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Items: 1 to 50 of 138

1.

Taxonomic assignment of uncultured prokaryotes with long range PCR targeting the spectinomycin operon.

Flandrois JP, Brochier-Armanet C, Briolay J, Abrouk D, Schwob G, Normand P, Fernandez MP.

Res Microbiol. 2019 Jul 3. pii: S0923-2508(19)30062-2. doi: 10.1016/j.resmic.2019.06.005. [Epub ahead of print]

PMID:
31279085
2.

The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity.

Duprey A, Taib N, Leonard S, Garin T, Flandrois JP, Nasser W, Brochier-Armanet C, Reverchon S.

Environ Microbiol. 2019 Aug;21(8):2809-2835. doi: 10.1111/1462-2920.14627. Epub 2019 Apr 26.

PMID:
30969462
3.

Highly Reduced Genome of the New Species Mycobacterium uberis, the Causative Agent of Nodular Thelitis and Tuberculoid Scrotitis in Livestock and a Close Relative of the Leprosy Bacilli.

Benjak A, Avanzi C, Benito Y, Breysse F, Chartier C, Boschiroli ML, Fourichon C, Michelet L, Pin D, Flandrois JP, Bruyere P, Dumitrescu O, Cole ST, Lina G.

mSphere. 2018 Oct 3;3(5). pii: e00405-18. doi: 10.1128/mSphere.00405-18.

4.

Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France.

Barbier M, Dumitrescu O, Pichat C, Carret G, Ronnaux-Baron AS, Blasquez G, Godin-Benhaim C, Boisset S, Carricajo A, Jacomo V, Fredenucci I, Pérouse de Montclos M, Genestet C, Flandrois JP, Ader F, Supply P, Lina G, Wirth T, Rasigade JP.

Sci Rep. 2018 Apr 11;8(1):5855. doi: 10.1038/s41598-018-24034-6.

5.

Strain-specific estimation of epidemic success provides insights into the transmission dynamics of tuberculosis.

Rasigade JP, Barbier M, Dumitrescu O, Pichat C, Carret G, Ronnaux-Baron AS, Blasquez G, Godin-Benhaim C, Boisset S, Carricajo A, Jacomo V, Fredenucci I, Pérouse de Montclos M, Flandrois JP, Ader F, Supply P, Lina G, Wirth T.

Sci Rep. 2017 Mar 28;7:45326. doi: 10.1038/srep45326.

6.

Record of Nile seasonality in Nubian neonates.

Martin C, Maureille B, Amiot R, Touzeau A, Royer A, Fourel F, Panczer G, Flandrois JP, Lécuyer C.

Isotopes Environ Health Stud. 2017 Jun;53(3):223-242. doi: 10.1080/10256016.2016.1229667. Epub 2016 Sep 22.

PMID:
28276733
7.

Oxygen isotope fractionation between bird eggshell calcite and body water: application to fossil eggs from Lanzarote (Canary Islands).

Lazzerini N, Lécuyer C, Amiot R, Angst D, Buffetaut E, Fourel F, Daux V, Betancort JF, Flandrois JP, Marco AS, Lomoschitz A.

Naturwissenschaften. 2016 Oct;103(9-10):81. doi: 10.1007/s00114-016-1404-x. Epub 2016 Sep 17.

PMID:
27639729
8.

RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.

Jauffrit F, Penel S, Delmotte S, Rey C, de Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C.

Mol Biol Evol. 2016 Aug;33(8):2170-2. doi: 10.1093/molbev/msw088. Epub 2016 May 5.

PMID:
27189556
9.

Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhône Alpes Region, France.

Pichat C, Couvin D, Carret G, Frédénucci I, Jacomo V, Carricajo A, Boisset S, Dumitrescu O, Flandrois JP, Lina G, Rastogi N.

PLoS One. 2016 Apr 29;11(4):e0153580. doi: 10.1371/journal.pone.0153580. eCollection 2016.

10.

leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences.

Flandrois JP, Perrière G, Gouy M.

BMC Bioinformatics. 2015 Aug 12;16:251. doi: 10.1186/s12859-015-0692-z.

11.

Assessment of polycarbonate filter in a molecular analytical system for the microbiological quality monitoring of recycled waters onboard ISS.

Bechy-Loizeau AL, Flandrois JP, Abaibou H.

Life Sci Space Res (Amst). 2015 Jul;6:29-35. doi: 10.1016/j.lssr.2015.06.002. Epub 2015 Jun 18.

PMID:
26256625
12.

Nontuberculous Mycobacteria: An Underestimated Cause of Bioprosthetic Valve Infective Endocarditis.

Bouchiat C, Saison J, Boisset S, Flandrois JP, Issartel B, Dauwalder O, Benito Y, Jarraud S, Grando J, Boibieux A, Dumitrescu O, Delahaye F, Farhat F, Thivolet-Bejui F, Frieh JP, Vandenesch F.

Open Forum Infect Dis. 2015 Apr 2;2(2):ofv047. doi: 10.1093/ofid/ofv047. eCollection 2015 Apr.

13.

Mycobacterium species related to M. leprae and M. lepromatosis from cows with bovine nodular thelitis.

Pin D, Guérin-Faublée V, Garreau V, Breysse F, Dumitrescu O, Flandrois JP, Lina G.

Emerg Infect Dis. 2014 Dec;20(12):2111-4. doi: 10.3201/eid2012.140184.

14.

Enhanced tetrazolium violet reduction of Salmonella spp. by magnesium addition to the culture media.

Junillon T, Morand L, Flandrois JP.

Food Microbiol. 2014 Sep;42:132-5. doi: 10.1016/j.fm.2014.03.008. Epub 2014 Mar 19.

PMID:
24929728
15.

Optimization of the reactional medium and a food impact study for a colorimetric in situ Salmonella spp. detection method.

Junillon T, Mosticon D, Mallen B, Baril F, Morand L, Michel D, Flandrois JP.

Int J Food Microbiol. 2014 Jul 2;181:48-52. doi: 10.1016/j.ijfoodmicro.2014.04.022. Epub 2014 Apr 28.

PMID:
24819412
16.

MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis.

Flandrois JP, Lina G, Dumitrescu O.

BMC Bioinformatics. 2014 Apr 14;15:107. doi: 10.1186/1471-2105-15-107.

17.

Diminution of 2,3,5-triphenyltetrazolium chloride toxicity on Listeria monocytogenes growth by iron source addition to the culture medium.

Junillon T, Flandrois JP.

Food Microbiol. 2014 Apr;38:1-5. doi: 10.1016/j.fm.2013.07.005. Epub 2013 Jul 31.

PMID:
24290619
18.

Mycobacterium bourgelatii sp. nov., a rapidly growing, non-chromogenic species isolated from the lymph nodes of cattle.

Guérin-Faublée V, Flandrois JP, Pichat C, Boschiroli ML, Lamy B.

Int J Syst Evol Microbiol. 2013 Dec;63(Pt 12):4669-74. doi: 10.1099/ijs.0.051979-0. Epub 2013 Aug 29.

PMID:
23990648
19.

Simplified detection of food-borne pathogens: an in situ high affinity capture and staining concept.

Junillon T, Vimont A, Mosticone D, Mallen B, Baril F, Rozand C, Flandrois JP.

J Microbiol Methods. 2012 Dec;91(3):501-5. doi: 10.1016/j.mimet.2012.09.015. Epub 2012 Sep 25.

PMID:
23017294
20.

Species-driven interpretation guidelines in case of a single-sampling strategy for blood culture.

Leyssene D, Gardes S, Vilquin P, Flandrois JP, Carret G, Lamy B.

Eur J Clin Microbiol Infect Dis. 2011 Dec;30(12):1537-41. doi: 10.1007/s10096-011-1257-3. Epub 2011 Apr 18.

PMID:
21499970
21.

A pharmacologically based multiscale mathematical model of angiogenesis and its use in investigating the efficacy of a new cancer treatment strategy.

Billy F, Ribba B, Saut O, Morre-Trouilhet H, Colin T, Bresch D, Boissel JP, Grenier E, Flandrois JP.

J Theor Biol. 2009 Oct 21;260(4):545-62. doi: 10.1016/j.jtbi.2009.06.026. Epub 2009 Jul 15.

PMID:
19615383
22.

A seven-gene, multilocus, genus-wide approach to the phylogeny of mycobacteria using supertrees.

Mignard S, Flandrois JP.

Int J Syst Evol Microbiol. 2008 Jun;58(Pt 6):1432-41. doi: 10.1099/ijs.0.65658-0.

PMID:
18523191
23.

Identification of Mycobacterium using the EF-Tu encoding (tuf) gene and the tmRNA encoding (ssrA) gene.

Mignard S, Flandrois JP.

J Med Microbiol. 2007 Aug;56(Pt 8):1033-41.

PMID:
17644709
24.

16S rRNA sequencing in routine bacterial identification: a 30-month experiment.

Mignard S, Flandrois JP.

J Microbiol Methods. 2006 Dec;67(3):574-81. Epub 2006 Jul 21.

PMID:
16859787
25.

Rapid identification of Enterobacteriaceae by sequencing DNA gyrase subunit B encoding gene.

Delmas J, Breysse F, Devulder G, Flandrois JP, Chomarat M.

Diagn Microbiol Infect Dis. 2006 Aug;55(4):263-8. Epub 2006 Apr 19.

PMID:
16626902
26.

Use of PCR-restriction enzyme pattern analysis and sequencing database for hsp65 gene-based identification of Nocardia species.

Rodríguez-Nava V, Couble A, Devulder G, Flandrois JP, Boiron P, Laurent F.

J Clin Microbiol. 2006 Feb;44(2):536-46.

27.

[From prevalence to predictive values: considerations on the antimicrobial susceptibility testing dealing with change of susceptibility rates].

Lamy B, Carret G, Flandrois JP, Delignette-Muller ML.

Ann Biol Clin (Paris). 2005 Sep-Oct;63(5):493-502. French.

28.

A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model.

Devulder G, Pérouse de Montclos M, Flandrois JP.

Int J Syst Evol Microbiol. 2005 Jan;55(Pt 1):293-302.

PMID:
15653890
29.

How does susceptibility prevalence impact on the performance of disk diffusion susceptibility testing?

Lamy B, Carret G, Flandrois JP, Delignette-Muller ML.

Diagn Microbiol Infect Dis. 2004 Jun;49(2):131-9.

PMID:
15183863
30.

BIBI, a bioinformatics bacterial identification tool.

Devulder G, Perrière G, Baty F, Flandrois JP.

J Clin Microbiol. 2003 Apr;41(4):1785-7.

31.

Modeling the lag time of Listeria monocytogenes from viable count enumeration and optical density data.

Baty F, Flandrois JP, Delignette-Muller ML.

Appl Environ Microbiol. 2002 Dec;68(12):5816-25.

32.

What is the relevance of obtaining multiple blood samples for culture? A comprehensive model to optimize the strategy for diagnosing bacteremia.

Lamy B, Roy P, Carret G, Flandrois JP, Delignette-Muller ML.

Clin Infect Dis. 2002 Oct 1;35(7):842-50. Epub 2002 Sep 10.

PMID:
12228821
33.

Modelling the competitive growth of Listeria monocytogenes and Listeria innocua in enrichment broths.

Cornu M, Kalmokoff M, Flandrois JP.

Int J Food Microbiol. 2002 Mar;73(2-3):261-74.

PMID:
11934034
34.

A mathematical model describing the thermal virus inactivation.

Noël C, Charles S, Françon A, Flandrois JP.

Vaccine. 2001 May 14;19(25-26):3575-82.

PMID:
11348725
35.

Fitness and competitive growth advantage of new gentamicin-susceptible MRSA clones spreading in French hospitals.

Laurent F, Lelièvre H, Cornu M, Vandenesch F, Carret G, Etienne J, Flandrois JP.

J Antimicrob Chemother. 2001 Mar;47(3):277-83.

PMID:
11222560
36.

Characterization of unexpected growth of Escherichia coli O157:H7 by modeling.

Cornu M, Delignette-Muller ML, Flandrois JP.

Appl Environ Microbiol. 1999 Dec;65(12):5322-7.

37.

A model describing the relationship between regrowth lag time and mild temperature increase for Listeria monocytogenes.

Bréand S, Fardel G, Flandrois JP, Rosso L, Tomassone R.

Int J Food Microbiol. 1999 Feb 18;46(3):251-61.

PMID:
10100905
38.

Saccharomyces boulardii fungemia in a patient receiving Ultra-levure therapy.

Fredenucci I, Chomarat M, Boucaud C, Flandrois JP.

Clin Infect Dis. 1998 Jul;27(1):222-3. No abstract available.

PMID:
9675488
39.

Model of the influence of time and mild temperature on Listeria monocytogenes nonlinear survival curves.

Bréand S, Fardel G, Flandrois JP, Rosso L, Tomassone R.

Int J Food Microbiol. 1998 Apr 14;40(3):185-95.

PMID:
9620126
40.

A model describing the relationship between lag time and mild temperature increase duration.

Bréand S, Fardel G, Flandrois JP, Rosso L, Tomassone R.

Int J Food Microbiol. 1997 Sep 16;38(2-3):157-67.

PMID:
9506281
41.

Reappraisal of the effect of temperature on the growth kinetics of Aeromonas salmonicida.

Guérin-Faublée V, Charles S, Chomarat M, Flandrois JP.

Lett Appl Microbiol. 1997 Nov;25(5):363-6.

42.

Influence of atmospheric conditions during incubation on the susceptibilities of Streptococcus pneumoniae isolates to five beta-lactam antibiotics.

Chomarat M, Chollet L, Peyret M, Flandrois JP.

J Antimicrob Chemother. 1997 Oct;40(4):599-601. No abstract available.

PMID:
9372434
43.

Homogeneous two-site immunometric assay kinetics as a theoretical tool for data analysis.

Zuber E, Mathis G, Flandrois JP.

Anal Biochem. 1997 Aug 15;251(1):79-88.

PMID:
9300086
44.

Simple relationship between acid dissociation constant and minimal pH for microbial growth in laboratory medium.

Rosso L, Zuber E, Pichat C, Flandrois JP.

Int J Food Microbiol. 1997 Mar 18;35(1):75-81.

PMID:
9081228
45.

A descriptive model for the kinetics of a homogeneous fluorometric immunoassay.

Zuber E, Rosso L, Darbouret B, Socquet F, Mathis G, Flandrois JP.

J Immunoassay. 1997 Feb;18(1):21-47.

PMID:
9139047
46.

Differential growth of Listeria monocytogenes at 4 and 8°C: Consequences for the Shelf Life of Chilled Products.

Rosso L, Bajard S, Flandrois JP, Lahellec C, Fournaud J, Veit P.

J Food Prot. 1996 Sep;59(9):944-949. doi: 10.4315/0362-028X-59.9.944.

PMID:
31159105
47.

Application of a modified disc diffusion technique to antimicrobial susceptibility testing of Vibrio anguillarum and Aeromonas salmonicida clinical isolates.

Guérin-Faublée V, Delignette-Muller ML, Vigneulle M, Flandrois JP.

Vet Microbiol. 1996 Jul;51(1-2):137-49.

PMID:
8828130
48.

An economic approach to the MIC.

Chapuis C, Delignette-Muller ML, Flandrois JP.

Zentralbl Bakteriol. 1996 Jun;284(1):67-74.

PMID:
8837370
49.

The particular behaviour of Listeria monocytogenes under sub-optimal conditions.

Bajard S, Rosso L, Fardel G, Flandrois JP.

Int J Food Microbiol. 1996 Apr;29(2-3):201-11.

PMID:
8796423
50.

Accuracy of microbial growth predictions with square root and polynomial models.

Delignette-Muller ML, Rosso L, Flandrois JP.

Int J Food Microbiol. 1995 Oct;27(2-3):139-46.

PMID:
8579985

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