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Items: 42

1.

MEG-BIDS, the brain imaging data structure extended to magnetoencephalography.

Niso G, Gorgolewski KJ, Bock E, Brooks TL, Flandin G, Gramfort A, Henson RN, Jas M, Litvak V, T Moreau J, Oostenveld R, Schoffelen JM, Tadel F, Wexler J, Baillet S.

Sci Data. 2018 Jun 19;5:180110. doi: 10.1038/sdata.2018.110.

2.

Boutiques: a flexible framework to integrate command-line applications in computing platforms.

Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CRG, Hayot-Sasson V, Quirion PO, Rioux P, Rousseau MÉ, Evans AC.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy016.

3.

Analysis of family-wise error rates in statistical parametric mapping using random field theory.

Flandin G, Friston KJ.

Hum Brain Mapp. 2017 Nov 1. doi: 10.1002/hbm.23839. [Epub ahead of print]

PMID:
29091338
4.

Reconstructing anatomy from electro-physiological data.

López JD, Valencia F, Flandin G, Penny W, Barnes GR.

Neuroimage. 2017 Dec;163:480-486. doi: 10.1016/j.neuroimage.2017.06.049. Epub 2017 Jul 4.

5.

Functional Sensitivity of 2D Simultaneous Multi-Slice Echo-Planar Imaging: Effects of Acceleration on g-factor and Physiological Noise.

Todd N, Josephs O, Zeidman P, Flandin G, Moeller S, Weiskopf N.

Front Neurosci. 2017 Mar 29;11:158. doi: 10.3389/fnins.2017.00158. eCollection 2017.

6.

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA.

PLoS Comput Biol. 2017 Mar 9;13(3):e1005209. doi: 10.1371/journal.pcbi.1005209. eCollection 2017 Mar.

7.

Sharing brain mapping statistical results with the neuroimaging data model.

Maumet C, Auer T, Bowring A, Chen G, Das S, Flandin G, Ghosh S, Glatard T, Gorgolewski KJ, Helmer KG, Jenkinson M, Keator DB, Nichols BN, Poline JB, Reynolds R, Sochat V, Turner J, Nichols TE.

Sci Data. 2016 Dec 6;3:160102. doi: 10.1038/sdata.2016.102.

8.

Physiological basis of vascular autocalibration (VasA): Comparison to hypercapnia calibration methods.

Kazan SM, Huber L, Flandin G, Ivanov D, Bandettini P, Weiskopf N.

Magn Reson Med. 2016 Nov 9. doi: 10.1002/mrm.26494. [Epub ahead of print]

9.

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.

Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA.

Sci Data. 2016 Jun 21;3:160044. doi: 10.1038/sdata.2016.44.

10.

Sensor space group analysis for fNIRS data.

Tak S, Uga M, Flandin G, Dan I, Penny WD.

J Neurosci Methods. 2016 May 1;264:103-112. doi: 10.1016/j.jneumeth.2016.03.003. Epub 2016 Mar 4.

11.

Vascular autorescaling of fMRI (VasA fMRI) improves sensitivity of population studies: A pilot study.

Kazan SM, Mohammadi S, Callaghan MF, Flandin G, Huber L, Leech R, Kennerley A, Windischberger C, Weiskopf N.

Neuroimage. 2016 Jan 1;124(Pt A):794-805. doi: 10.1016/j.neuroimage.2015.09.033. Epub 2015 Sep 28.

12.

Evaluation of 2D multiband EPI imaging for high-resolution, whole-brain, task-based fMRI studies at 3T: Sensitivity and slice leakage artifacts.

Todd N, Moeller S, Auerbach EJ, Yacoub E, Flandin G, Weiskopf N.

Neuroimage. 2016 Jan 1;124(Pt A):32-42. doi: 10.1016/j.neuroimage.2015.08.056. Epub 2015 Sep 1.

13.

Objective Bayesian fMRI analysis-a pilot study in different clinical environments.

Magerkurth J, Mancini L, Penny W, Flandin G, Ashburner J, Micallef C, De Vita E, Daga P, White MJ, Buckley C, Yamamoto AK, Ourselin S, Yousry T, Thornton JS, Weiskopf N.

Front Neurosci. 2015 May 12;9:168. doi: 10.3389/fnins.2015.00168. eCollection 2015.

14.

Resting state functional MRI in Parkinson's disease: the impact of deep brain stimulation on 'effective' connectivity.

Kahan J, Urner M, Moran R, Flandin G, Marreiros A, Mancini L, White M, Thornton J, Yousry T, Zrinzo L, Hariz M, Limousin P, Friston K, Foltynie T.

Brain. 2014 Apr;137(Pt 4):1130-44. doi: 10.1093/brain/awu027. Epub 2014 Feb 24.

15.

Set-level threshold-free tests on the intrinsic volumes of SPMs.

Barnes GR, Ridgway GR, Flandin G, Woolrich M, Friston K.

Neuroimage. 2013 Mar;68:133-40. doi: 10.1016/j.neuroimage.2012.11.046. Epub 2012 Dec 12.

16.

Convolution models for induced electromagnetic responses.

Litvak V, Jha A, Flandin G, Friston K.

Neuroimage. 2013 Jan 1;64:388-98. doi: 10.1016/j.neuroimage.2012.09.014. Epub 2012 Sep 14.

17.

Learning and generalization under ambiguity: an fMRI study.

Chumbley JR, Flandin G, Bach DR, Daunizeau J, Fehr E, Dolan RJ, Friston KJ.

PLoS Comput Biol. 2012 Jan;8(1):e1002346. doi: 10.1371/journal.pcbi.1002346. Epub 2012 Jan 19.

18.

The problem of low variance voxels in statistical parametric mapping; a new hat avoids a 'haircut'.

Ridgway GR, Litvak V, Flandin G, Friston KJ, Penny WD.

Neuroimage. 2012 Feb 1;59(3):2131-41. doi: 10.1016/j.neuroimage.2011.10.027. Epub 2011 Oct 18.

19.

EEG and MEG data analysis in SPM8.

Litvak V, Mattout J, Kiebel S, Phillips C, Henson R, Kilner J, Barnes G, Oostenveld R, Daunizeau J, Flandin G, Penny W, Friston K.

Comput Intell Neurosci. 2011;2011:852961. doi: 10.1155/2011/852961. Epub 2011 Mar 6.

20.

Probing the cortical network underlying the psychological refractory period: a combined EEG-fMRI study.

Hesselmann G, Flandin G, Dehaene S.

Neuroimage. 2011 Jun 1;56(3):1608-21. doi: 10.1016/j.neuroimage.2011.03.017. Epub 2011 Mar 21.

PMID:
21397701
21.

Rewarding feedback after correct visual discriminations has both general and specific influences on visual cortex.

Weil RS, Furl N, Ruff CC, Symmonds M, Flandin G, Dolan RJ, Driver J, Rees G.

J Neurophysiol. 2010 Sep;104(3):1746-57. doi: 10.1152/jn.00870.2009. Epub 2010 Jul 21.

22.

Multinomial inference on distributed responses in SPM.

Chumbley JR, Flandin G, Seghier ML, Friston KJ.

Neuroimage. 2010 Oct 15;53(1):161-70. doi: 10.1016/j.neuroimage.2010.05.076. Epub 2010 Jun 4.

23.

Modelling event-related skin conductance responses.

Bach DR, Flandin G, Friston KJ, Dolan RJ.

Int J Psychophysiol. 2010 Mar;75(3):349-56. doi: 10.1016/j.ijpsycho.2010.01.005. Epub 2010 Jan 20.

24.

A parametric empirical Bayesian framework for fMRI-constrained MEG/EEG source reconstruction.

Henson RN, Flandin G, Friston KJ, Mattout J.

Hum Brain Mapp. 2010 Oct;31(10):1512-31. doi: 10.1002/hbm.20956.

25.

Topological FDR for neuroimaging.

Chumbley J, Worsley K, Flandin G, Friston K.

Neuroimage. 2010 Feb 15;49(4):3057-64. doi: 10.1016/j.neuroimage.2009.10.090. Epub 2009 Nov 24.

26.

Predicting language lateralization from gray matter.

Josse G, Kherif F, Flandin G, Seghier ML, Price CJ.

J Neurosci. 2009 Oct 28;29(43):13516-23. doi: 10.1523/JNEUROSCI.1680-09.2009.

27.

Time-series analysis for rapid event-related skin conductance responses.

Bach DR, Flandin G, Friston KJ, Dolan RJ.

J Neurosci Methods. 2009 Nov 15;184(2):224-34. doi: 10.1016/j.jneumeth.2009.08.005. Epub 2009 Aug 15.

28.

Graph-partitioned spatial priors for functional magnetic resonance images.

Harrison LM, Penny W, Flandin G, Ruff CC, Weiskopf N, Friston KJ.

Neuroimage. 2008 Dec;43(4):694-707. doi: 10.1016/j.neuroimage.2008.08.012. Epub 2008 Aug 23.

29.

Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: application to unilateral visual stimulation.

Dubois A, Hérard AS, Flandin G, Duchesnay E, Besret L, Frouin V, Hantraye P, Bonvento G, Delzescaux T.

Neuroimage. 2008 Apr 1;40(2):482-494. doi: 10.1016/j.neuroimage.2007.11.054. Epub 2007 Dec 15.

PMID:
18234520
30.

Functional optical signal analysis: a software tool for near-infrared spectroscopy data processing incorporating statistical parametric mapping.

Koh PH, Glaser DE, Flandin G, Kiebel S, Butterworth B, Maki A, Delpy DT, Elwell CE.

J Biomed Opt. 2007 Nov-Dec;12(6):064010. doi: 10.1117/1.2804092.

PMID:
18163826
31.

Multiple sparse priors for the M/EEG inverse problem.

Friston K, Harrison L, Daunizeau J, Kiebel S, Phillips C, Trujillo-Barreto N, Henson R, Flandin G, Mattout J.

Neuroimage. 2008 Feb 1;39(3):1104-20. Epub 2007 Oct 10.

PMID:
17997111
32.

Bayesian fMRI data analysis with sparse spatial basis function priors.

Flandin G, Penny WD.

Neuroimage. 2007 Feb 1;34(3):1108-25. Epub 2006 Dec 5.

PMID:
17157034
33.

Bayesian comparison of spatially regularised general linear models.

Penny W, Flandin G, Trujillo-Barreto N.

Hum Brain Mapp. 2007 Apr;28(4):275-93.

PMID:
17133400
34.

Dopamine-dependent prediction errors underpin reward-seeking behaviour in humans.

Pessiglione M, Seymour B, Flandin G, Dolan RJ, Frith CD.

Nature. 2006 Aug 31;442(7106):1042-5. Epub 2006 Aug 23.

35.

Anatomically informed interpolation of fMRI data on the cortical surface.

Grova C, Makni S, Flandin G, Ciuciu P, Gotman J, Poline JB.

Neuroimage. 2006 Jul 15;31(4):1475-86. Epub 2006 May 2.

PMID:
16650778
36.

Identification of degenerate neuronal systems based on intersubject variability.

Noppeney U, Penny WD, Price CJ, Flandin G, Friston KJ.

Neuroimage. 2006 Apr 15;30(3):885-90. Epub 2005 Nov 21.

PMID:
16300969
37.

Dealing with the shortcomings of spatial normalization: multi-subject parcellation of fMRI datasets.

Thirion B, Flandin G, Pinel P, Roche A, Ciuciu P, Poline JB.

Hum Brain Mapp. 2006 Aug;27(8):678-93.

PMID:
16281292
38.

Retinotopic organization of visual mental images as revealed by functional magnetic resonance imaging.

Klein I, Dubois J, Mangin JF, Kherif F, Flandin G, Poline JB, Denis M, Kosslyn SM, Le Bihan D.

Brain Res Cogn Brain Res. 2004 Dec;22(1):26-31.

PMID:
15561497
39.

Automatized clustering and functional geometry of human parietofrontal networks for language, space, and number.

Simon O, Kherif F, Flandin G, Poline JB, Rivière D, Mangin JF, Le Bihan D, Dehaene S.

Neuroimage. 2004 Nov;23(3):1192-202.

PMID:
15528119
40.

Group analysis in functional neuroimaging: selecting subjects using similarity measures.

Kherif F, Poline JB, Mériaux S, Benali H, Flandin G, Brett M.

Neuroimage. 2003 Dec;20(4):2197-208.

41.

Functional connectivity: studying nonlinear, delayed interactions between BOLD signals.

Lahaye PJ, Poline JB, Flandin G, Dodel S, Garnero L.

Neuroimage. 2003 Oct;20(2):962-74.

PMID:
14568466
42.

Multivariate model specification for fMRI data.

Kherif F, Poline JB, Flandin G, Benali H, Simon O, Dehaene S, Worsley KJ.

Neuroimage. 2002 Aug;16(4):1068-83.

PMID:
12202094

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