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Items: 1 to 50 of 59

1.

The impact of autotrophic versus heterotrophic nutritional pathways on colony health and wound recovery in corals.

Burmester EM, Breef-Pilz A, Lawrence NF, Kaufman L, Finnerty JR, Rotjan RD.

Ecol Evol. 2018 Oct 18;8(22):10805-10816. doi: 10.1002/ece3.4531. eCollection 2018 Nov.

2.

Intraspecific variation in oxidative stress tolerance in a model cnidarian: Differences in peroxide sensitivity between and within populations of Nematostella vectensis.

Friedman LE, Gilmore TD, Finnerty JR.

PLoS One. 2018 Jan 26;13(1):e0188265. doi: 10.1371/journal.pone.0188265. eCollection 2018.

3.

Transcription factor NF-κB is modulated by symbiotic status in a sea anemone model of cnidarian bleaching.

Mansfield KM, Carter NM, Nguyen L, Cleves PA, Alshanbayeva A, Williams LM, Crowder C, Penvose AR, Finnerty JR, Weis VM, Siggers TW, Gilmore TD.

Sci Rep. 2017 Nov 22;7(1):16025. doi: 10.1038/s41598-017-16168-w.

4.

Sex-specific and developmental expression of Dmrt genes in the starlet sea anemone, Nematostella vectensis.

Traylor-Knowles NG, Kane EG, Sombatsaphay V, Finnerty JR, Reitzel AM.

Evodevo. 2015 Apr 25;6:13. doi: 10.1186/s13227-015-0013-7. eCollection 2015.

5.

Methods for analyzing the evolutionary relationship of NF-κB proteins using free, web-driven bioinformatics and phylogenetic tools.

Finnerty JR, Gilmore TD.

Methods Mol Biol. 2015;1280:631-46. doi: 10.1007/978-1-4939-2422-6_37.

PMID:
25736776
6.

Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian.

Stefanik DJ, Lubinski TJ, Granger BR, Byrd AL, Reitzel AM, DeFilippo L, Lorenc A, Finnerty JR.

BMC Genomics. 2014 Jan 28;15:71. doi: 10.1186/1471-2164-15-71.

7.

Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis.

Stefanik DJ, Friedman LE, Finnerty JR.

Nat Protoc. 2013 May;8(5):916-23. doi: 10.1038/nprot.2013.044. Epub 2013 Apr 11.

PMID:
23579780
8.

Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis.

Wolenski FS, Layden MJ, Martindale MQ, Gilmore TD, Finnerty JR.

Nat Protoc. 2013 May;8(5):900-15. doi: 10.1038/nprot.2013.014. Epub 2013 Apr 11.

9.

Isolation of DNA, RNA and protein from the starlet sea anemone Nematostella vectensis.

Stefanik DJ, Wolenski FS, Friedman LE, Gilmore TD, Finnerty JR.

Nat Protoc. 2013 May;8(5):892-9. doi: 10.1038/nprot.2012.151. Epub 2013 Apr 11.

PMID:
23579778
10.

A report from the second Nematostella vectensis research conference.

Gilmore TD, Tarrant AM, Finnerty JR.

Dev Genes Evol. 2013 May;223(3):207-11. doi: 10.1007/s00427-012-0434-4. Epub 2013 Jan 12.

PMID:
23314922
11.

NF-κB is required for cnidocyte development in the sea anemone Nematostella vectensis.

Wolenski FS, Bradham CA, Finnerty JR, Gilmore TD.

Dev Biol. 2013 Jan 1;373(1):205-15. doi: 10.1016/j.ydbio.2012.10.004. Epub 2012 Oct 12.

12.

Two polymorphic residues account for the differences in DNA binding and transcriptional activation by NF-κB proteins encoded by naturally occurring alleles in Nematostella vectensis.

Wolenski FS, Chandani S, Stefanik DJ, Jiang N, Chu E, Finnerty JR, Gilmore TD.

J Mol Evol. 2011 Dec;73(5-6):325-36. doi: 10.1007/s00239-011-9479-7. Epub 2011 Dec 25.

PMID:
22198650
13.

Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis.

Traylor-Knowles N, Granger BR, Lubinski TJ, Parikh JR, Garamszegi S, Xia Y, Marto JA, Kaufman L, Finnerty JR.

BMC Genomics. 2011 Nov 29;12:585. doi: 10.1186/1471-2164-12-585.

14.

Evolutionary expression of glucose-dependent-insulinotropic polypeptide (GIP).

Musson MC, Jepeal LI, Finnerty JR, Wolfe MM.

Regul Pept. 2011 Nov 10;171(1-3):26-34. doi: 10.1016/j.regpep.2011.06.001. Epub 2011 Jul 1.

PMID:
21723886
15.

Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis.

Wolenski FS, Garbati MR, Lubinski TJ, Traylor-Knowles N, Dresselhaus E, Stefanik DJ, Goucher H, Finnerty JR, Gilmore TD.

Mol Cell Biol. 2011 Mar;31(5):1076-87. doi: 10.1128/MCB.00927-10. Epub 2010 Dec 28.

16.

A conserved cluster of three PRD-class homeobox genes (homeobrain, rx and orthopedia) in the Cnidaria and Protostomia.

Mazza ME, Pang K, Reitzel AM, Martindale MQ, Finnerty JR.

Evodevo. 2010 Jul 5;1(1):3. doi: 10.1186/2041-9139-1-3.

17.

Evolution of function of a fused metazoan tRNA synthetase.

Ray PS, Sullivan JC, Jia J, Francis J, Finnerty JR, Fox PL.

Mol Biol Evol. 2011 Jan;28(1):437-47. doi: 10.1093/molbev/msq246. Epub 2010 Sep 9.

18.

The miR-15/107 group of microRNA genes: evolutionary biology, cellular functions, and roles in human diseases.

Finnerty JR, Wang WX, Hébert SS, Wilfred BR, Mao G, Nelson PT.

J Mol Biol. 2010 Sep 24;402(3):491-509. doi: 10.1016/j.jmb.2010.07.051. Epub 2010 Aug 1. Review.

19.

The evolutionary diversification of LSF and Grainyhead transcription factors preceded the radiation of basal animal lineages.

Traylor-Knowles N, Hansen U, Dubuc TQ, Martindale MQ, Kaufman L, Finnerty JR.

BMC Evol Biol. 2010 Apr 18;10:101. doi: 10.1186/1471-2148-10-101.

20.

Two alleles of NF-kappaB in the sea anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities.

Sullivan JC, Wolenski FS, Reitzel AM, French CE, Traylor-Knowles N, Gilmore TD, Finnerty JR.

PLoS One. 2009 Oct 6;4(10):e7311. doi: 10.1371/journal.pone.0007311.

21.

Conserved and novel gene expression between regeneration and asexual fission in Nematostella vectensis.

Burton PM, Finnerty JR.

Dev Genes Evol. 2009 Feb;219(2):79-87. doi: 10.1007/s00427-009-0271-2. Epub 2009 Jan 30.

PMID:
19184098
22.

Domain duplication, divergence, and loss events in vertebrate Msx paralogs reveal phylogenomically informed disease markers.

Finnerty JR, Mazza ME, Jezewski PA.

BMC Evol Biol. 2009 Jan 20;9:18. doi: 10.1186/1471-2148-9-18.

23.

The evolutionary origin of the Runx/CBFbeta transcription factors--studies of the most basal metazoans.

Sullivan JC, Sher D, Eisenstein M, Shigesada K, Reitzel AM, Marlow H, Levanon D, Groner Y, Finnerty JR, Gat U.

BMC Evol Biol. 2008 Aug 5;8:228. doi: 10.1186/1471-2148-8-228.

24.

Comparative anatomy and histology of developmental and parasitic stages in the life cycle of the lined sea anemone Edwardsiella lineata.

Reitzel AM, Daly M, Sullivan JC, Finnerty JR.

J Parasitol. 2009 Feb;95(1):100-12. doi: 10.1645/GE-1623.1.

PMID:
18656992
25.

Genomic survey of candidate stress-response genes in the estuarine anemone Nematostella vectensis.

Reitzel AM, Sullivan JC, Traylor-Knowles N, Finnerty JR.

Biol Bull. 2008 Jun;214(3):233-54.

PMID:
18574101
26.

Intron retention as a posttranscriptional regulatory mechanism of neurotoxin expression at early life stages of the starlet anemone Nematostella vectensis.

Moran Y, Weinberger H, Reitzel AM, Sullivan JC, Kahn R, Gordon D, Finnerty JR, Gurevitz M.

J Mol Biol. 2008 Jul 11;380(3):437-43. doi: 10.1016/j.jmb.2008.05.011. Epub 2008 May 11.

PMID:
18538344
27.

Ecological and developmental dynamics of a host-parasite system involving a sea anemone and two ctenophores.

Reitzel AM, Sullivan JC, Brown BK, Chin DW, Cira EK, Edquist SK, Genco BM, Joseph OC, Kaufman CA, Kovitvongsa K, Muñoz MM, Negri TL, Taffel JR, Zuehlke RT, Finnerty JR.

J Parasitol. 2007 Dec;93(6):1392-402. doi: 10.1645/GE-1250.1.

PMID:
18314686
28.

Concerted evolution of sea anemone neurotoxin genes is revealed through analysis of the Nematostella vectensis genome.

Moran Y, Weinberger H, Sullivan JC, Reitzel AM, Finnerty JR, Gurevitz M.

Mol Biol Evol. 2008 Apr;25(4):737-47. doi: 10.1093/molbev/msn021. Epub 2008 Jan 24.

PMID:
18222944
29.

Upgrades to StellaBase facilitate medical and genetic studies on the starlet sea anemone, Nematostella vectensis.

Sullivan JC, Reitzel AM, Finnerty JR.

Nucleic Acids Res. 2008 Jan;36(Database issue):D607-11. Epub 2007 Nov 3.

30.
31.

Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.

Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS.

Science. 2007 Jul 6;317(5834):86-94.

32.
33.

Genomic organization, gene structure, and developmental expression of three clustered otx genes in the sea anemone Nematostella vectensis.

Mazza ME, Pang K, Martindale MQ, Finnerty JR.

J Exp Zool B Mol Dev Evol. 2007 Jul 15;308(4):494-506.

PMID:
17377951
34.

Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis.

Sullivan JC, Ryan JF, Mullikin JC, Finnerty JR.

Dev Genes Evol. 2007 Mar;217(3):235-9. Epub 2007 Feb 20.

PMID:
17310352
35.

Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis.

Ryan JF, Mazza ME, Pang K, Matus DQ, Baxevanis AD, Martindale MQ, Finnerty JR.

PLoS One. 2007 Jan 24;2(1):e153.

36.

Qualitative shift to indirect development in the parasitic sea anemone Edwardsiella lineata.

Reitzel AM, Sullivan JC, Finnerty JR.

Integr Comp Biol. 2006 Dec;46(6):827-37. doi: 10.1093/icb/icl032. Epub 2006 Aug 30.

PMID:
21672788
37.

Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis.

Sullivan JC, Kalaitzidis D, Gilmore TD, Finnerty JR.

Dev Genes Evol. 2007 Jan;217(1):63-72. Epub 2006 Nov 21.

PMID:
17120026
38.

The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis.

Ryan JF, Burton PM, Mazza ME, Kwong GK, Mullikin JC, Finnerty JR.

Genome Biol. 2006;7(7):R64.

39.

StellaBase: the Nematostella vectensis Genomics Database.

Sullivan JC, Ryan JF, Watson JA, Webb J, Mullikin JC, Rokhsar D, Finnerty JR.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D495-9.

40.
41.

Rising starlet: the starlet sea anemone, Nematostella vectensis.

Darling JA, Reitzel AR, Burton PM, Mazza ME, Ryan JF, Sullivan JC, Finnerty JR.

Bioessays. 2005 Feb;27(2):211-21. Review.

PMID:
15666346
42.

A Clue to the Origin of the Bilateria?

Rieger RM, Ladurner P, Hobmayer B, Martindale MQ, Finnerty JR.

Science. 2005 Jan 21;307(5708):353c-355c. No abstract available.

PMID:
15664903
43.
44.

Origins of bilateral symmetry: Hox and dpp expression in a sea anemone.

Finnerty JR, Pang K, Burton P, Paulson D, Martindale MQ.

Science. 2004 May 28;304(5675):1335-7. Epub 2004 May 6.

46.

The origins of axial patterning in the metazoa: how old is bilateral symmetry?

Finnerty JR.

Int J Dev Biol. 2003;47(7-8):523-9. Review.

47.

Early evolution of a homeobox gene: the parahox gene Gsx in the Cnidaria and the Bilateria.

Finnerty JR, Paulson D, Burton P, Pang K, Martindale MQ.

Evol Dev. 2003 Jul-Aug;5(4):331-45.

PMID:
12823450
48.

Protein evolution: structure-function relationships of the oncogene beta-catenin in the evolution of multicellular animals.

Schneider SQ, Finnerty JR, Martindale MQ.

J Exp Zool B Mol Dev Evol. 2003 Feb 15;295(1):25-44.

PMID:
12548541
49.

CnidBase: The Cnidarian Evolutionary Genomics Database.

Ryan JF, Finnerty JR.

Nucleic Acids Res. 2003 Jan 1;31(1):159-63.

50.

The Radiata and the evolutionary origins of the bilaterian body plan.

Martindale MQ, Finnerty JR, Henry JQ.

Mol Phylogenet Evol. 2002 Sep;24(3):358-65. Review.

PMID:
12220977

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