Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 84

1.

Characterisation of three novel β-1,3 glucanases from the medically important house dust mite Dermatophagoides pteronyssinus (airmid).

Waldron R, McGowan J, Gordon N, Mitchell EB, Fitzpatrick DA, Doyle S.

Insect Biochem Mol Biol. 2019 Dec;115:103242. doi: 10.1016/j.ibmb.2019.103242. Epub 2019 Sep 11.

PMID:
31520716
2.

Whole Genome Sequence of the Commercially Relevant Mushroom Strain Agaricus bisporus var. bisporus ARP23.

O'Connor E, McGowan J, McCarthy CGP, Amini A, Grogan H, Fitzpatrick DA.

G3 (Bethesda). 2019 Oct 7;9(10):3057-3066. doi: 10.1534/g3.119.400563.

3.

Insights into the transcriptomic response of the plant engineering bacterium Ensifer adhaerens OV14 during transformation.

Zuniga-Soto E, Fitzpatrick DA, Doohan FM, Mullins E.

Sci Rep. 2019 Jul 17;9(1):10344. doi: 10.1038/s41598-019-44648-8.

4.

Pangloss: A Tool for Pan-Genome Analysis of Microbial Eukaryotes.

McCarthy CGP, Fitzpatrick DA.

Genes (Basel). 2019 Jul 10;10(7). pii: E521. doi: 10.3390/genes10070521.

5.

Control of Development, Secondary Metabolism and Light-Dependent Carotenoid Biosynthesis by the Velvet Complex of Neurospora crassa.

Bayram ÖS, Dettmann A, Karahoda B, Moloney NM, Ormsby T, McGowan J, Cea-Sánchez S, Miralles-Durán A, Brancini GTP, Luque EM, Fitzpatrick DA, Cánovas D, Corrochano LM, Doyle S, Selker EU, Seiler S, Bayram Ö.

Genetics. 2019 Jul;212(3):691-710. doi: 10.1534/genetics.119.302277. Epub 2019 May 8.

PMID:
31068340
6.

Proteome and allergenome of the European house dust mite Dermatophagoides pteronyssinus.

Waldron R, McGowan J, Gordon N, McCarthy C, Mitchell EB, Fitzpatrick DA.

PLoS One. 2019 May 1;14(5):e0216171. doi: 10.1371/journal.pone.0216171. eCollection 2019.

7.

Pan-genome analyses of model fungal species.

McCarthy CGP, Fitzpatrick DA.

Microb Genom. 2019 Feb;5(2). doi: 10.1099/mgen.0.000243. Epub 2019 Feb 4.

8.

The Magical Horizontal Force Muscle? A Preliminary Study Examining the "Force-Vector" Theory.

Fitzpatrick DA, Cimadoro G, Cleather DJ.

Sports (Basel). 2019 Jan 22;7(2). pii: E30. doi: 10.3390/sports7020030.

9.

Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi.

Rahman F, Hassan M, Hanano A, Fitzpatrick DA, McCarthy CGP, Murphy DJ.

BMC Genomics. 2018 Dec 28;19(1):976. doi: 10.1186/s12864-018-5334-1.

10.

Comparative Analysis of Oomycete Genome Evolution Using the Oomycete Gene Order Browser (OGOB).

McGowan J, Byrne KP, Fitzpatrick DA.

Genome Biol Evol. 2019 Jan 1;11(1):189-206. doi: 10.1093/gbe/evy267.

11.

The involvement of the low-oxygen-activated locus of Burkholderia cenocepacia in adaptation during cystic fibrosis infection.

Cullen L, O'Connor A, McCormack S, Owens RA, Holt GS, Collins C, Callaghan M, Doyle S, Smith D, Schaffer K, Fitzpatrick DA, McClean S.

Sci Rep. 2018 Sep 6;8(1):13386. doi: 10.1038/s41598-018-31556-6.

12.

Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae (CTG-Ser) clade.

O'Brien CE, McCarthy CGP, Walshe AE, Shaw DR, Sumski DA, Krassowski T, Fitzpatrick DA, Butler G.

PLoS One. 2018 Jun 26;13(6):e0198957. doi: 10.1371/journal.pone.0198957. eCollection 2018.

13.

Genomic, Network, and Phylogenetic Analysis of the Oomycete Effector Arsenal.

McGowan J, Fitzpatrick DA.

mSphere. 2017 Nov 22;2(6). pii: e00408-17. doi: 10.1128/mSphere.00408-17. eCollection 2017 Nov-Dec.

14.

Multiple Approaches to Phylogenomic Reconstruction of the Fungal Kingdom.

McCarthy CGP, Fitzpatrick DA.

Adv Genet. 2017;100:211-266. doi: 10.1016/bs.adgen.2017.09.006. Epub 2017 Nov 6.

PMID:
29153401
15.

Proteomic Characterization of Armillaria mellea Reveals Oxidative Stress Response Mechanisms and Altered Secondary Metabolism Profiles.

Collins C, Hurley R, Almutlaqah N, O'Keeffe G, Keane TM, Fitzpatrick DA, Owens RA.

Microorganisms. 2017 Sep 17;5(3). pii: E60. doi: 10.3390/microorganisms5030060.

16.

Draft Genome Sequence of Dermatophagoides pteronyssinus, the European House Dust Mite.

Waldron R, McGowan J, Gordon N, McCarthy C, Mitchell EB, Doyle S, Fitzpatrick DA.

Genome Announc. 2017 Aug 10;5(32). pii: e00789-17. doi: 10.1128/genomeA.00789-17.

17.

Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes.

McCarthy CGP, Fitzpatrick DA.

mSphere. 2017 Apr 12;2(2). pii: e00095-17. doi: 10.1128/mSphere.00095-17. eCollection 2017 Mar-Apr.

18.

Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages.

McCarthy CG, Fitzpatrick DA.

mSphere. 2016 Sep 14;1(5). pii: e00195-16. doi: 10.1128/mSphere.00195-16. eCollection 2016 Sep-Oct.

19.

Towards understanding the gliotoxin detoxification mechanism: in vivo thiomethylation protects yeast from gliotoxin cytotoxicity.

Smith EB, Dolan SK, Fitzpatrick DA, Doyle S, Jones GW.

Microb Cell. 2016 Feb 19;3(3):120-125. doi: 10.15698/mic2016.03.485.

20.

Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus.

Owens RA, O'Keeffe G, Smith EB, Dolan SK, Hammel S, Sheridan KJ, Fitzpatrick DA, Keane TM, Jones GW, Doyle S.

Eukaryot Cell. 2015 Sep;14(9):941-57. doi: 10.1128/EC.00055-15. Epub 2015 Jul 6.

21.

A role for the Parkinson's disease protein DJ-1 as a chaperone and antioxidant in the anhydrobiotic nematode Panagrolaimus superbus.

Culleton BA, Lall P, Kinsella GK, Doyle S, McCaffrey J, Fitzpatrick DA, Burnell AM.

Cell Stress Chaperones. 2015 Jan;20(1):121-37. doi: 10.1007/s12192-014-0531-6. Epub 2014 Oct 16.

22.

RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus.

O'Keeffe G, Hammel S, Owens RA, Keane TM, Fitzpatrick DA, Jones GW, Doyle S.

BMC Genomics. 2014 Oct 14;15:894. doi: 10.1186/1471-2164-15-894.

23.

Regulation of nonribosomal peptide synthesis: bis-thiomethylation attenuates gliotoxin biosynthesis in Aspergillus fumigatus.

Dolan SK, Owens RA, O'Keeffe G, Hammel S, Fitzpatrick DA, Jones GW, Doyle S.

Chem Biol. 2014 Aug 14;21(8):999-1012. doi: 10.1016/j.chembiol.2014.07.006.

24.

The evolutionary history of the genes involved in the biosynthesis of the antioxidant ergothioneine.

Jones GW, Doyle S, Fitzpatrick DA.

Gene. 2014 Oct 1;549(1):161-70. doi: 10.1016/j.gene.2014.07.065. Epub 2014 Jul 26.

PMID:
25068406
25.

Endobronchial cryotherapy facilitates end-stage treatment options in patients with bronchial stenosis: A case series.

Fitzmaurice GJ, Redmond KC, Fitzpatrick DA, Bartosik W.

Ann Thorac Med. 2014 Apr;9(2):120-3. doi: 10.4103/1817-1737.128861.

26.

Global transcript and phenotypic analysis of yeast cells expressing Ssa1, Ssa2, Ssa3 or Ssa4 as sole source of cytosolic Hsp70-Ssa chaperone activity.

Hasin N, Cusack SA, Ali SS, Fitzpatrick DA, Jones GW.

BMC Genomics. 2014 Mar 14;15:194. doi: 10.1186/1471-2164-15-194.

27.

Different outcomes for the MYB floral symmetry genes DIVARICATA and RADIALIS during the evolution of derived actinomorphy in Plantago.

Reardon W, Gallagher P, Nolan KM, Wright H, Cardeñosa-Rubio MC, Bragalini C, Lee CS, Fitzpatrick DA, Corcoran K, Wolff K, Nugent JM.

New Phytol. 2014 Apr;202(2):716-25. doi: 10.1111/nph.12682. Epub 2014 Jan 27.

28.

Epidemiological and virological investigations of equine influenza outbreaks in Ireland (2010-2012).

Gildea S, Fitzpatrick DA, Cullinane A.

Influenza Other Respir Viruses. 2013 Dec;7 Suppl 4:61-72. doi: 10.1111/irv.12192.

29.

A pluralistic account of homology: adapting the models to the data.

Haggerty LS, Jachiet PA, Hanage WP, Fitzpatrick DA, Lopez P, O'Connell MJ, Pisani D, Wilkinson M, Bapteste E, McInerney JO.

Mol Biol Evol. 2014 Mar;31(3):501-16. doi: 10.1093/molbev/mst228. Epub 2013 Nov 22. Review.

30.
31.

Insight into the family of Na+/Ca2+ exchangers of Caenorhabditis elegans.

Sharma V, He C, Sacca-Schaeffer J, Brzozowski E, Martin-Herranz DE, Mendelowitz Z, Fitzpatrick DA, O'Halloran DM.

Genetics. 2013 Oct;195(2):611-9. doi: 10.1534/genetics.113.153106. Epub 2013 Jul 26.

32.

Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system.

Collins C, Keane TM, Turner DJ, O'Keeffe G, Fitzpatrick DA, Doyle S.

J Proteome Res. 2013 Jun 7;12(6):2552-70. doi: 10.1021/pr301131t. Epub 2013 May 28.

33.

Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling.

Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, Paponov I, Finkler A, Heng Tan CS, Hutchins AP, Weinmeier T, Rattei T, Chu JS, Gimenez G, Irimia M, Rigden DJ, Fitzpatrick DA, Lorenzo-Morales J, Bateman A, Chiu CH, Tang P, Hegemann P, Fromm H, Raoult D, Greub G, Miranda-Saavedra D, Chen N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus BJ.

Genome Biol. 2013 Feb 1;14(2):R11. doi: 10.1186/gb-2013-14-2-r11.

34.

Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network.

Fitzpatrick DA, O'Halloran DM.

Int J Evol Biol. 2012;2012:548081. doi: 10.1155/2012/548081. Epub 2012 Sep 28.

35.

Molecular characterization of an adaptive response to alkylating agents in the opportunistic pathogen Aspergillus fumigatus.

O'Hanlon KA, Margison GP, Hatch A, Fitzpatrick DA, Owens RA, Doyle S, Jones GW.

Nucleic Acids Res. 2012 Sep;40(16):7806-20. doi: 10.1093/nar/gks522. Epub 2012 Jun 4.

36.

Assessment of inactivating stop codon mutations in forty Saccharomyces cerevisiae strains: implications for [PSI] prion- mediated phenotypes.

Fitzpatrick DA, O'Brien J, Moran C, Hasin N, Kenny E, Cormican P, Gates A, Morris DW, Jones GW.

PLoS One. 2011;6(12):e28684. doi: 10.1371/journal.pone.0028684. Epub 2011 Dec 15.

37.

Horizontal gene transfer in fungi.

Fitzpatrick DA.

FEMS Microbiol Lett. 2012 Apr;329(1):1-8. doi: 10.1111/j.1574-6968.2011.02465.x. Epub 2011 Dec 15. Review.

38.

Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

Medina EM, Jones GW, Fitzpatrick DA.

J Mol Evol. 2011 Oct;73(3-4):116-33. doi: 10.1007/s00239-011-9461-4. Epub 2011 Sep 22.

PMID:
21938499
39.

Universally distributed single-copy genes indicate a constant rate of horizontal transfer.

Creevey CJ, Doerks T, Fitzpatrick DA, Raes J, Bork P.

PLoS One. 2011;6(8):e22099. doi: 10.1371/journal.pone.0022099. Epub 2011 Aug 5.

40.

The copper regulon of the human fungal pathogen Cryptococcus neoformans H99.

Ding C, Yin J, Tovar EM, Fitzpatrick DA, Higgins DG, Thiele DJ.

Mol Microbiol. 2011 Sep;81(6):1560-76. doi: 10.1111/j.1365-2958.2011.07794.x. Epub 2011 Aug 23.

41.

A randomized trial (Irish clinical oncology research group 97-01) comparing short versus protracted neoadjuvant hormonal therapy before radiotherapy for localized prostate cancer.

Armstrong JG, Gillham CM, Dunne MT, Fitzpatrick DA, Finn MA, Cannon ME, Taylor JC, O'Shea CM, Buckney SJ, Thirion PG.

Int J Radiat Oncol Biol Phys. 2011 Sep 1;81(1):35-45. doi: 10.1016/j.ijrobp.2010.04.065. Epub 2010 Aug 25.

PMID:
20797824
42.

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser.

Fitzpatrick DA, O'Gaora P, Byrne KP, Butler G.

BMC Genomics. 2010 May 10;11:290. doi: 10.1186/1471-2164-11-290.

43.

Evolution of flower shape in Plantago lanceolata.

Reardon W, Fitzpatrick DA, Fares MA, Nugent JM.

Plant Mol Biol. 2009 Oct;71(3):241-50. doi: 10.1007/s11103-009-9520-z. Epub 2009 Jul 11.

PMID:
19593661
44.

Gene and genome trees conflict at many levels.

Haggerty LS, Martin FJ, Fitzpatrick DA, McInerney JO.

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12;364(1527):2209-19. doi: 10.1098/rstb.2009.0042.

45.

Evolution of pathogenicity and sexual reproduction in eight Candida genomes.

Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA.

Nature. 2009 Jun 4;459(7247):657-62. doi: 10.1038/nature08064.

46.

Recurrent malignant pilomatrixoma invading the cranial cavity: Improved local control with adjuvant radiation.

Aherne NJ, Fitzpatrick DA, Gibbons D, Collins CD, Armstrong JG.

J Med Imaging Radiat Oncol. 2009 Feb;53(1):139-41. doi: 10.1111/j.1754-9485.2009.02049.x.

PMID:
19453540
47.

Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species.

Fitzpatrick DA.

J Mol Evol. 2009 Feb;68(2):171-85. doi: 10.1007/s00239-009-9198-5. Epub 2009 Feb 3.

PMID:
19189039
48.

Novel primers for the amplification of nuclear DNA introns in the entomopathogenic nematode Heterorhabditis bacteriophora and their cross-amplification in seven other Heterorhabditis species.

Regeai SO, Dolan KM, Fitzpatrick DA, Browne JA, Jones JT, Burnell AM.

Mol Ecol Resour. 2009 Jan;9(1):421-4. doi: 10.1111/j.1755-0998.2008.02431.x.

PMID:
21564668
49.

Pilomatrix carcinoma presenting as an extra axial mass: clinicopathological features.

Aherne NJ, Fitzpatrick DA, Gibbons D, Armstrong JG.

Diagn Pathol. 2008 Nov 29;3:47. doi: 10.1186/1746-1596-3-47.

50.

Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis.

Fitzpatrick DA, Logue ME, Butler G.

BMC Evol Biol. 2008 Jun 24;8:181. doi: 10.1186/1471-2148-8-181.

Supplemental Content

Loading ...
Support Center