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Items: 19

1.

GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity.

Flagel LE, Blackman BK, Fishman L, Monnahan PJ, Sweigart A, Kelly JK.

PLoS Comput Biol. 2019 Apr 15;15(4):e1006949. doi: 10.1371/journal.pcbi.1006949. eCollection 2019 Apr.

2.

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias.

Li L, Briskine R, Schaefer R, Schnable PS, Myers CL, Flagel LE, Springer NM, Muehlbauer GJ.

BMC Genomics. 2016 Nov 4;17(1):875.

3.

Rapid molecular evolution across amniotes of the IIS/TOR network.

McGaugh SE, Bronikowski AM, Kuo CH, Reding DM, Addis EA, Flagel LE, Janzen FJ, Schwartz TS.

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):7055-60. doi: 10.1073/pnas.1419659112. Epub 2015 May 19.

4.

Genetic markers for western corn rootworm resistance to Bt toxin.

Flagel LE, Swarup S, Chen M, Bauer C, Wanjugi H, Carroll M, Hill P, Tuscan M, Bansal R, Flannagan R, Clark TL, Michel AP, Head GP, Goldman BS.

G3 (Bethesda). 2015 Jan 7;5(3):399-405. doi: 10.1534/g3.114.016485.

5.

Evidence of natural selection acting on a polymorphic hybrid incompatibility locus in Mimulus.

Sweigart AL, Flagel LE.

Genetics. 2015 Feb;199(2):543-54. doi: 10.1534/genetics.114.171819. Epub 2014 Nov 25.

6.

Western corn rootworm (Diabrotica virgifera virgifera) transcriptome assembly and genomic analysis of population structure.

Flagel LE, Bansal R, Kerstetter RA, Chen M, Carroll M, Flannagan R, Clark T, Goldman BS, Michel AP.

BMC Genomics. 2014 Mar 14;15:195. doi: 10.1186/1471-2164-15-195.

7.

The standing pool of genomic structural variation in a natural population of Mimulus guttatus.

Flagel LE, Willis JH, Vision TJ.

Genome Biol Evol. 2014 Jan;6(1):53-64. doi: 10.1093/gbe/evt199.

8.

Homoeolog expression bias and expression level dominance in allopolyploids.

Grover CE, Gallagher JP, Szadkowski EP, Yoo MJ, Flagel LE, Wendel JF.

New Phytol. 2012 Dec;196(4):966-71. doi: 10.1111/j.1469-8137.2012.04365.x. Epub 2012 Oct 4. No abstract available.

9.

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton.

Flagel LE, Wendel JF, Udall JA.

BMC Genomics. 2012 Jul 6;13:302. doi: 10.1186/1471-2164-13-302.

10.

Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium).

Bao Y, Hu G, Flagel LE, Salmon A, Bezanilla M, Paterson AH, Wang Z, Wendel JF.

Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21152-7. doi: 10.1073/pnas.1115926109. Epub 2011 Dec 12.

11.

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

Flagel LE, Wendel JF.

New Phytol. 2010 Apr;186(1):184-93. doi: 10.1111/j.1469-8137.2009.03107.x. Epub 2009 Nov 19.

12.

Gene duplication and evolutionary novelty in plants.

Flagel LE, Wendel JF.

New Phytol. 2009 Aug;183(3):557-64. doi: 10.1111/j.1469-8137.2009.02923.x. Epub 2009 Jun 23. Review.

13.

Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton.

Flagel LE, Chen L, Chaudhary B, Wendel JF.

J Hered. 2009 Jul-Aug;100(4):487-90. doi: 10.1093/jhered/esp003. Epub 2009 Mar 5.

PMID:
19264969
14.

Evolutionary genetics of genome merger and doubling in plants.

Doyle JJ, Flagel LE, Paterson AH, Rapp RA, Soltis DE, Soltis PS, Wendel JF.

Annu Rev Genet. 2008;42:443-61. doi: 10.1146/annurev.genet.42.110807.091524. Review.

PMID:
18983261
15.

Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea.

Flagel LE, Rapp RA, Grover CE, Widrlechner MP, Hawkins J, Grafenberg JL, Alvarez I, Chung GY, Wendel JF.

Am J Bot. 2008 Jun;95(6):756-65. doi: 10.3732/ajb.0800049.

16.

PHENETIC COMPARISON OF SEVEN Echinacea SPECIES BASED ON IMMUNOMODULATORY CHARACTERISTICS.

Senchina DS, Flagel LE, Wendel JF, Kohut ML.

Econ Bot. 2006 Sep;60(3):205-211.

17.

Spotted cotton oligonucleotide microarrays for gene expression analysis.

Udall JA, Flagel LE, Cheung F, Woodward AW, Hovav R, Rapp RA, Swanson JM, Lee JJ, Gingle AR, Nettleton D, Town CD, Chen ZJ, Wendel JF.

BMC Genomics. 2007 Mar 27;8:81.

18.
19.

Efficient soybean transformation using hygromycin B selection in the cotyledonary-node method.

Olhoft PM, Flagel LE, Donovan CM, Somers DA.

Planta. 2003 Mar;216(5):723-35. Epub 2002 Nov 1.

PMID:
12624759

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