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Items: 15


Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria.

Olm MR, Bhattacharya N, Crits-Christoph A, Firek BA, Baker R, Song YS, Morowitz MJ, Banfield JF.

Sci Adv. 2019 Dec 11;5(12):eaax5727. doi: 10.1126/sciadv.aax5727. eCollection 2019 Dec.


Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants.

Gopalakrishna KP, Macadangdang BR, Rogers MB, Tometich JT, Firek BA, Baker R, Ji J, Burr AHP, Ma C, Good M, Morowitz MJ, Hand TW.

Nat Med. 2019 Jul;25(7):1110-1115. doi: 10.1038/s41591-019-0480-9. Epub 2019 Jun 17.


Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.

Olm MR, West PT, Brooks B, Firek BA, Baker R, Morowitz MJ, Banfield JF.

Microbiome. 2019 Feb 15;7(1):26. doi: 10.1186/s40168-019-0638-1.


The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.

Brooks B, Olm MR, Firek BA, Baker R, Geller-McGrath D, Reimer SR, Soenjoyo KR, Yip JS, Dahan D, Thomas BC, Morowitz MJ, Banfield JF.

Microbiome. 2018 Jun 20;6(1):112. doi: 10.1186/s40168-018-0493-5.


Safety, Clinical Response, and Microbiome Findings Following Fecal Microbiota Transplant in Children With Inflammatory Bowel Disease.

Goyal A, Yeh A, Bush BR, Firek BA, Siebold LM, Rogers MB, Kufen AD, Morowitz MJ.

Inflamm Bowel Dis. 2018 Jan 18;24(2):410-421. doi: 10.1093/ibd/izx035.


Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.

Brooks B, Olm MR, Firek BA, Baker R, Thomas BC, Morowitz MJ, Banfield JF.

Nat Commun. 2017 Nov 27;8(1):1814. doi: 10.1038/s41467-017-02018-w.


Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.

Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF.

Microbiome. 2014 Jan 28;2(1):1. doi: 10.1186/2049-2618-2-1.


Structure and energetics of encapsidated DNA in bacteriophage HK97 studied by scanning calorimetry and cryo-electron microscopy.

Duda RL, Ross PD, Cheng N, Firek BA, Hendrix RW, Conway JF, Steven AC.

J Mol Biol. 2009 Aug 14;391(2):471-83. doi: 10.1016/j.jmb.2009.06.035. Epub 2009 Jun 18.


Mutational analysis of a conserved glutamic acid required for self-catalyzed cross-linking of bacteriophage HK97 capsids.

Dierkes LE, Peebles CL, Firek BA, Hendrix RW, Duda RL.

J Virol. 2009 Mar;83(5):2088-98. doi: 10.1128/JVI.02000-08. Epub 2008 Dec 17.


Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM.

Gan L, Speir JA, Conway JF, Lander G, Cheng N, Firek BA, Hendrix RW, Duda RL, Liljas L, Johnson JE.

Structure. 2006 Nov;14(11):1655-65.


A free energy cascade with locks drives assembly and maturation of bacteriophage HK97 capsid.

Ross PD, Conway JF, Cheng N, Dierkes L, Firek BA, Hendrix RW, Steven AC, Duda RL.

J Mol Biol. 2006 Dec 1;364(3):512-25. Epub 2006 Aug 22.


Crosslinking renders bacteriophage HK97 capsid maturation irreversible and effects an essential stabilization.

Ross PD, Cheng N, Conway JF, Firek BA, Hendrix RW, Duda RL, Steven AC.

EMBO J. 2005 Apr 6;24(7):1352-63. Epub 2005 Mar 17.


Control of crosslinking by quaternary structure changes during bacteriophage HK97 maturation.

Gan L, Conway JF, Firek BA, Cheng N, Hendrix RW, Steven AC, Johnson JE, Duda RL.

Mol Cell. 2004 Jun 4;14(5):559-69.


The Staphylococcus aureus cidAB operon: evaluation of its role in regulation of murein hydrolase activity and penicillin tolerance.

Rice KC, Firek BA, Nelson JB, Yang SJ, Patton TG, Bayles KW.

J Bacteriol. 2003 Apr;185(8):2635-43.


The Staphylococcus aureus lrgAB operon modulates murein hydrolase activity and penicillin tolerance.

Groicher KH, Firek BA, Fujimoto DF, Bayles KW.

J Bacteriol. 2000 Apr;182(7):1794-801.

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