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Items: 35

1.

Ancient genomes document multiple waves of migration in Southeast Asian prehistory.

Lipson M, Cheronet O, Mallick S, Rohland N, Oxenham M, Pietrusewsky M, Pryce TO, Willis A, Matsumura H, Buckley H, Domett K, Nguyen GH, Trinh HH, Kyaw AA, Win TT, Pradier B, Broomandkhoshbacht N, Candilio F, Changmai P, Fernandes D, Ferry M, Gamarra B, Harney E, Kampuansai J, Kutanan W, Michel M, Novak M, Oppenheimer J, Sirak K, Stewardson K, Zhang Z, Flegontov P, Pinhasi R, Reich D.

Science. 2018 Jul 6;361(6397):92-95. doi: 10.1126/science.aat3188. Epub 2018 May 17.

PMID:
29773666
2.

Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase.

Záhonová K, Petrželková R, Valach M, Yazaki E, Tikhonenkov DV, Butenko A, Janouškovec J, Hrdá Š, Klimeš V, Burger G, Inagaki Y, Keeling PJ, Hampl V, Flegontov P, Yurchenko V, Eliáš M.

Sci Rep. 2018 Mar 27;8(1):5239. doi: 10.1038/s41598-018-23575-0.

3.

Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand.

Kutanan W, Kampuansai J, Changmai P, Flegontov P, Schröder R, Macholdt E, Hübner A, Kangwanpong D, Stoneking M.

Sci Rep. 2018 Jan 24;8(1):1536. doi: 10.1038/s41598-018-20020-0.

4.

Neobodonids are dominant kinetoplastids in the global ocean.

Flegontova O, Flegontov P, Malviya S, Poulain J, de Vargas C, Bowler C, Lukeš J, Horák A.

Environ Microbiol. 2018 Feb;20(2):878-889. doi: 10.1111/1462-2920.14034.

PMID:
29266706
5.

Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Gerasimov ES, Gasparyan AA, Kaurov I, Tichý B, Logacheva MD, Kolesnikov AA, Lukeš J, Yurchenko V, Zimmer SL, Flegontov P.

Nucleic Acids Res. 2018 Jan 25;46(2):765-781. doi: 10.1093/nar/gkx1202.

6.

Archaeogenomic analysis of the first steps of Neolithization in Anatolia and the Aegean.

Kılınç GM, Koptekin D, Atakuman Ç, Sümer AP, Dönertaş HM, Yaka R, Bilgin CC, Büyükkarakaya AM, Baird D, Altınışık E, Flegontov P, Götherström A, Togan İ, Somel M.

Proc Biol Sci. 2017 Nov 29;284(1867). pii: 20172064. doi: 10.1098/rspb.2017.2064.

7.

Extensive flagellar remodeling during the complex life cycle of Paratrypanosoma, an early-branching trypanosomatid.

Skalický T, Dobáková E, Wheeler RJ, Tesařová M, Flegontov P, Jirsová D, Votýpka J, Yurchenko V, Ayala FJ, Lukeš J.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11757-11762. doi: 10.1073/pnas.1712311114. Epub 2017 Oct 16.

8.

Genome of Ca. Pandoraea novymonadis, an Endosymbiotic Bacterium of the Trypanosomatid Novymonas esmeraldas.

Kostygov AY, Butenko A, Nenarokova A, Tashyreva D, Flegontov P, Lukeš J, Yurchenko V.

Front Microbiol. 2017 Oct 4;8:1940. doi: 10.3389/fmicb.2017.01940. eCollection 2017.

9.

Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis.

Tanifuji G, Cenci U, Moog D, Dean S, Nakayama T, David V, Fiala I, Curtis BA, Sibbald SJ, Onodera NT, Colp M, Flegontov P, Johnson-MacKinnon J, McPhee M, Inagaki Y, Hashimoto T, Kelly S, Gull K, Lukeš J, Archibald JM.

Sci Rep. 2017 Sep 15;7(1):11688. doi: 10.1038/s41598-017-11866-x.

10.

Dispersals of the Siberian Y-chromosome haplogroup Q in Eurasia.

Huang YZ, Pamjav H, Flegontov P, Stenzl V, Wen SQ, Tong XZ, Wang CC, Wang LX, Wei LH, Gao JY, Jin L, Li H.

Mol Genet Genomics. 2018 Feb;293(1):107-117. doi: 10.1007/s00438-017-1363-8. Epub 2017 Sep 7.

11.

Molecular mechanisms of thermal resistance of the insect trypanosomatid Crithidia thermophila.

Ishemgulova A, Butenko A, Kortišová L, Boucinha C, Grybchuk-Ieremenko A, Morelli KA, Tesařová M, Kraeva N, Grybchuk D, Pánek T, Flegontov P, Lukeš J, Votýpka J, Pavan MG, Opperdoes FR, Spodareva V, d'Avila-Levy CM, Kostygov AY, Yurchenko V.

PLoS One. 2017 Mar 22;12(3):e0174165. doi: 10.1371/journal.pone.0174165. eCollection 2017.

12.

Extreme Diversity of Diplonemid Eukaryotes in the Ocean.

Flegontova O, Flegontov P, Malviya S, Audic S, Wincker P, de Vargas C, Bowler C, Lukeš J, Horák A.

Curr Biol. 2016 Nov 21;26(22):3060-3065. doi: 10.1016/j.cub.2016.09.031.

13.

Toward high-resolution population genomics using archaeological samples.

Morozova I, Flegontov P, Mikheyev AS, Bruskin S, Asgharian H, Ponomarenko P, Klyuchnikov V, ArunKumar G, Prokhortchouk E, Gankin Y, Rogaev E, Nikolsky Y, Baranova A, Elhaik E, Tatarinova TV.

DNA Res. 2016 Aug;23(4):295-310. doi: 10.1093/dnares/dsw029. Epub 2016 Jul 19. Review.

14.

Pitfalls of the Geographic Population Structure (GPS) Approach Applied to Human Genetic History: A Case Study of Ashkenazi Jews.

Flegontov P, Kassian A, Thomas MG, Fedchenko V, Changmai P, Starostin G.

Genome Biol Evol. 2016 Aug 16;8(7):2259-65. doi: 10.1093/gbe/evw162. Review. Erratum in: Genome Biol Evol. 2017 Feb 1;9(2):372.

15.

Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.

Flegontov P, Butenko A, Firsov S, Kraeva N, Eliáš M, Field MC, Filatov D, Flegontova O, Gerasimov ES, Hlaváčová J, Ishemgulova A, Jackson AP, Kelly S, Kostygov AY, Logacheva MD, Maslov DA, Opperdoes FR, O'Reilly A, Sádlová J, Ševčíková T, Venkatesh D, Vlček Č, Volf P, Votýpka J, Záhonová K, Yurchenko V, Lukeš J.

Sci Rep. 2016 Mar 29;6:23704. doi: 10.1038/srep23704.

16.

Comparative Metabolism of Free-living Bodo saltans and Parasitic Trypanosomatids.

Opperdoes FR, Butenko A, Flegontov P, Yurchenko V, Lukeš J.

J Eukaryot Microbiol. 2016 Sep;63(5):657-78. doi: 10.1111/jeu.12315. Epub 2016 Apr 20. Review.

PMID:
27009761
17.

Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.

Flegontov P, Changmai P, Zidkova A, Logacheva MD, Altınışık NE, Flegontova O, Gelfand MS, Gerasimov ES, Khrameeva EE, Konovalova OP, Neretina T, Nikolsky YV, Starostin G, Stepanova VV, Travinsky IV, Tříska M, Tříska P, Tatarinova TV.

Sci Rep. 2016 Feb 11;6:20768. doi: 10.1038/srep20768.

18.

Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid.

David V, Flegontov P, Gerasimov E, Tanifuji G, Hashimi H, Logacheva MD, Maruyama S, Onodera NT, Gray MW, Archibald JM, Lukeš J.

MBio. 2015 Dec 1;6(6):e01498-15. doi: 10.1128/mBio.01498-15.

19.

Unexpectedly Streamlined Mitochondrial Genome of the Euglenozoan Euglena gracilis.

Dobáková E, Flegontov P, Skalický T, Lukeš J.

Genome Biol Evol. 2015 Nov 20;7(12):3358-67. doi: 10.1093/gbe/evv229.

20.

Leptomonas seymouri: Adaptations to the Dixenous Life Cycle Analyzed by Genome Sequencing, Transcriptome Profiling and Co-infection with Leishmania donovani.

Kraeva N, Butenko A, Hlaváčová J, Kostygov A, Myškova J, Grybchuk D, Leštinová T, Votýpka J, Volf P, Opperdoes F, Flegontov P, Lukeš J, Yurchenko V.

PLoS Pathog. 2015 Aug 28;11(8):e1005127. doi: 10.1371/journal.ppat.1005127. eCollection 2015 Aug.

21.

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.

Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, Gornik SG, Hajdušková E, Horák A, Janouškovec J, Katris NJ, Mast FD, Miranda-Saavedra D, Mourier T, Naeem R, Nair M, Panigrahi AK, Rawlings ND, Padron-Regalado E, Ramaprasad A, Samad N, Tomčala A, Wilkes J, Neafsey DE, Doerig C, Bowler C, Keeling PJ, Roos DS, Dacks JB, Templeton TJ, Waller RF, Lukeš J, Oborník M, Pain A.

Elife. 2015 Jul 15;4:e06974. doi: 10.7554/eLife.06974.

22.

Differential Evolution approach to detect recent admixture.

Kozlov K, Chebotarev D, Hassan M, Triska M, Triska P, Flegontov P, Tatarinova TV.

BMC Genomics. 2015;16 Suppl 8:S9. doi: 10.1186/1471-2164-16-S8-S9. Epub 2015 Jun 18.

23.

Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites.

Flegontov P, Michálek J, Janouškovec J, Lai DH, Jirků M, Hajdušková E, Tomčala A, Otto TD, Keeling PJ, Pain A, Oborník M, Lukeš J.

Mol Biol Evol. 2015 May;32(5):1115-31. doi: 10.1093/molbev/msv021. Epub 2015 Feb 6.

PMID:
25660376
24.

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants.

Porcel BM, Denoeud F, Opperdoes F, Noel B, Madoui MA, Hammarton TC, Field MC, Da Silva C, Couloux A, Poulain J, Katinka M, Jabbari K, Aury JM, Campbell DA, Cintron R, Dickens NJ, Docampo R, Sturm NR, Koumandou VL, Fabre S, Flegontov P, Lukeš J, Michaeli S, Mottram JC, Szöőr B, Zilberstein D, Bringaud F, Wincker P, Dollet M.

PLoS Genet. 2014 Feb 6;10(2):e1004007. doi: 10.1371/journal.pgen.1004007. eCollection 2014 Feb.

25.

Paratrypanosoma is a novel early-branching trypanosomatid.

Flegontov P, Votýpka J, Skalický T, Logacheva MD, Penin AA, Tanifuji G, Onodera NT, Kondrashov AS, Volf P, Archibald JM, Lukeš J.

Curr Biol. 2013 Sep 23;23(18):1787-93. doi: 10.1016/j.cub.2013.07.045. Epub 2013 Sep 5.

26.

Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia.

Janouskovec J, Sobotka R, Lai DH, Flegontov P, Koník P, Komenda J, Ali S, Prásil O, Pain A, Oborník M, Lukes J, Keeling PJ.

Mol Biol Evol. 2013 Nov;30(11):2447-62. doi: 10.1093/molbev/mst144. Epub 2013 Aug 22.

PMID:
23974208
27.

Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin.

Burki F, Flegontov P, Oborník M, Cihlár J, Pain A, Lukes J, Keeling PJ.

Genome Biol Evol. 2012;4(6):626-35. doi: 10.1093/gbe/evs049. Epub 2012 May 16.

28.

Lack of evidence for integration of Trypanosoma cruzi minicircle DNA in South American human genomes.

Flegontova O, Lukeš J, Flegontov P.

Int J Parasitol. 2012 May 1;42(5):437-41. doi: 10.1016/j.ijpara.2012.04.001. Epub 2012 Apr 24.

PMID:
22549024
29.

Aerobic kinetoplastid flagellate Phytomonas does not require heme for viability.

Kořený L, Sobotka R, Kovářová J, Gnipová A, Flegontov P, Horváth A, Oborník M, Ayala FJ, Lukeš J.

Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3808-13. doi: 10.1073/pnas.1201089109. Epub 2012 Feb 21.

30.

[The epidemiological features of visceral leishmaniasis, revealed on examination of children by polymerase chain reaction, in the Papsky District, Namangan Region, Uzbekistan].

Zhirenkina EN, Ponirovskiĭ EN, Strelkova MV, Morozov EN, Flegontov PN, Kolesnikov AA, Ponomareva VI, Nasyrova RM, Kovalenko DA, Fatullaeva AA, Razakov ShA, Shnur L, Banet G, Varburg A, Shonian G.

Med Parazitol (Mosk). 2011 Jul-Sep;(3):37-41. Russian.

PMID:
21936088
31.

Gene fragmentation: a key to mitochondrial genome evolution in Euglenozoa?

Flegontov P, Gray MW, Burger G, Lukeš J.

Curr Genet. 2011 Aug;57(4):225-32. doi: 10.1007/s00294-011-0340-8. Epub 2011 May 5. Review.

PMID:
21544620
32.

Selective amplification of maxicircle classes during the life cycle of Leishmania major.

Flegontov PN, Zhirenkina EN, Gerasimov ES, Ponirovsky EN, Strelkova MV, Kolesnikov AA.

Mol Biochem Parasitol. 2009 Jun;165(2):142-52. doi: 10.1016/j.molbiopara.2009.01.014. Epub 2009 Feb 6.

PMID:
19428661
33.

Radically different maxicircle classes within the same kinetoplast: an artefact or a novel feature of the kinetoplast genome?

Flegontov PN, Kolesnikov AA.

Kinetoplastid Biol Dis. 2006 Sep 18;5:5. doi: 10.1186/1475-9292-5-5.

34.

Conserved repeats in the kinetoplast maxicircle divergent region of Leishmania sp. and Leptomonas seymouri.

Flegontov PN, Guo Q, Ren L, Strelkova MV, Kolesnikov AA.

Mol Genet Genomics. 2006 Oct;276(4):322-33. Epub 2006 Aug 15.

PMID:
16909285
35.

The Leishmania major maxicircle divergent region is variable in different isolates and cell types.

Flegontov PN, Strelkova MV, Kolesnikov AA.

Mol Biochem Parasitol. 2006 Apr;146(2):173-9. Epub 2006 Jan 6.

PMID:
16442169

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