Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 65

1.

Microbial functional diversity: From concepts to applications.

Escalas A, Hale L, Voordeckers JW, Yang Y, Firestone MK, Alvarez-Cohen L, Zhou J.

Ecol Evol. 2019 Oct 2;9(20):12000-12016. doi: 10.1002/ece3.5670. eCollection 2019 Oct. Review.

2.

Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon.

Starr EP, Shi S, Blazewicz SJ, Probst AJ, Herman DJ, Firestone MK, Banfield JF.

Microbiome. 2018 Jul 3;6(1):122. doi: 10.1186/s40168-018-0499-z.

3.

Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions.

Gao J, Sasse J, Lewald KM, Zhalnina K, Cornmesser LT, Duncombe TA, Yoshikuni Y, Vogel JP, Firestone MK, Northen TR.

J Vis Exp. 2018 Apr 10;(134). doi: 10.3791/57170.

4.

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.

Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL.

Nat Microbiol. 2018 Apr;3(4):470-480. doi: 10.1038/s41564-018-0129-3. Epub 2018 Mar 19.

PMID:
29556109
5.

Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass.

Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie EL, Firestone MK.

Ecology. 2016 May;97(5):1307-18.

6.

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages.

Shi S, Nuccio EE, Shi ZJ, He Z, Zhou J, Firestone MK.

Ecol Lett. 2016 Aug;19(8):926-36. doi: 10.1111/ele.12630. Epub 2016 Jun 6.

PMID:
27264635
7.

Changing precipitation pattern alters soil microbial community response to wet-up under a Mediterranean-type climate.

Barnard RL, Osborne CA, Firestone MK.

ISME J. 2015 Mar 17;9(4):946-57. doi: 10.1038/ismej.2014.192.

8.

Growth and death of bacteria and fungi underlie rainfall-induced carbon dioxide pulses from seasonally dried soil.

Blazewicz SJ, Schwartz E, Firestone MK.

Ecology. 2014 May;95(5):1162-72.

PMID:
25000748
9.

Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains.

Doll HM, Armitage DW, Daly RA, Emerson JB, Goltsman DS, Yelton AP, Kerekes J, Firestone MK, Potts MD.

BMC Microbiol. 2013 Nov 15;13:259. doi: 10.1186/1471-2180-13-259.

10.

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses.

Blazewicz SJ, Barnard RL, Daly RA, Firestone MK.

ISME J. 2013 Nov;7(11):2061-8. doi: 10.1038/ismej.2013.102. Epub 2013 Jul 4.

11.

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting.

Barnard RL, Osborne CA, Firestone MK.

ISME J. 2013 Nov;7(11):2229-41. doi: 10.1038/ismej.2013.104. Epub 2013 Jul 4.

12.

Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil.

Pett-Ridge J, Petersen DG, Nuccio E, Firestone MK.

FEMS Microbiol Ecol. 2013 Jul;85(1):179-94. doi: 10.1111/1574-6941.12111. Epub 2013 Apr 4.

13.

Transcriptional response of nitrifying communities to wetting of dry soil.

Placella SA, Firestone MK.

Appl Environ Microbiol. 2013 May;79(10):3294-302. doi: 10.1128/AEM.00404-13. Epub 2013 Mar 22.

14.

An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition.

Nuccio EE, Hodge A, Pett-Ridge J, Herman DJ, Weber PK, Firestone MK.

Environ Microbiol. 2013 Jun;15(6):1870-81. doi: 10.1111/1462-2920.12081. Epub 2013 Jan 30.

PMID:
23360621
15.

The source of microbial C has little impact on soil organic matter stabilisation in forest ecosystems.

Throckmorton HM, Bird JA, Dane L, Firestone MK, Horwath WR.

Ecol Lett. 2012 Nov;15(11):1257-1265. doi: 10.1111/j.1461-0248.2012.01848.x. Epub 2012 Aug 16.

PMID:
22897121
16.

Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups.

Placella SA, Brodie EL, Firestone MK.

Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10931-6. doi: 10.1073/pnas.1204306109. Epub 2012 Jun 19.

17.

Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.

DeAngelis KM, Firestone MK.

Appl Environ Microbiol. 2012 Apr;78(7):2459-61. doi: 10.1128/AEM.07547-11. Epub 2012 Jan 27.

18.

Interactions between an arbuscular mycorrhizal fungus and a soil microbial community mediating litter decomposition.

Herman DJ, Firestone MK, Nuccio E, Hodge A.

FEMS Microbiol Ecol. 2012 Apr;80(1):236-47. doi: 10.1111/j.1574-6941.2011.01292.x. Epub 2012 Jan 17.

19.

Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater.

Brodie EL, Joyner DC, Faybishenko B, Conrad ME, Rios-Velazquez C, Malave J, Martinez R, Mork B, Willett A, Koenigsberg S, Herman DJ, Firestone MK, Hazen TC.

Chemosphere. 2011 Oct;85(4):660-5. doi: 10.1016/j.chemosphere.2011.07.021. Epub 2011 Aug 27.

PMID:
21872904
20.
21.

Effects of selected root exudate components on soil bacterial communities.

Shi S, Richardson AE, O'Callaghan M, DeAngelis KM, Jones EE, Stewart A, Firestone MK, Condron LM.

FEMS Microbiol Ecol. 2011 Sep;77(3):600-10. doi: 10.1111/j.1574-6941.2011.01150.x. Epub 2011 Jul 13.

22.

Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests.

Cusack DF, Silver WL, Torn MS, Burton SD, Firestone MK.

Ecology. 2011 Mar;92(3):621-32.

PMID:
21608471
23.

Tropical forest soil microbial communities couple iron and carbon biogeochemistry.

Dubinsky EA, Silver WL, Firestone MK.

Ecology. 2010 Sep;91(9):2604-12.

PMID:
20957955
24.

Microbial communities acclimate to recurring changes in soil redox potential status.

DeAngelis KM, Silver WL, Thompson AW, Firestone MK.

Environ Microbiol. 2010 Dec;12(12):3137-49. doi: 10.1111/j.1462-2920.2010.02286.x.

PMID:
20629704
25.

Avian incubation inhibits growth and diversification of bacterial assemblages on eggs.

Shawkey MD, Firestone MK, Brodie EL, Beissinger SR.

PLoS One. 2009;4(2):e4522. doi: 10.1371/journal.pone.0004522. Epub 2009 Feb 19.

26.

Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment.

Tokunaga TK, Wan J, Kim Y, Daly RA, Brodie EL, Hazen TC, Herman D, Firestone MK.

Environ Sci Technol. 2008 Dec 1;42(23):8901-7.

PMID:
19192816
27.

Selective progressive response of soil microbial community to wild oat roots.

DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.

ISME J. 2009 Feb;3(2):168-78. doi: 10.1038/ismej.2008.103. Epub 2008 Nov 13.

PMID:
19005498
28.

Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment.

Wan J, Tokunaga TK, Kim Y, Brodie E, Daly R, Hazen TC, Firestone MK.

Environ Sci Technol. 2008 Oct 15;42(20):7573-9.

PMID:
18983077
29.

Bacterial quorum sensing and nitrogen cycling in rhizosphere soil.

DeAngelis KM, Lindow SE, Firestone MK.

FEMS Microbiol Ecol. 2008 Nov;66(2):197-207. doi: 10.1111/j.1574-6941.2008.00550.x. Epub 2008 Aug 20.

30.

Toluene diffusion and reaction in unsaturated Pseudomonas putida biofilms.

Holden PA, Hunt JR, Firestone MK.

Biotechnol Bioeng. 1997 Dec 20;56(6):656-70. doi: 10.1002/(SICI)1097-0290(19971220)56:6<656::AID-BIT9>3.0.CO;2-M.

31.

The role of ecological theory in microbial ecology.

Prosser JI, Bohannan BJ, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP, Green JL, Green LE, Killham K, Lennon JJ, Osborn AM, Solan M, van der Gast CJ, Young JP.

Nat Rev Microbiol. 2007 May;5(5):384-92. Review.

PMID:
17435792
32.

Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities.

DeAngelis KM, Firestone MK, Lindow SE.

Appl Environ Microbiol. 2007 Jun;73(11):3724-7. Epub 2007 Mar 30.

33.

Methods for measuring denitrification: diverse approaches to a difficult problem.

Groffman PM, Altabet MA, Böhlke JK, Butterbach-Bahl K, David MB, Firestone MK, Giblin AE, Kana TM, Nielsen LP, Voytek MA.

Ecol Appl. 2006 Dec;16(6):2091-122. Review.

PMID:
17205891
34.

Response of microbial community composition and function to soil climate change.

Waldrop MP, Firestone MK.

Microb Ecol. 2006 Nov;52(4):716-24. Epub 2006 Oct 24.

PMID:
17061172
35.

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation.

Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, Firestone MK.

Appl Environ Microbiol. 2006 Sep;72(9):6288-98.

36.

Seasonal dynamics of microbial community composition and function in oak canopy and open grassland soils.

Waldrop MP, Firestone MK.

Microb Ecol. 2006 Oct;52(3):470-9. Epub 2006 Aug 15.

PMID:
16909344
37.

Two novel bacterial biosensors for detection of nitrate availability in the rhizosphere.

DeAngelis KM, Ji P, Firestone MK, Lindow SE.

Appl Environ Microbiol. 2005 Dec;71(12):8537-47.

38.

Redox fluctuation structures microbial communities in a wet tropical soil.

Pett-Ridge J, Firestone MK.

Appl Environ Microbiol. 2005 Nov;71(11):6998-7007.

39.

Uranium reduction in sediments under diffusion-limited transport of organic carbon.

Tokunaga TK, Wan J, Pena J, Brodie EL, Firestone MK, Hazen TC, Sutton SR, Lanzirotti A, Newville M.

Environ Sci Technol. 2005 Sep 15;39(18):7077-83.

PMID:
16201631
40.

Reoxidation of bioreduced uranium under reducing conditions.

Wan J, Tokunaga TK, Brodie E, Wang Z, Zheng Z, Herman D, Hazen TC, Firestone MK, Sutton SR.

Environ Sci Technol. 2005 Aug 15;39(16):6162-9.

PMID:
16173577
41.
42.

In situ reduction of chromium(VI) in heavily contaminated soils through organic carbon amendment.

Tokunaga TK, Wan J, Firestone MK, Hazen TC, Olson KR, Herman DJ, Sutton SR, Lanzirotti A.

J Environ Qual. 2003 Sep-Oct;32(5):1641-9.

43.

Distribution of chromium contamination and microbial activity in soil aggregates.

Tokunaga TK, Wan J, Hazen TC, Schwartz E, Firestone MK, Sutton SR, Newville M, Olson KR, Lanzirotti A, Rao W.

J Environ Qual. 2003 Mar-Apr;32(2):541-9.

PMID:
12708678
44.

Water Content Mediated Microaerophilic Toluene Biodegradation in Arid Vadose Zone Materials.

Holden PA, Hersman LE, Firestone MK.

Microb Ecol. 2001 Oct;42(3):256-266.

PMID:
12024251
45.

Enhanced phenanthrene biodegradation in soil by slender oat root exudates and root debris.

Miya RK, Firestone MK.

J Environ Qual. 2001 Nov-Dec;30(6):1911-8.

PMID:
11789996
46.

Chromium diffusion and reduction in soil aggregates.

Tokunaga TK, Wan J, Firestone MK, Hazen TC, Schwartz E, Sutton SR, Newville M.

Environ Sci Technol. 2001 Aug 1;35(15):3169-74.

PMID:
11505996
47.

Nitrogen limitation of microbial decomposition in a grassland under elevated CO2.

Hu S, Chapin FS 3rd, Firestone MK, Field CB, Chiariello NR.

Nature. 2001 Jan 11;409(6817):188-91.

PMID:
11196641
48.
49.

Soil microbial feedbacks to atmospheric CO2 enrichment.

Hu S, Firestone MK, Chapin FS 3rd.

Trends Ecol Evol. 1999 Nov;14(11):433-437.

PMID:
10511719
50.

Mapping of sugar and amino acid availability in soil around roots with bacterial sensors of sucrose and tryptophan

Jaeger CH 3rd, Lindow SE, Miller W, Clark E, Firestone MK.

Appl Environ Microbiol. 1999 Jun;65(6):2685-90.

Supplemental Content

Loading ...
Support Center