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MutL sliding clamps coordinate exonuclease-independent Escherichia coli mismatch repair.

Liu J, Lee R, Britton BM, London JA, Yang K, Hanne J, Lee JB, Fishel R.

Nat Commun. 2019 Nov 22;10(1):5294. doi: 10.1038/s41467-019-13191-5.


Nucleosome DNA unwrapping does not affect prototype foamy virus integration efficiency or site selection.

Mackler RM, Jones ND, Gardner AM, Lopez MA Jr, Howard CJ, Fishel R, Yoder KE.

PLoS One. 2019 Mar 13;14(3):e0212764. doi: 10.1371/journal.pone.0212764. eCollection 2019.


Plasticity of Multi-Protein Complexes.

van Oijen AM, Duderstadt KE, Xiao J, Fishel R.

J Mol Biol. 2018 Oct 26;430(22):4441-4442. doi: 10.1016/j.jmb.2018.08.008. Epub 2018 Aug 10. No abstract available.


MutS homolog sliding clamps shield the DNA from binding proteins.

Hanne J, Britton BM, Park J, Liu J, Martín-López J, Jones N, Schoffner M, Klajner P, Bundschuh R, Lee JB, Fishel R.

J Biol Chem. 2018 Sep 14;293(37):14285-14294. doi: 10.1074/jbc.RA118.002264. Epub 2018 Aug 2.


Expression and purification of nuclease-free protocatechuate 3,4-dioxygenase for prolonged single-molecule fluorescence imaging.

Senavirathne G, Lopez MA Jr, Messer R, Fishel R, Yoder KE.

Anal Biochem. 2018 Sep 1;556:78-84. doi: 10.1016/j.ab.2018.06.016. Epub 2018 Jun 19.


Stochastic Processes and Component Plasticity Governing DNA Mismatch Repair.

Liu J, Lee JB, Fishel R.

J Mol Biol. 2018 Oct 26;430(22):4456-4468. doi: 10.1016/j.jmb.2018.05.039. Epub 2018 Jun 1. Review.


Coordinating Multi-Protein Mismatch Repair by Managing Diffusion Mechanics on the DNA.

Kim D, Fishel R, Lee JB.

J Mol Biol. 2018 Oct 26;430(22):4469-4480. doi: 10.1016/j.jmb.2018.05.032. Epub 2018 May 21. Review.


Long repeating (TTAGGG) n single-stranded DNA self-condenses into compact beaded filaments stabilized by G-quadruplex formation.

Kar A, Jones N, Arat NÖ, Fishel R, Griffith JD.

J Biol Chem. 2018 Jun 15;293(24):9473-9485. doi: 10.1074/jbc.RA118.002158. Epub 2018 Apr 19.


Mutation of TGFβ-RII eliminates NSAID cancer chemoprevention.

Martín-López J, Gasparini P, Coombes K, Croce CM, Boivin GP, Fishel R.

Oncotarget. 2017 Dec 31;9(16):12554-12561. doi: 10.18632/oncotarget.23792. eCollection 2018 Feb 27.


Safety and efficiency of porous-tip contact-force catheter for drug-refractory symptomatic paroxysmal atrial fibrillation ablation: results from the SMART SF trial.

Chinitz LA, Melby DP, Marchlinski FE, Delaughter C, Fishel RS, Monir G, Patel AM, Gibson DN, Athill CA, Ming Boo L, Stagg R, Natale A.

Europace. 2018 Nov 1;20(FI_3):f392-f400. doi: 10.1093/europace/eux264. Erratum in: Europace. 2018 Nov 1;20(FI_3):f400.



Benkler M, Shulman O, Avrahamy Y, Mendes D, Arus Y, Fishel R, Leviav A, Egozi D.

Harefuah. 2017 Feb;156(2):74-78. Review. Hebrew.


Healthcare Utilization and Quality of Life Improvement after Ablation for Paroxysmal AF in Younger and Older Patients.

Biviano AB, Hunter TD, Dandamudi G, Fishel RS, Gidney B, Herweg B, Oza SR, Patel AM, Wang H, Pollak SJ.

Pacing Clin Electrophysiol. 2017 Apr;40(4):391-400. doi: 10.1111/pace.13041. Epub 2017 Mar 3.


Cascading MutS and MutL sliding clamps control DNA diffusion to activate mismatch repair.

Liu J, Hanne J, Britton BM, Bennett J, Kim D, Lee JB, Fishel R.

Nature. 2016 Nov 24;539(7630):583-587. doi: 10.1038/nature20562. Epub 2016 Nov 16.


Dynamic unwrapping of nucleosomes by HsRAD51 that includes sliding and rotational motion of histone octamers.

Senavirathne G, Mahto SK, Hanne J, O'Brian D, Fishel R.

Nucleic Acids Res. 2017 Jan 25;45(2):685-698. doi: 10.1093/nar/gkw920. Epub 2016 Oct 13.


Pseudomonas aeruginosa AmrZ Binds to Four Sites in the algD Promoter, Inducing DNA-AmrZ Complex Formation and Transcriptional Activation.

Xu B, Soukup RJ, Jones CJ, Fishel R, Wozniak DJ.

J Bacteriol. 2016 Sep 9;198(19):2673-81. doi: 10.1128/JB.00259-16. Print 2016 Oct 1.


Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integration.

Jones ND, Lopez MA Jr, Hanne J, Peake MB, Lee JB, Fishel R, Yoder KE.

Nat Commun. 2016 Apr 25;7:11409. doi: 10.1038/ncomms11409.


Enhanced gene targeting to evaluate Lynch syndrome alterations.

Fishel R, Heinen CD.

Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):3918-20. doi: 10.1073/pnas.1602650113. Epub 2016 Mar 24. No abstract available.


Dynamic control of strand excision during human DNA mismatch repair.

Jeon Y, Kim D, Martín-López JV, Lee R, Oh J, Hanne J, Fishel R, Lee JB.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3281-6. doi: 10.1073/pnas.1523748113. Epub 2016 Mar 7.


An Efficient Site-Specific Method for Irreversible Covalent Labeling of Proteins with a Fluorophore.

Liu J, Hanne J, Britton BM, Shoffner M, Albers AE, Bennett J, Zatezalo R, Barfield R, Rabuka D, Lee JB, Fishel R.

Sci Rep. 2015 Nov 19;5:16883. doi: 10.1038/srep16883.


The Pseudomonas aeruginosa AmrZ C-terminal domain mediates tetramerization and is required for its activator and repressor functions.

Xu B, Ju Y, Soukup RJ, Ramsey DM, Fishel R, Wysocki VH, Wozniak DJ.

Environ Microbiol Rep. 2016 Feb;8(1):85-90. doi: 10.1111/1758-2229.12354. Epub 2015 Dec 21.


Do Wound Cultures Give Information About the Microbiology of Blood Cultures in Severe Burn Patients?

Raz-Pasteur A, Fishel R, Hardak E, Mashiach T, Ullmann Y, Egozi D.

Ann Plast Surg. 2016 Jan;76(1):34-9. doi: 10.1097/SAP.0000000000000622.


Widespread nuclease contamination in commonly used oxygen-scavenging systems.

Senavirathne G, Liu J, Lopez MA Jr, Hanne J, Martin-Lopez J, Lee JB, Yoder KE, Fishel R.

Nat Methods. 2015 Oct;12(10):901-2. doi: 10.1038/nmeth.3588. No abstract available.


Mismatch repair.

Fishel R.

J Biol Chem. 2015 Oct 30;290(44):26395-403. doi: 10.1074/jbc.R115.660142. Epub 2015 Sep 9. Review.


Mismatch repair during homologous and homeologous recombination.

Spies M, Fishel R.

Cold Spring Harb Perspect Biol. 2015 Mar 2;7(3):a022657. doi: 10.1101/cshperspect.a022657. Review.


Repair of oxidative DNA base damage in the host genome influences the HIV integration site sequence preference.

Bennett GR, Peters R, Wang XH, Hanne J, Sobol RW, Bundschuh R, Fishel R, Yoder KE.

PLoS One. 2014 Jul 22;9(7):e103164. doi: 10.1371/journal.pone.0103164. eCollection 2014.


Single-molecule views of MutS on mismatched DNA.

Lee JB, Cho WK, Park J, Jeon Y, Kim D, Lee SH, Fishel R.

DNA Repair (Amst). 2014 Aug;20:82-93. doi: 10.1016/j.dnarep.2014.02.014. Epub 2014 Mar 12. Review.


Acute safety of an open-irrigated ablation catheter with 56-hole porous tip for radiofrequency ablation of paroxysmal atrial fibrillation: analysis from 2 observational registry studies.

Oza SR, Hunter TD, Biviano AB, Dandamudi G, Herweg B, Patel AM, Pollak SJ, Wang H, Fishel RS.

J Cardiovasc Electrophysiol. 2014 Aug;25(8):852-858. doi: 10.1111/jce.12403. Epub 2014 Apr 9.


Mismatch repair protein hMSH2-hMSH6 recognizes mismatches and forms sliding clamps within a D-loop recombination intermediate.

Honda M, Okuno Y, Hengel SR, Martín-López JV, Cook CP, Amunugama R, Soukup RJ, Subramanyam S, Fishel R, Spies M.

Proc Natl Acad Sci U S A. 2014 Jan 21;111(3):E316-25. doi: 10.1073/pnas.1312988111. Epub 2014 Jan 6.


The HsRAD51B-HsRAD51C stabilizes the HsRAD51 nucleoprotein filament.

Amunugama R, Groden J, Fishel R.

DNA Repair (Amst). 2013 Sep;12(9):723-32. doi: 10.1016/j.dnarep.2013.05.005. Epub 2013 Jun 28.


ATP-dependent nucleosome unwrapping catalyzed by human RAD51.

North JA, Amunugama R, Klajner M, Bruns AN, Poirier MG, Fishel R.

Nucleic Acids Res. 2013 Aug;41(15):7302-12. doi: 10.1093/nar/gkt411. Epub 2013 Jun 11.


The mechanism of mismatch repair and the functional analysis of mismatch repair defects in Lynch syndrome.

Martín-López JV, Fishel R.

Fam Cancer. 2013 Jun;12(2):159-68. doi: 10.1007/s10689-013-9635-x. Review.


Regulation of the nucleosome unwrapping rate controls DNA accessibility.

North JA, Shimko JC, Javaid S, Mooney AM, Shoffner MA, Rose SD, Bundschuh R, Fishel R, Ottesen JJ, Poirier MG.

Nucleic Acids Res. 2012 Nov 1;40(20):10215-27. doi: 10.1093/nar/gks747. Epub 2012 Sep 10.


Homologous recombination in eukaryotes.

Amunugama R, Fishel R.

Prog Mol Biol Transl Sci. 2012;110:155-206. doi: 10.1016/B978-0-12-387665-2.00007-9. Review.


The hMSH2(M688R) Lynch syndrome mutation may function as a dominant negative.

Martín-López JV, Barrios Y, Medina-Arana V, Andújar M, Lee S, Gu L, Li GM, Rüschoff J, Salido E, Fishel R.

Carcinogenesis. 2012 Sep;33(9):1647-54. doi: 10.1093/carcin/bgs199. Epub 2012 Jun 27.


ATP alters the diffusion mechanics of MutS on mismatched DNA.

Cho WK, Jeong C, Kim D, Chang M, Song KM, Hanne J, Ban C, Fishel R, Lee JB.

Structure. 2012 Jul 3;20(7):1264-1274. doi: 10.1016/j.str.2012.04.017. Epub 2012 Jun 7.


RAD51 protein ATP cap regulates nucleoprotein filament stability.

Amunugama R, He Y, Willcox S, Forties RA, Shim KS, Bundschuh R, Luo Y, Griffith J, Fishel R.

J Biol Chem. 2012 Mar 16;287(12):8724-36. doi: 10.1074/jbc.M111.239426. Epub 2012 Jan 24.


Human MSH2 (hMSH2) protein controls ATP processing by hMSH2-hMSH6.

Heinen CD, Cyr JL, Cook C, Punja N, Sakato M, Forties RA, Lopez JM, Hingorani MM, Fishel R.

J Biol Chem. 2011 Nov 18;286(46):40287-95. doi: 10.1074/jbc.M111.297523. Epub 2011 Sep 19.


Subunit interface residues F129 and H294 of human RAD51 are essential for recombinase function.

Amunugama R, Fishel R.

PLoS One. 2011;6(8):e23071. doi: 10.1371/journal.pone.0023071. Epub 2011 Aug 12.


Histone fold modifications control nucleosome unwrapping and disassembly.

Simon M, North JA, Shimko JC, Forties RA, Ferdinand MB, Manohar M, Zhang M, Fishel R, Ottesen JJ, Poirier MG.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12711-6. doi: 10.1073/pnas.1106264108. Epub 2011 Jul 18.


A quantitative model of nucleosome dynamics.

Forties RA, North JA, Javaid S, Tabbaa OP, Fishel R, Poirier MG, Bundschuh R.

Nucleic Acids Res. 2011 Oct;39(19):8306-13. doi: 10.1093/nar/gkr422. Epub 2011 Jul 14.


Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling.

North JA, Javaid S, Ferdinand MB, Chatterjee N, Picking JW, Shoffner M, Nakkula RJ, Bartholomew B, Ottesen JJ, Fishel R, Poirier MG.

Nucleic Acids Res. 2011 Aug;39(15):6465-74. doi: 10.1093/nar/gkr304. Epub 2011 May 16.


Intrathoracic impedance vs daily weight monitoring for predicting worsening heart failure events: results of the Fluid Accumulation Status Trial (FAST).

Abraham WT, Compton S, Haas G, Foreman B, Canby RC, Fishel R, McRae S, Toledo GB, Sarkar S, Hettrick DA; FAST Study Investigators.

Congest Heart Fail. 2011 Mar-Apr;17(2):51-5. doi: 10.1111/j.1751-7133.2011.00220.x. Epub 2011 Mar 21.


The base excision repair pathway is required for efficient lentivirus integration.

Yoder KE, Espeseth A, Wang XH, Fang Q, Russo MT, Lloyd RS, Hazuda D, Sobol RW, Fishel R.

PLoS One. 2011 Mar 23;6(3):e17862. doi: 10.1371/journal.pone.0017862.


siRNA screening of a targeted library of DNA repair factors in HIV infection reveals a role for base excision repair in HIV integration.

Espeseth AS, Fishel R, Hazuda D, Huang Q, Xu M, Yoder K, Zhou H.

PLoS One. 2011 Mar 23;6(3):e17612. doi: 10.1371/journal.pone.0017612.


Aspirin and low-dose nitric oxide-donating aspirin increase life span in a Lynch syndrome mouse model.

McIlhatton MA, Tyler J, Kerepesi LA, Bocker-Edmonston T, Kucherlapati MH, Edelmann W, Kucherlapati R, Kopelovich L, Fishel R.

Cancer Prev Res (Phila). 2011 May;4(5):684-93. doi: 10.1158/1940-6207.CAPR-10-0319. Epub 2011 Mar 24.


hMSH2 recruits ATR to DNA damage sites for activation during DNA damage-induced apoptosis.

Pabla N, Ma Z, McIlhatton MA, Fishel R, Dong Z.

J Biol Chem. 2011 Mar 25;286(12):10411-8. doi: 10.1074/jbc.M110.210989. Epub 2011 Feb 1.


MutS switches between two fundamentally distinct clamps during mismatch repair.

Jeong C, Cho WK, Song KM, Cook C, Yoon TY, Ban C, Fishel R, Lee JB.

Nat Struct Mol Biol. 2011 Mar;18(3):379-85. doi: 10.1038/nsmb.2009. Epub 2011 Jan 30.


XPB mediated retroviral cDNA degradation coincides with entry to the nucleus.

Yoder KE, Roddick W, Hoellerbauer P, Fishel R.

Virology. 2011 Feb 20;410(2):291-8. doi: 10.1016/j.virol.2010.11.016. Epub 2010 Dec 17.


Single-molecule analysis reveals the kinetics and physiological relevance of MutL-ssDNA binding.

Park J, Jeon Y, In D, Fishel R, Ban C, Lee JB.

PLoS One. 2010 Nov 12;5(11):e15496. doi: 10.1371/journal.pone.0015496.

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