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Items: 10

1.

Best practices for benchmarking germline small-variant calls in human genomes.

Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA, Tezak Z, Lababidi S, Truty R, Asimenos G, Funke B, Fleharty M, Chapman BA, Salit M, Zook JM; Global Alliance for Genomics and Health Benchmarking Team.

Nat Biotechnol. 2019 Mar 11. doi: 10.1038/s41587-019-0054-x. [Epub ahead of print]

PMID:
30858580
2.

A synthetic-diploid benchmark for accurate variant-calling evaluation.

Li H, Bloom JM, Farjoun Y, Fleharty M, Gauthier L, Neale B, MacArthur D.

Nat Methods. 2018 Aug;15(8):595-597. doi: 10.1038/s41592-018-0054-7. Epub 2018 Jul 16.

3.

Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms.

Costello M, Fleharty M, Abreu J, Farjoun Y, Ferriera S, Holmes L, Granger B, Green L, Howd T, Mason T, Vicente G, Dasilva M, Brodeur W, DeSmet T, Dodge S, Lennon NJ, Gabriel S.

BMC Genomics. 2018 May 8;19(1):332. doi: 10.1186/s12864-018-4703-0.

4.

Corrigendum: Landscape of X chromosome inactivation across human tissues.

Tukiainen T, Villani AC, Yen A, Rivas MA, Marshall JL, Satija R, Aguirre M, Gauthier L, Fleharty M, Kirby A, Cummings BB, Castel SE, Karczewski KJ, Aguet F, Byrnes A, Consortium G, Lappalainen T, Regev A, Ardlie KG, Hacohen N, MacArthur DG.

Nature. 2018 Mar 7;555(7695):274. doi: 10.1038/nature25993.

PMID:
29517003
5.

Landscape of X chromosome inactivation across human tissues.

Tukiainen T, Villani AC, Yen A, Rivas MA, Marshall JL, Satija R, Aguirre M, Gauthier L, Fleharty M, Kirby A, Cummings BB, Castel SE, Karczewski KJ, Aguet F, Byrnes A; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group; Statistical Methods groups—Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site—NDRI; Biospecimen Collection Source Site—RPCI; Biospecimen Core Resource—VARI; Brain Bank Repository—University of Miami Brain Endowment Bank; Leidos Biomedical—Project Management; ELSI Study; Genome Browser Data Integration &Visualization—EBI; Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz, Lappalainen T, Regev A, Ardlie KG, Hacohen N, MacArthur DG.

Nature. 2017 Oct 11;550(7675):244-248. doi: 10.1038/nature24265. Erratum in: Nature. 2018 Mar 7;555(7695):274.

6.

Solvent Role in the Formation of Electric Double Layers with Surface Charge Regulation: A Bystander or a Key Participant?

Fleharty ME, van Swol F, Petsev DN.

Phys Rev Lett. 2016 Jan 29;116(4):048301. doi: 10.1103/PhysRevLett.116.048301. Epub 2016 Jan 26.

PMID:
26871358
7.

Charge regulation at semiconductor-electrolyte interfaces.

Fleharty ME, van Swol F, Petsev DN.

J Colloid Interface Sci. 2015 Jul 1;449:409-15. doi: 10.1016/j.jcis.2014.12.058. Epub 2014 Dec 29.

PMID:
25595623
8.

Manipulating semiconductor colloidal stability through doping.

Fleharty ME, van Swol F, Petsev DN.

Phys Rev Lett. 2014 Oct 10;113(15):158302. Epub 2014 Oct 7.

PMID:
25375747
9.

The effect of surface charge regulation on conductivity in fluidic nanochannels.

Fleharty ME, van Swol F, Petsev DN.

J Colloid Interface Sci. 2014 Feb 15;416:105-11. doi: 10.1016/j.jcis.2013.10.051. Epub 2013 Nov 9.

PMID:
24370409
10.

Expressed sequences from conidial, mycelial, and sexual stages of Neurospora crassa.

Nelson MA, Kang S, Braun EL, Crawford ME, Dolan PL, Leonard PM, Mitchell J, Armijo AM, Bean L, Blueyes E, Cushing T, Errett A, Fleharty M, Gorman M, Judson K, Miller R, Ortega J, Pavlova I, Perea J, Todisco S, Trujillo R, Valentine J, Wells A, Werner-Washburne M, Natvig DO, et al.

Fungal Genet Biol. 1997 Jun;21(3):348-63.

PMID:
9290248

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