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Diversity and temporal dynamics of primate milk microbiomes.

Muletz-Wolz CR, Kurata NP, Himschoot EA, Wenker ES, Quinn EA, Hinde K, Power ML, Fleischer RC.

Am J Primatol. 2019 Jun 20:e22994. doi: 10.1002/ajp.22994. [Epub ahead of print]


Parthenogenesis in a captive Asian water dragon (Physignathus cocincinus) identified with novel microsatellites.

Miller KL, Castañeda Rico S, Muletz-Wolz CR, Campana MG, McInerney N, Augustine L, Frere C, Peters AM, Fleischer RC.

PLoS One. 2019 Jun 5;14(6):e0217489. doi: 10.1371/journal.pone.0217489. eCollection 2019.


First Report of a Novel Hepatozoon sp. in Giant Pandas (Ailuropoda melanoleuca).

Yu JH, Durrant KL, Liu S, Carlin EP, Wang C, Rodriguez J, Bratthauer A, Walsh T, Valitutto MT, Fine L, Murray S, Fleischer RC.

Ecohealth. 2019 Jun;16(2):338-345. doi: 10.1007/s10393-019-01416-4. Epub 2019 May 30.


North-facing slopes and elevation shape asymmetric genetic structure in the range-restricted salamander Plethodon shenandoah.

Mulder KP, Cortes-Rodriguez N, Campbell Grant EH, Brand A, Fleischer RC.

Ecol Evol. 2019 Apr 16;9(9):5094-5105. doi: 10.1002/ece3.5064. eCollection 2019 May.


Fungal disease and temperature alter skin microbiome structure in an experimental salamander system.

Muletz-Wolz CR, Fleischer RC, Lips KR.

Mol Ecol. 2019 Jun;28(11):2917-2931. doi: 10.1111/mec.15122. Epub 2019 Jun 5.


Population Genomics and Structure of the Critically Endangered Mariana Crow (Corvus kubaryi).

Cortes-Rodriguez N, Campana MG, Berry L, Faegre S, Derrickson SR, Ha RR, Dikow RB, Rutz C, Fleischer RC.

Genes (Basel). 2019 Mar 1;10(3). pii: E187. doi: 10.3390/genes10030187.


Functional variation at an expressed MHC class IIβ locus associates with Ranavirus infection intensity in larval anuran populations.

Savage AE, Muletz-Wolz CR, Campbell Grant EH, Fleischer RC, Mulder KP.

Immunogenetics. 2019 Apr;71(4):335-346. doi: 10.1007/s00251-019-01104-1. Epub 2019 Feb 13.


Parallel evolution of gene classes, but not genes: Evidence from Hawai'ian honeycreeper populations exposed to avian malaria.

Cassin-Sackett L, Callicrate TE, Fleischer RC.

Mol Ecol. 2019 Feb;28(3):568-583. doi: 10.1111/mec.14891. Epub 2018 Nov 22.


Genomic evidence of speciation reversal in ravens.

Kearns AM, Restani M, Szabo I, Schrøder-Nielsen A, Kim JA, Richardson HM, Marzluff JM, Fleischer RC, Johnsen A, Omland KE.

Nat Commun. 2018 Mar 2;9(1):906. doi: 10.1038/s41467-018-03294-w.


Phylogeography and connectivity of molluscan parasites: Perkinsus spp. in Panama and beyond.

Pagenkopp Lohan KM, Hill-Spanik KM, Torchin ME, Fleischer RC, Carnegie RB, Reece KS, Ruiz GM.

Int J Parasitol. 2018 Feb;48(2):135-144. doi: 10.1016/j.ijpara.2017.08.014. Epub 2017 Nov 3.


Insularity effects on the assemblage of the blood parasite community of the birds from the Gulf of Guinea.

Loiseau C, Melo M, Lobato E, Beadell JS, Fleischer RC, Reis S, Doutrelant C, Covas R.

J Biogeogr. 2017 Nov;44(11):2607-2617. doi: 10.1111/jbi.13060. Epub 2017 Jul 11.


Batrachochytrium salamandrivorans not detected in U.S. survey of pet salamanders.

Klocke B, Becker M, Lewis J, Fleischer RC, Muletz-Wolz CR, Rockwood L, Aguirre AA, Gratwicke B.

Sci Rep. 2017 Oct 13;7(1):13132. doi: 10.1038/s41598-017-13500-2.


Interacting effects of wildlife loss and climate on ticks and tick-borne disease.

Titcomb G, Allan BF, Ainsworth T, Henson L, Hedlund T, Pringle RM, Palmer TM, Njoroge L, Campana MG, Fleischer RC, Mantas JN, Young HS.

Proc Biol Sci. 2017 Sep 13;284(1862). pii: 20170475. doi: 10.1098/rspb.2017.0475.


White-Nose Syndrome Fungus in a 1918 Bat Specimen from France.

Campana MG, Kurata NP, Foster JT, Helgen LE, Reeder DM, Fleischer RC, Helgen KM.

Emerg Infect Dis. 2017 Sep;23(9):1611-1612. doi: 10.3201/eid2309.170875.


Effects of host species and environment on the skin microbiome of Plethodontid salamanders.

Muletz Wolz CR, Yarwood SA, Campbell Grant EH, Fleischer RC, Lips KR.

J Anim Ecol. 2018 Mar;87(2):341-353. doi: 10.1111/1365-2656.12726. Epub 2017 Aug 21.


Evolutionary dynamics of an expressed MHC class IIβ locus in the Ranidae (Anura) uncovered by genome walking and high-throughput amplicon sequencing.

Mulder KP, Cortazar-Chinarro M, Harris DJ, Crottini A, Campbell Grant EH, Fleischer RC, Savage AE.

Dev Comp Immunol. 2017 Nov;76:177-188. doi: 10.1016/j.dci.2017.05.022. Epub 2017 Jun 3.


Genetic population structure in an equatorial sparrow: roles for culture and geography.

Danner JE, Fleischer RC, Danner RM, Moore IT.

J Evol Biol. 2017 Jun;30(6):1078-1093. doi: 10.1111/jeb.13065. Epub 2017 Apr 19.


Protistan Biogeography: A Snapshot Across a Major Shipping Corridor Spanning Two Oceans.

Pagenkopp Lohan KM, Fleischer RC, Torchin ME, Ruiz GM.

Protist. 2017 Apr;168(2):183-196. doi: 10.1016/j.protis.2016.12.003. Epub 2017 Jan 6.


Antifungal Bacteria on Woodland Salamander Skin Exhibit High Taxonomic Diversity and Geographic Variability.

Muletz-Wolz CR, DiRenzo GV, Yarwood SA, Campbell Grant EH, Fleischer RC, Lips KR.

Appl Environ Microbiol. 2017 Apr 17;83(9). pii: e00186-17. doi: 10.1128/AEM.00186-17. Print 2017 May 1.


Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus).

Campana MG, Parker LD, Hawkins MT, Young HS, Helgen KM, Szykman Gunther M, Woodroffe R, Maldonado JE, Fleischer RC.

BMC Genomics. 2016 Dec 9;17(1):1013.


A novel MC1R allele for black coat colour reveals the Polynesian ancestry and hybridization patterns of Hawaiian feral pigs.

Linderholm A, Spencer D, Battista V, Frantz L, Barnett R, Fleischer RC, James HF, Duffy D, Sparks JP, Clements DR, Andersson L, Dobney K, Leonard JA, Larson G.

R Soc Open Sci. 2016 Sep 7;3(9):160304. eCollection 2016 Sep.


Reduced immune function predicts disease susceptibility in frogs infected with a deadly fungal pathogen.

Savage AE, Terrell KA, Gratwicke B, Mattheus NM, Augustine L, Fleischer RC.

Conserv Physiol. 2016 Apr 15;4(1):cow011. doi: 10.1093/conphys/cow011. eCollection 2016.


Richness and distribution of tropical oyster parasites in two oceans.

Pagenkopp Lohan KM, Hill-Spanik KM, Torchin ME, Aguirre-Macedo L, Fleischer RC, Ruiz GM.

Parasitology. 2016 Aug;143(9):1119-32. doi: 10.1017/S0031182015001900. Epub 2016 Jun 6.


Simultaneous identification of host, ectoparasite and pathogen DNA via in-solution capture.

Campana MG, Hawkins MT, Henson LH, Stewardson K, Young HS, Card LR, Lock J, Agwanda B, Brinkerhoff J, Gaff HD, Helgen KM, Maldonado JE, McShea WJ, Fleischer RC.

Mol Ecol Resour. 2016 Sep;16(5):1224-39. doi: 10.1111/1755-0998.12524. Epub 2016 Apr 4.


Hidden in plain sight: Cryptic and endemic malaria parasites in North American white-tailed deer (Odocoileus virginianus).

Martinsen ES, McInerney N, Brightman H, Ferebee K, Walsh T, McShea WJ, Forrester TD, Ware L, Joyner PH, Perkins SL, Latch EK, Yabsley MJ, Schall JJ, Fleischer RC.

Sci Adv. 2016 Feb 5;2(2):e1501486. doi: 10.1126/sciadv.1501486. eCollection 2016 Feb.


Identification and characterization of microsatellite loci in two socially complex old world tropical babblers (Family Timaliidae).

Kaiser SA, Danner JE, Bergner L, Fleischer RC.

BMC Res Notes. 2015 Nov 24;8:707. doi: 10.1186/s13104-015-1684-9.


Experimental resource pulses influence social-network dynamics and the potential for information flow in tool-using crows.

St Clair JJH, Burns ZT, Bettaney EM, Morrissey MB, Otis B, Ryder TB, Fleischer RC, James R, Rutz C.

Nat Commun. 2015 Nov 3;6:7197. doi: 10.1038/ncomms8197.


Amplicon-Based Pyrosequencing Reveals High Diversity of Protistan Parasites in Ships' Ballast Water: Implications for Biogeography and Infectious Diseases.

Pagenkopp Lohan KM, Fleischer RC, Carney KJ, Holzer KK, Ruiz GM.

Microb Ecol. 2016 Apr;71(3):530-42. doi: 10.1007/s00248-015-0684-6. Epub 2015 Oct 17.


Phylogeography of the Golden Jackal (Canis aureus) in India.

Yumnam B, Negi T, Maldonado JE, Fleischer RC, Jhala YV.

PLoS One. 2015 Sep 28;10(9):e0138497. doi: 10.1371/journal.pone.0138497. eCollection 2015.


Conservation archaeogenomics: ancient DNA and biodiversity in the Anthropocene.

Hofman CA, Rick TC, Fleischer RC, Maldonado JE.

Trends Ecol Evol. 2015 Sep;30(9):540-9. doi: 10.1016/j.tree.2015.06.008. Epub 2015 Jul 11. Review.


Mitochondrial genomes suggest rapid evolution of dwarf California Channel Islands foxes (Urocyon littoralis).

Hofman CA, Rick TC, Hawkins MT, Funk WC, Ralls K, Boser CL, Collins PW, Coonan T, King JL, Morrison SA, Newsome SD, Sillett TS, Fleischer RC, Maldonado JE.

PLoS One. 2015 Feb 25;10(2):e0118240. doi: 10.1371/journal.pone.0118240. eCollection 2015.


Drivers of Intensity and Prevalence of Flea Parasitism on Small Mammals in East African Savanna Ecosystems.

Young HS, Dirzo R, McCauley DJ, Agwanda B, Cattaneo L, Dittmar K, Eckerlin RP, Fleischer RC, Helgen LE, Hintz A, Montinieri J, Zhao S, Helgen KM.

J Parasitol. 2015 Jun;101(3):327-35. doi: 10.1645/14-684.1. Epub 2015 Jan 29.


Genomic resources for the endangered Hawaiian honeycreepers.

Callicrate T, Dikow R, Thomas JW, Mullikin JC, Jarvis ED, Fleischer RC; NISC Comparative Sequencing Program.

BMC Genomics. 2014 Dec 12;15:1098. doi: 10.1186/1471-2164-15-1098.


Distinct and extinct: genetic differentiation of the Hawaiian eagle.

Hailer F, James HF, Olson SL, Fleischer RC.

Mol Phylogenet Evol. 2015 Feb;83:40-3. doi: 10.1016/j.ympev.2014.11.005. Epub 2014 Nov 15.


Prioritizing tiger conservation through landscape genetics and habitat linkages.

Yumnam B, Jhala YV, Qureshi Q, Maldonado JE, Gopal R, Saini S, Srinivas Y, Fleischer RC.

PLoS One. 2014 Nov 13;9(11):e111207. doi: 10.1371/journal.pone.0111207. eCollection 2014.


Elephant endotheliotropic herpesviruses EEHV1A, EEHV1B, and EEHV2 from cases of hemorrhagic disease are highly diverged from other mammalian herpesviruses and may form a new subfamily.

Richman LK, Zong JC, Latimer EM, Lock J, Fleischer RC, Heaggans SY, Hayward GS.

J Virol. 2014 Dec;88(23):13523-46. doi: 10.1128/JVI.01673-14. Epub 2014 Sep 17.


Unexpected rarity of the pathogen Batrachochytrium dendrobatidis in Appalachian Plethodon Salamanders: 1957-2011.

Muletz C, Caruso NM, Fleischer RC, McDiarmid RW, Lips KR.

PLoS One. 2014 Aug 1;9(8):e103728. doi: 10.1371/journal.pone.0103728. eCollection 2014.


Conservation and divergence in the frog immunome: pyrosequencing and de novo assembly of immune tissue transcriptomes.

Savage AE, Kiemnec-Tyburczy KM, Ellison AR, Fleischer RC, Zamudio KR.

Gene. 2014 Jun 1;542(2):98-108. doi: 10.1016/j.gene.2014.03.051. Epub 2014 Mar 27.


Using genetic profiles of African forest elephants to infer population structure, movements, and habitat use in a conservation and development landscape in Gabon.

Eggert LS, Buij R, Lee ME, Campbell P, Dallmeier F, Fleischer RC, Alonso A, Maldonado JE.

Conserv Biol. 2014 Feb;28(1):107-18. doi: 10.1111/cobi.12161. Epub 2013 Nov 1.


Cryptic population structuring and the role of the Isthmus of Tehuantepec as a gene flow barrier in the critically endangered Central American River Turtle.

González-Porter GP, Maldonado JE, Flores-Villela O, Vogt RC, Janke A, Fleischer RC, Hailer F.

PLoS One. 2013 Sep 25;8(9):e71668. doi: 10.1371/journal.pone.0071668. eCollection 2013.


Conservation outside protected areas and the effect of human-dominated landscapes on stress hormones in Savannah elephants.

Ahlering MA, Maldonado JE, Eggert LS, Fleischer RC, Western D, Brown JL.

Conserv Biol. 2013 Jun;27(3):569-75. doi: 10.1111/cobi.12061.


Millennial-scale isotope records from a wide-ranging predator show evidence of recent human impact to oceanic food webs.

Wiley AE, Ostrom PH, Welch AJ, Fleischer RC, Gandhi H, Southon JR, Stafford TW Jr, Penniman JF, Hu D, Duvall FP, James HF.

Proc Natl Acad Sci U S A. 2013 May 28;110(22):8972-7. doi: 10.1073/pnas.1300213110. Epub 2013 May 13.


Mitochondrial phylogenomics of modern and ancient equids.

Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SC, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC, Cooper A, Shapiro B, Orlando L.

PLoS One. 2013;8(2):e55950. doi: 10.1371/journal.pone.0055950. Epub 2013 Feb 20.


Hepatozoon parasites (Apicomplexa: Adeleorina) in bats.

Pinto CM, Helgen KM, Fleischer RC, Perkins SL.

J Parasitol. 2013 Aug;99(4):722-4. doi: 10.1645/12-18.1. Epub 2012 Dec 15.


Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo).

Aslam ML, Bastiaansen JW, Elferink MG, Megens HJ, Crooijmans RP, Blomberg le A, Fleischer RC, Van Tassell CP, Sonstegard TS, Schroeder SG, Groenen MA, Long JA.

BMC Genomics. 2012 Aug 14;13:391. doi: 10.1186/1471-2164-13-391.


Ancient DNA reveals genetic stability despite demographic decline: 3,000 years of population history in the endemic Hawaiian petrel.

Welch AJ, Wiley AE, James HF, Ostrom PH, Stafford TW Jr, Fleischer RC.

Mol Biol Evol. 2012 Dec;29(12):3729-40. doi: 10.1093/molbev/mss185. Epub 2012 Jul 25.


The ecological-evolutionary interplay: density-dependent sexual selection in a migratory songbird.

Ryder TB, Fleischer RC, Shriver WG, Marra PP.

Ecol Evol. 2012 May;2(5):976-87. doi: 10.1002/ece3.254.


Temporal patterns of genetic diversity in Kirtland's warblers (Dendroica kirtlandii), the rarest songbird in North America.

Wilson AS, Marra PP, Fleischer RC.

BMC Ecol. 2012 Jun 22;12:8. doi: 10.1186/1472-6785-12-8.


Multiple independent origins of mitochondrial control region duplications in the order Psittaciformes.

Schirtzinger EE, Tavares ES, Gonzales LA, Eberhard JR, Miyaki CY, Sanchez JJ, Hernandez A, Müeller H, Graves GR, Fleischer RC, Wright TF.

Mol Phylogenet Evol. 2012 Aug;64(2):342-56. doi: 10.1016/j.ympev.2012.04.009. Epub 2012 Apr 20.


Population divergence and gene flow in an endangered and highly mobile seabird.

Welch AJ, Fleischer RC, James HF, Wiley AE, Ostrom PH, Adams J, Duvall F, Holmes N, Hu D, Penniman J, Swindle KA.

Heredity (Edinb). 2012 Jul;109(1):19-28. doi: 10.1038/hdy.2012.7. Epub 2012 Mar 21.

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