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Items: 22

1.

Small Molecule Isotope Resolved Formula Enumeration: A Methodology for Assigning Isotopologues and Metabolite Formulas in Fourier Transform Mass Spectra.

Mitchell JM, Flight RM, Moseley HNB.

Anal Chem. 2019 Jul 16;91(14):8933-8940. doi: 10.1021/acs.analchem.9b00748. Epub 2019 Jul 1.

PMID:
31260262
2.

Deregulation of a Network of mRNA and miRNA Genes Reveals That CK2 and MEK Inhibitors May Synergize to Induce Apoptosis KRAS-Active NSCLC.

Gober MK, Flight RM, Lambert J, Moseley H, Stromberg A, Black EP.

Cancer Inform. 2019 May 9;18:1176935119843507. doi: 10.1177/1176935119843507. eCollection 2019.

3.

New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis.

Mitchell JM, Flight RM, Wang QJ, Higashi RM, Fan TW, Lane AN, Moseley HNB.

Metabolomics. 2018 Sep 17;14(10):125. doi: 10.1007/s11306-018-1426-9.

4.

Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer.

Zaytseva YY, Rychahou PG, Le AT, Scott TL, Flight RM, Kim JT, Harris J, Liu J, Wang C, Morris AJ, Sivakumaran TA, Fan T, Moseley H, Gao T, Lee EY, Weiss HL, Heuer TS, Kemble G, Evers M.

Oncotarget. 2018 May 15;9(37):24787-24800. doi: 10.18632/oncotarget.25361. eCollection 2018 May 15.

5.

Perspectives and expectations in structural bioinformatics of metalloproteins.

Yao S, Flight RM, Rouchka EC, Moseley HN.

Proteins. 2017 May;85(5):938-944. doi: 10.1002/prot.25263. Epub 2017 Mar 15.

6.

Aberrant coordination geometries discovered in the most abundant metalloproteins.

Yao S, Flight RM, Rouchka EC, Moseley HN.

Proteins. 2017 May;85(5):885-907. doi: 10.1002/prot.25257. Epub 2017 Mar 7.

7.

Ten Simple Rules for Taking Advantage of Git and GitHub.

Perez-Riverol Y, Gatto L, Wang R, Sachsenberg T, Uszkoreit J, Leprevost Fda V, Fufezan C, Ternent T, Eglen SJ, Katz DS, Pollard TJ, Konovalov A, Flight RM, Blin K, Vizcaíno JA.

PLoS Comput Biol. 2016 Jul 14;12(7):e1004947. doi: 10.1371/journal.pcbi.1004947. eCollection 2016 Jul. No abstract available. Erratum in: PLoS Comput Biol. 2019 Jun 14;15(6):e1007142.

8.

Transcriptional profile of immediate response to ionizing radiation exposure.

Rouchka EC, Flight RM, Fasciotto BH, Estrada R, Eaton JW, Patibandla PK, Waigel SJ, Li D, Kirtley JK, Sethu P, Keynton RS.

Genom Data. 2015 Dec 1;7:82-5. doi: 10.1016/j.gdata.2015.11.027. eCollection 2016 Mar.

9.

Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation.

Nalabothula N, Al-jumaily T, Eteleeb AM, Flight RM, Xiaorong S, Moseley H, Rouchka EC, Fondufe-Mittendorf YN.

PLoS One. 2015 Aug 25;10(8):e0135410. doi: 10.1371/journal.pone.0135410. eCollection 2015.

10.

A less-biased analysis of metalloproteins reveals novel zinc coordination geometries.

Yao S, Flight RM, Rouchka EC, Moseley HN.

Proteins. 2015 Aug;83(8):1470-87. doi: 10.1002/prot.24834. Epub 2015 Jun 13.

11.

An Island-Based Approach for Differential Expression Analysis.

Eteleeb AM, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

ACM Conf Bioinform Comput Biol Biomed Inform (2013). 2013 Dec 31;2013:419-429.

12.

categoryCompare, an analytical tool based on feature annotations.

Flight RM, Harrison BJ, Mohammad F, Bunge MB, Moon LD, Petruska JC, Rouchka EC.

Front Genet. 2014 Apr 29;5:98. doi: 10.3389/fgene.2014.00098. eCollection 2014.

13.
14.

IB4-binding sensory neurons in the adult rat express a novel 3' UTR-extended isoform of CaMK4 that is associated with its localization to axons.

Harrison BJ, Flight RM, Gomes C, Venkat G, Ellis SR, Sankar U, Twiss JL, Rouchka EC, Petruska JC.

J Comp Neurol. 2014 Feb 1;522(2):308-36. doi: 10.1002/cne.23398.

15.

Proceedings of the 12th Annual UT-ORNL-KBRIN Bioinformatics Summit 2013.

Rouchka EC, Flight RM.

BMC Bioinformatics. 2013 Mar 22;14 Suppl 17:A1. No abstract available.

16.

AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.

Mohammad F, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

BMC Bioinformatics. 2012 Sep 12;13:229. doi: 10.1186/1471-2105-13-229.

17.

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011.

Rouchka EC, Flight RM, Homayouni R.

BMC Bioinformatics. 2011;12 Suppl 7:A1. Epub 2011 Aug 5. No abstract available.

18.

Preliminary exploration of time course DNA microarray data with correlation maps.

Flight RM, Wentzell PD.

OMICS. 2010 Feb;14(1):99-107. doi: 10.1089/omi.2009.0096.

PMID:
20141332
19.

Effect of early introduction of microencapsulated diet to larval Atlantic halibut, Hippoglossus hippoglossus L. assessed by microarray analysis.

Murray HM, Lall SP, Rajaselvam R, Boutilier LA, Flight RM, Blanchard B, Colombo S, Mohindra V, Yúfera M, Douglas SE.

Mar Biotechnol (NY). 2010 Apr;12(2):214-29. doi: 10.1007/s10126-009-9211-4. Epub 2009 Jul 18.

PMID:
19618242
20.

Potential bias in GO::TermFinder.

Flight RM, Wentzell PD.

Brief Bioinform. 2009 May;10(3):289-94. doi: 10.1093/bib/bbn054. Epub 2009 Mar 11.

PMID:
19279157
21.

Bootstrap method for the estimation of measurement uncertainty in spotted dual-color DNA microarrays.

Karakach TK, Flight RM, Wentzell PD.

Anal Bioanal Chem. 2007 Dec;389(7-8):2125-41. Epub 2007 Sep 27.

PMID:
17899024
22.

A post-hire evaluation of nurse-conducted preplacement health assessments.

Flight RM, Schussler T.

J Occup Med. 1976 Apr;18(4):231-4. No abstract available.

PMID:
1271125

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