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Items: 15

1.

Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies.

Intosalmi J, Scott AC, Hays M, Flann N, Yli-Harja O, Lähdesmäki H, Dudley AM, Skupin A.

BMC Mol Cell Biol. 2019 Dec 19;20(1):59. doi: 10.1186/s12860-019-0234-z.

2.

Cell death as a trigger for morphogenesis.

Aguilar B, Ghaffarizadeh A, Johnson CD, Podgorski GJ, Shmulevich I, Flann NS.

PLoS One. 2018 Mar 22;13(3):e0191089. doi: 10.1371/journal.pone.0191089. eCollection 2018.

3.

A computational study of VEGF production by patterned retinal epithelial cell colonies as a model for neovascular macular degeneration.

Baker QB, Podgorski GJ, Vargis E, Flann NS.

J Biol Eng. 2017 Aug 2;11:26. doi: 10.1186/s13036-017-0063-6. eCollection 2017.

4.

Modeling de novo granulation of anaerobic sludge.

Doloman A, Varghese H, Miller CD, Flann NS.

BMC Syst Biol. 2017 Jul 17;11(1):69. doi: 10.1186/s12918-017-0443-z.

5.

Exploiting Self-organization in Bioengineered Systems: A Computational Approach.

Davis D, Doloman A, Podgorski GJ, Vargis E, Flann NS.

Front Bioeng Biotechnol. 2017 Apr 28;5:27. doi: 10.3389/fbioe.2017.00027. eCollection 2017.

6.

Applying attractor dynamics to infer gene regulatory interactions involved in cellular differentiation.

Ghaffarizadeh A, Podgorski GJ, Flann NS.

Biosystems. 2017 May;155:29-41. doi: 10.1016/j.biosystems.2016.12.004. Epub 2017 Feb 28.

PMID:
28254369
7.

Modular genetic regulatory networks increase organization during pattern formation.

Mohamadlou H, Podgorski GJ, Flann NS.

Biosystems. 2016 Aug;146:77-84. doi: 10.1016/j.biosystems.2016.04.004. Epub 2016 Jun 17.

PMID:
27327866
8.

Genome-Wide Mapping of Chromatin State of Mouse Forelimbs.

Eng D, Vogel WK, Flann NS, Gross MK, Kioussi C.

Open Access Bioinformatics. 2014 Sep 10;6(2014):1-11.

9.

Multistable switches and their role in cellular differentiation networks.

Ghaffarizadeh A, Flann NS, Podgorski GJ.

BMC Bioinformatics. 2014;15 Suppl 7:S7. doi: 10.1186/1471-2105-15-S7-S7. Epub 2014 May 28.

10.

Biocellion: accelerating computer simulation of multicellular biological system models.

Kang S, Kahan S, McDermott J, Flann N, Shmulevich I.

Bioinformatics. 2014 Nov 1;30(21):3101-8. doi: 10.1093/bioinformatics/btu498. Epub 2014 Jul 26.

11.

Modeling and visualizing cell type switching.

Ghaffarizadeh A, Podgorski GJ, Flann NS.

Comput Math Methods Med. 2014;2014:293980. doi: 10.1155/2014/293980. Epub 2014 Apr 14.

12.

Maximizing Kolmogorov Complexity for accurate and robust bright field cell segmentation.

Mohamadlou H, Shope JC, Flann NS.

BMC Bioinformatics. 2014 Jan 30;15:32. doi: 10.1186/1471-2105-15-32.

13.

Kolmogorov complexity of epithelial pattern formation: the role of regulatory network configuration.

Flann NS, Mohamadlou H, Podgorski GJ.

Biosystems. 2013 May;112(2):131-8. doi: 10.1016/j.biosystems.2013.03.005. Epub 2013 Mar 14.

PMID:
23499820
14.

Multiobjective optimization based-approach for discovering novel cancer therapies.

Mahoney AW, Podgorski GJ, Flann NS.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):169-84. doi: 10.1109/TCBB.2010.39. Epub 2010 May 7.

PMID:
20479506
15.

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