, Yeung ML, Jeang KT, Kumar A.

Hepatology. 2011 Jan;53(1):53-61. doi: 10.1002/hep.24016. Epub 2010 Oct 21.

PMID:
20967756
40.

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis.

Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg Le Ann, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, Dong JJ, Evans C, Frederickson KM, Flicek P, Florea L, Folkerts O, Groenen MA, Harkins TT, Herrero J, Hoffmann S, Megens HJ, Jiang A, de Jong P, Kaiser P, Kim H, Kim KW, Kim S, Langenberger D, Lee MK, Lee T, Mane S, Marcais G, Marz M, McElroy AP, Modise T, Nefedov M, Notredame C, Paton IR, Payne WS, Pertea G, Prickett D, Puiu D, Qioa D, Raineri E, Ruffier M, Salzberg SL, Schatz MC, Scheuring C, Schmidt CJ, Schroeder S, Searle SM, Smith EJ, Smith J, Sonstegard TS, Stadler PF, Tafer H, Tu ZJ, Van Tassell CP, Vilella AJ, Williams KP, Yorke JA, Zhang L, Zhang HB, Zhang X, Zhang Y, Reed KM.

PLoS Biol. 2010 Sep 7;8(9). pii: e1000475. doi: 10.1371/journal.pbio.1000475.

41.

Stable isotopic and geochemical variability within shallow groundwater beneath a hardwood hammock and surface water in an adjoining slough (Everglades National Park, Florida, USA).

Florea LJ, McGee DK.

Isotopes Environ Health Stud. 2010 Jun;46(2):190-209. doi: 10.1080/10256016.2010.494770. Erratum in: Isotopes Environ Health Stud. 2010 Sep;46(3):405.

PMID:
20582788
43.

Autologous hematopoietic stem cell transplant in systemic sclerosis: quantitative high resolution computed tomography of the chest scoring.

Launay D, Marjanovic Z, de Bazelaire C, Florea L, Zohar S, Keshtmand H, Deligny C, de Raigniac A, Wells AU, Farge D.

J Rheumatol. 2009 Jul;36(7):1460-3. doi: 10.3899/jrheum.081212. Epub 2009 Jun 16.

PMID:
19531757
44.

Sim4cc: a cross-species spliced alignment program.

Zhou L, Pertea M, Delcher AL, Florea L.

Nucleic Acids Res. 2009 Jun;37(11):e80. doi: 10.1093/nar/gkp319. Epub 2009 May 8.

45.

A whole-genome assembly of the domestic cow, Bos taurus.

Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL.

Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24.

46.

[From retroperitoneal fibrosis to gastric linitis].

Amrouche L, Gornet JM, Lascoux C, George C, Florea L, Farge D, Séréni D, Bourgarit A.

Rev Med Interne. 2009 May;30(5):443-5. doi: 10.1016/j.revmed.2008.08.023. Epub 2009 Mar 9. French.

PMID:
19269719
47.

NMR imaging of fluid exchange between macropores and matrix in eogenetic karst.

Florea LJ, Cunningham KJ, Altobelli S.

Ground Water. 2009 May-Jun;47(3):382-90. doi: 10.1111/j.1745-6584.2008.00526.x. Epub 2008 Dec 16.

PMID:
19210557
48.

Novel splice variants of sFlt1 are upregulated in preeclampsia.

Heydarian M, McCaffrey T, Florea L, Yang Z, Ross MM, Zhou W, Maynard SE.

Placenta. 2009 Mar;30(3):250-5. doi: 10.1016/j.placenta.2008.12.010. Epub 2009 Jan 14. Erratum in: Placenta. 2009 Apr;30(4):377.

PMID:
19147226
49.

Effective cluster-based seed design for cross-species sequence comparisons.

Zhou L, Mihai I, Florea L.

Bioinformatics. 2008 Dec 15;24(24):2926-7. doi: 10.1093/bioinformatics/btn547. Epub 2008 Oct 20.

PMID:
18940827
50.

Diagnostic and therapeutic challenges.

Cohen D, Rambeloarisoa J, Florea L, Leye YM, Deplus S, Gaudric A, Farge-Bancel D, Wu L, Davis J.

Retina. 2009 Jan;29(1):117-20. doi: 10.1097/IAE.0b013e3181863ef7. No abstract available.

PMID:
18784626

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