Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 80

1.

Optimizing the procedure of grain nutrient predictions in barley via hyperspectral imaging.

Wiegmann M, Backhaus A, Seiffert U, Thomas WTB, Flavell AJ, Pillen K, Maurer A.

PLoS One. 2019 Nov 7;14(11):e0224491. doi: 10.1371/journal.pone.0224491. eCollection 2019.

2.

"Wild barley serves as a source for biofortification of barley grains".

Wiegmann M, Thomas WTB, Bull HJ, Flavell AJ, Zeyner A, Peiter E, Pillen K, Maurer A.

Plant Sci. 2019 Jun;283:83-94. doi: 10.1016/j.plantsci.2018.12.030. Epub 2019 Feb 26.

3.

Barley yield formation under abiotic stress depends on the interplay between flowering time genes and environmental cues.

Wiegmann M, Maurer A, Pham A, March TJ, Al-Abdallat A, Thomas WTB, Bull HJ, Shahid M, Eglinton J, Baum M, Flavell AJ, Tester M, Pillen K.

Sci Rep. 2019 Apr 25;9(1):6397. doi: 10.1038/s41598-019-42673-1.

4.

Genome-wide association of yield traits in a nested association mapping population of barley reveals new gene diversity for future breeding.

Sharma R, Draicchio F, Bull H, Herzig P, Maurer A, Pillen K, Thomas WTB, Flavell AJ.

J Exp Bot. 2018 Jul 18;69(16):3811-3822. doi: 10.1093/jxb/ery178.

5.

Genome-Wide Association Analysis of Grain Yield-Associated Traits in a Pan-European Barley Cultivar Collection.

Xu X, Sharma R, Tondelli A, Russell J, Comadran J, Schnaithmann F, Pillen K, Kilian B, Cattivelli L, Thomas WTB, Flavell AJ.

Plant Genome. 2018 Mar;11(1). doi: 10.3835/plantgenome2017.08.0073.

6.

Contrasting genetic regulation of plant development in wild barley grown in two European environments revealed by nested association mapping.

Herzig P, Maurer A, Draba V, Sharma R, Draicchio F, Bull H, Milne L, Thomas WTB, Flavell AJ, Pillen K.

J Exp Bot. 2018 Mar 24;69(7):1517-1531. doi: 10.1093/jxb/ery002.

7.

Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility.

Bull H, Casao MC, Zwirek M, Flavell AJ, Thomas WTB, Guo W, Zhang R, Rapazote-Flores P, Kyriakidis S, Russell J, Druka A, McKim SM, Waugh R.

Nat Commun. 2017 Oct 16;8(1):936. doi: 10.1038/s41467-017-00940-7.

8.

An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.

Ribeiro A, Golicz A, Hackett CA, Milne I, Stephen G, Marshall D, Flavell AJ, Bayer M.

BMC Bioinformatics. 2015 Nov 11;16:382. doi: 10.1186/s12859-015-0801-z.

9.

Chromatin state analysis of the barley epigenome reveals a higher-order structure defined by H3K27me1 and H3K27me3 abundance.

Baker K, Dhillon T, Colas I, Cook N, Milne I, Milne L, Bayer M, Flavell AJ.

Plant J. 2015 Oct;84(1):111-24. doi: 10.1111/tpj.12963. Epub 2015 Sep 9.

10.

The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression.

Baker K, Bayer M, Cook N, Dreißig S, Dhillon T, Russell J, Hedley PE, Morris J, Ramsay L, Colas I, Waugh R, Steffenson B, Milne I, Stephen G, Marshall D, Flavell AJ.

Plant J. 2014 Sep;79(6):981-92. doi: 10.1111/tpj.12600. Epub 2014 Aug 5.

11.

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.

Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N.

Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24.

12.

Genetic diversity in European Pisum germplasm collections.

Jing R, Ambrose MA, Knox MR, Smykal P, Hybl M, Ramos Á, Caminero C, Burstin J, Duc G, van Soest LJ, Święcicki WK, Pereira MG, Vishnyakova M, Davenport GF, Flavell AJ, Ellis TH.

Theor Appl Genet. 2012 Jul;125(2):367-80. doi: 10.1007/s00122-012-1839-1. Epub 2012 Apr 1.

13.

The application of LTR retrotransposons as molecular markers in plants.

Schulman AH, Flavell AJ, Paux E, Ellis TH.

Methods Mol Biol. 2012;859:115-53. doi: 10.1007/978-1-61779-603-6_7.

PMID:
22367869
14.

Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development.

Hooftman DA, Flavell AJ, Jansen H, den Nijs HC, Syed NH, Sørensen AP, Orozco-Ter Wengel P, van de Wiel CC.

Evol Appl. 2011 Sep;4(5):648-59. doi: 10.1111/j.1752-4571.2011.00188.x. Epub 2011 Apr 27.

15.

Analysis of >1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes.

Russell J, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R.

New Phytol. 2011 Jul;191(2):564-78. doi: 10.1111/j.1469-8137.2011.03704.x. Epub 2011 Mar 28.

16.

Flapjack--graphical genotype visualization.

Milne I, Shaw P, Stephen G, Bayer M, Cardle L, Thomas WT, Flavell AJ, Marshall D.

Bioinformatics. 2010 Dec 15;26(24):3133-4. doi: 10.1093/bioinformatics/btq580. Epub 2010 Oct 18.

17.

Analysis of plant diversity with retrotransposon-based molecular markers.

Kalendar R, Flavell AJ, Ellis TH, Sjakste T, Moisy C, Schulman AH.

Heredity (Edinb). 2011 Apr;106(4):520-30. doi: 10.1038/hdy.2010.93. Epub 2010 Aug 4. Review.

18.

Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data.

Moragues M, Comadran J, Waugh R, Milne I, Flavell AJ, Russell JR.

Theor Appl Genet. 2010 May;120(8):1525-34. doi: 10.1007/s00122-010-1273-1. Epub 2010 Feb 16.

PMID:
20157694
19.

The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis.

Jing R, Vershinin A, Grzebyta J, Shaw P, Smýkal P, Marshall D, Ambrose MJ, Ellis TH, Flavell AJ.

BMC Evol Biol. 2010 Feb 15;10:44. doi: 10.1186/1471-2148-10-44.

20.

Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome.

Lyons M, Cardle L, Rostoks N, Waugh R, Flavell AJ.

Mol Genet Genomics. 2008 Oct;280(4):275-85. doi: 10.1007/s00438-008-0363-0. Epub 2008 Jul 9.

PMID:
18612649
21.

Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis.

Smýkal P, Hýbl M, Corander J, Jarkovský J, Flavell AJ, Griga M.

Theor Appl Genet. 2008 Aug;117(3):413-24. doi: 10.1007/s00122-008-0785-4. Epub 2008 May 27.

PMID:
18504543
22.

Gene-based sequence diversity analysis of field pea (Pisum).

Jing R, Johnson R, Seres A, Kiss G, Ambrose MJ, Knox MR, Ellis TH, Flavell AJ.

Genetics. 2007 Dec;177(4):2263-75.

23.

Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers.

Sanz AM, Gonzalez SG, Syed NH, Suso MJ, Saldaña CC, Flavell AJ.

Mol Genet Genomics. 2007 Oct;278(4):433-41. Epub 2007 Jun 19.

PMID:
17576596
24.
25.
26.

A hAT superfamily transposase recruited by the cereal grass genome.

Muehlbauer GJ, Bhau BS, Syed NH, Heinen S, Cho S, Marshall D, Pateyron S, Buisine N, Chalhoub B, Flavell AJ.

Mol Genet Genomics. 2006 Jun;275(6):553-63. Epub 2006 Feb 9.

PMID:
16468023
27.

A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers.

Syed NH, Sørensen AP, Antonise R, van de Wiel C, van der Linden CG, van 't Westende W, Hooftman DA, den Nijs HC, Flavell AJ.

Theor Appl Genet. 2006 Feb;112(3):517-27. Epub 2005 Dec 10.

PMID:
16341837
28.

GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections.

Lee JM, Davenport GF, Marshall D, Ellis TH, Ambrose MJ, Dicks J, van Hintum TJ, Flavell AJ.

Plant Physiol. 2005 Oct;139(2):619-31.

29.

Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in pisum species.

Jing R, Knox MR, Lee JM, Vershinin AV, Ambrose M, Ellis TH, Flavell AJ.

Genetics. 2005 Oct;171(2):741-52. Epub 2005 Aug 5.

30.

Retrotransposon populations of Vicia species with varying genome size.

Hill P, Burford D, Martin DM, Flavell AJ.

Mol Genet Genomics. 2005 Jun;273(5):371-81. Epub 2005 May 13.

PMID:
15891910
31.

Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.).

Syed NH, Sureshsundar S, Wilkinson MJ, Bhau BS, Cavalcanti JJ, Flavell AJ.

Theor Appl Genet. 2005 May;110(7):1195-202. Epub 2005 Mar 11.

PMID:
15761718
32.

The application of LTR retrotransposons as molecular markers in plants.

Schulman AH, Flavell AJ, Ellis TH.

Methods Mol Biol. 2004;260:145-73.

PMID:
15020808
33.

Retrotransposon-based molecular markers for linkage and genetic diversity analysis in wheat.

Queen RA, Gribbon BM, James C, Jack P, Flavell AJ.

Mol Genet Genomics. 2004 Feb;271(1):91-7. Epub 2003 Dec 2.

PMID:
14652738
34.

A microarray-based high throughput molecular marker genotyping method: the tagged microarray marker (TAM) approach.

Flavell AJ, Bolshakov VN, Booth A, Jing R, Russell J, Ellis TH, Isaac P.

Nucleic Acids Res. 2003 Oct 1;31(19):e115.

35.

Visual representation of database search results: the RHIMS Plot.

Martin DM, Hill P, Barton GJ, Flavell AJ.

Bioinformatics. 2003 May 22;19(8):1037-8.

PMID:
12761069
36.

The evolution of Ty1-copia group retrotransposons in gymnosperms.

Stuart-Rogers C, Flavell AJ.

Mol Biol Evol. 2001 Feb;18(2):155-63.

PMID:
11158374
37.

Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum.

Pearce SR, Knox M, Ellis TH, Flavell AJ, Kumar A.

Mol Gen Genet. 2000 Jul;263(6):898-907.

PMID:
10954074
38.

Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies.

Pearce SR, Stuart-Rogers C, Knox MR, Kumar A, Ellis TH, Flavell AJ.

Plant J. 1999 Sep;19(6):711-7.

39.

Long terminal repeat retrotransposons jump between species.

Flavell AJ.

Proc Natl Acad Sci U S A. 1999 Oct 26;96(22):12211-2. No abstract available.

40.

Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes.

Gribbon BM, Pearce SR, Kalendar R, Schulman AH, Paulin L, Jack P, Kumar A, Flavell AJ.

Mol Gen Genet. 1999 Jul;261(6):883-91.

PMID:
10485278
41.

Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis.

Flavell AJ, Knox MR, Pearce SR, Ellis TH.

Plant J. 1998 Dec;16(5):643-50.

42.

Quantitative genetic analysis of copia retrotransposon activity in inbred Drosophila melanogaster lines.

Nuzhdin SV, Pasyukova EG, Morozova EA, Flavell AJ.

Genetics. 1998 Oct;150(2):755-66.

43.

A new dsRNA binding protein in Drosophila.

Lewis M, Flavell AJ.

Biochem Soc Trans. 1997 Nov;25(4):S642. No abstract available.

PMID:
9450070
44.

Characterization and genomic organization of Ty1-copia group retrotransposons in rye (Secale cereale).

Pearce SR, Harrison G, Heslop-Harrison PJ, Flavell AJ, Kumar A.

Genome. 1997 Oct;40(5):617-25.

PMID:
9352643
45.
46.

Genetic and molecular analysis of smooth, a quantitative trait locus affecting bristle number in Drosophila melanogaster.

zur Lage P, Shrimpton AD, Flavell AJ, Mackay TF, Brown AJ.

Genetics. 1997 Jun;146(2):607-18.

47.

Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP).

Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BB, Powell W.

Mol Gen Genet. 1997 Feb 27;253(6):687-94.

PMID:
9079879
48.

The Ty1-copia group of retrotransposons in plants: genomic organisation, evolution, and use as molecular markers.

Kumar A, Pearce SR, McLean K, Harrison G, Heslop-Harrison JS, Waugh R, Flavell AJ.

Genetica. 1997;100(1-3):205-17.

PMID:
9440274
49.

The chromosomal distributions of Ty1-copia group retrotransposable elements in higher plants and their implications for genome evolution.

Heslop-Harrison JS, Brandes A, Taketa S, Schmidt T, Vershinin AV, Alkhimova EG, Kamm A, Doudrick RL, Schwarzacher T, Katsiotis A, Kubis S, Kumar A, Pearce SR, Flavell AJ, Harrison GE.

Genetica. 1997;100(1-3):197-204.

PMID:
9440273
50.

The evolution of Ty1-copia group retrotransposons in eukaryote genomes.

Flavell AJ, Pearce SR, Heslop-Harrison P, Kumar A.

Genetica. 1997;100(1-3):185-95. Review.

PMID:
9440272

Supplemental Content

Loading ...
Support Center