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Items: 1 to 50 of 70

1.

The Protein Interactome of Streptococcus pneumoniae and Bacterial Meta-interactomes Improve Function Predictions.

Wuchty S, Rajagopala SV, Blazie SM, Parrish JR, Khuri S, Finley RL Jr, Uetz P.

mSystems. 2017 Jun 6;2(3). pii: e00019-17. doi: 10.1128/mSystems.00019-17. eCollection 2017 May-Jun.

2.

How to measure the impacts of antibiotic resistance and antibiotic development on empiric therapy: new composite indices.

Hughes JS, Hurford A, Finley RL, Patrick DM, Wu J, Morris AM.

BMJ Open. 2016 Dec 16;6(12):e012040. doi: 10.1136/bmjopen-2016-012040.

3.

Risk factors for carriage of antimicrobial-resistant Salmonella spp and Escherichia coli in pet dogs from volunteer households in Ontario, Canada, in 2005 and 2006.

Leonard EK, Pearl DL, Janecko N, Finley RL, Reid-Smith RJ, Weese JS, Peregrine AS.

Am J Vet Res. 2015 Nov;76(11):959-68. doi: 10.2460/ajvr.76.11.959.

PMID:
26512541
4.

A novel ER-microtubule-binding protein, ERLIN2, stabilizes Cyclin B1 and regulates cell cycle progression.

Zhang X, Cai J, Zheng Z, Polin L, Lin Z, Dandekar A, Li L, Sun F, Finley RL Jr, Fang D, Yang ZQ, Zhang K.

Cell Discov. 2015 Sep 8;1:15024. doi: 10.1038/celldisc.2015.24. eCollection 2015.

5.

Canadian integrated program for antimicrobial resistance surveillance: Retail food highlights, 2003-2012.

Avery BP, Parmley EJ, Reid-Smith RJ, Daignault D, Finley RL, Irwin RJ.

Can Commun Dis Rep. 2014 Nov 7;40(Suppl 2):29-35. eCollection 2014 Nov 7.

6.

Estimating the number of human cases of ceftiofur-resistant Salmonella enterica serovar Heidelberg in Québec and Ontario, Canada.

Otto SJ, Carson CA, Finley RL, Thomas MK, Reid-Smith RJ, McEwen SA.

Clin Infect Dis. 2014 Nov 1;59(9):1281-90. doi: 10.1093/cid/ciu496. Epub 2014 Jun 30.

PMID:
24982036
7.

A role for Drosophila Cyclin J in oogenesis revealed by genetic interactions with the piRNA pathway.

Atikukke G, Albosta P, Zhang H, Finley RL Jr.

Mech Dev. 2014 Aug;133:64-76. doi: 10.1016/j.mod.2014.06.001. Epub 2014 Jun 16.

8.

Integrating the interactome and the transcriptome of Drosophila.

Murali T, Pacifico S, Finley RL Jr.

BMC Bioinformatics. 2014 Jun 10;15:177. doi: 10.1186/1471-2105-15-177.

9.

A cross-sectional study examining the prevalence and risk factors for anti-microbial-resistant generic Escherichia coli in domestic dogs that frequent dog parks in three cities in south-western Ontario, Canada.

Procter TD, Pearl DL, Finley RL, Leonard EK, Janecko N, Reid-Smith RJ, Weese JS, Peregrine AS, Sargeant JM.

Zoonoses Public Health. 2014 Jun;61(4):250-9. doi: 10.1111/zph.12064. Epub 2013 Jun 26.

PMID:
23802858
10.

A cross-sectional study examining Campylobacter and other zoonotic enteric pathogens in dogs that frequent dog parks in three cities in south-western Ontario and risk factors for shedding of Campylobacter spp.

Procter TD, Pearl DL, Finley RL, Leonard EK, Janecko N, Reid-Smith RJ, Weese JS, Peregrine AS, Sargeant JM.

Zoonoses Public Health. 2014 May;61(3):208-18. doi: 10.1111/zph.12062. Epub 2013 Jun 26.

PMID:
23802765
11.

The scourge of antibiotic resistance: the important role of the environment.

Finley RL, Collignon P, Larsson DG, McEwen SA, Li XZ, Gaze WH, Reid-Smith R, Timinouni M, Graham DW, Topp E.

Clin Infect Dis. 2013 Sep;57(5):704-10. doi: 10.1093/cid/cit355. Epub 2013 May 30. Review.

PMID:
23723195
12.

Identification of new protein interactions between dengue fever virus and its hosts, human and mosquito.

Mairiang D, Zhang H, Sodja A, Murali T, Suriyaphol P, Malasit P, Limjindaporn T, Finley RL Jr.

PLoS One. 2013;8(1):e53535. doi: 10.1371/journal.pone.0053535. Epub 2013 Jan 11.

13.

Top-k similar graph matching using TraM in biological networks.

Amin MS, Finley RL Jr, Jamil HM.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1790-804.

PMID:
22732692
14.

Assigning confidence scores to protein-protein interactions.

Yu J, Murali T, Finley RL Jr.

Methods Mol Biol. 2012;812:161-74. doi: 10.1007/978-1-61779-455-1_9.

PMID:
22218859
15.

High-throughput yeast two-hybrid screening.

Roberts GG 3rd, Parrish JR, Mangiola BA, Finley RL Jr.

Methods Mol Biol. 2012;812:39-61. doi: 10.1007/978-1-61779-455-1_3.

PMID:
22218853
16.

Interaction trap/two-hybrid system to identify interacting proteins.

Golemis EA, Serebriiskii I, Finley RL Jr, Kolonin MG, Gyuris J, Brent R.

Curr Protoc Cell Biol. 2011 Dec;Chapter 17:Unit 17.3.. doi: 10.1002/0471143030.cb1703s53.

PMID:
22161546
17.

Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling.

Friedman AA, Tucker G, Singh R, Yan D, Vinayagam A, Hu Y, Binari R, Hong P, Sun X, Porto M, Pacifico S, Murali T, Finley RL Jr, Asara JM, Berger B, Perrimon N.

Sci Signal. 2011 Oct 25;4(196):rs10. doi: 10.1126/scisignal.2002029.

18.

Comparison of antimicrobial resistance patterns of Salmonella spp. and Escherichia coli recovered from pet dogs from volunteer households in Ontario (2005-06).

Leonard EK, Pearl DL, Finley RL, Janecko N, Reid-Smith RJ, Peregrine AS, Weese JS.

J Antimicrob Chemother. 2012 Jan;67(1):174-81. doi: 10.1093/jac/dkr430. Epub 2011 Oct 20.

PMID:
22016151
19.

Antagonists of anaphase-promoting complex (APC)-2-cell cycle and apoptosis regulatory protein (CARP)-1 interaction are novel regulators of cell growth and apoptosis.

Puliyappadamba VT, Wu W, Bevis D, Zhang L, Polin L, Kilkuskie R, Finley RL Jr, Larsen SD, Levi E, Miller FR, Wali A, Rishi AK.

J Biol Chem. 2011 Nov 4;286(44):38000-17. doi: 10.1074/jbc.M111.222398. Epub 2011 Sep 8.

20.

A protein network-guided screen for cell cycle regulators in Drosophila.

Guest ST, Yu J, Liu D, Hines JA, Kashat MA, Finley RL Jr.

BMC Syst Biol. 2011 May 6;5:65. doi: 10.1186/1752-0509-5-65.

21.

Interaction trap/two-hybrid system to identify interacting proteins.

Golemis EA, Serebriiskii I, Finley RL Jr, Kolonin MG, Gyuris J, Brent R.

Curr Protoc Neurosci. 2011 Apr;Chapter 4:Unit 4.4. doi: 10.1002/0471142301.ns0404s55.

PMID:
21462161
22.

Factors related to Campylobacter spp. carriage in client-owned dogs visiting veterinary clinics in a region of Ontario, Canada.

Leonard EK, Pearl DL, Janecko N, Weese JS, Reid-Smith RJ, Peregrine AS, Finley RL.

Epidemiol Infect. 2011 Oct;139(10):1531-41. doi: 10.1017/S0950268810002906. Epub 2011 Jan 6.

PMID:
21208515
23.

Digital catfish envenomation mimicking necrotizing fasciitis.

Carty MJ, Kutz RH, Finley RL Jr, Upton J, Rogers GF.

Plast Reconstr Surg. 2010 Nov;126(5):226e-230e. doi: 10.1097/PRS.0b013e3181ef8ede. No abstract available.

PMID:
21042069
24.

DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila.

Murali T, Pacifico S, Yu J, Guest S, Roberts GG 3rd, Finley RL Jr.

Nucleic Acids Res. 2011 Jan;39(Database issue):D736-43. doi: 10.1093/nar/gkq1092. Epub 2010 Oct 29.

25.

Why cyclin Y? A highly conserved cyclin with essential functions.

Liu D, Guest S, Finley RL Jr.

Fly (Austin). 2010 Oct-Dec;4(4):278-82. Epub 2010 Oct 30.

26.

Genetic diversity in Campylobacter jejuni is associated with differential colonization of broiler chickens and C57BL/6J IL10-deficient mice.

Wilson DL, Rathinam VA, Qi W, Wick LM, Landgraf J, Bell JA, Plovanich-Jones A, Parrish J, Finley RL, Mansfield LS, Linz JE.

Microbiology. 2010 Jul;156(Pt 7):2046-57. doi: 10.1099/mic.0.035717-0. Epub 2010 Apr 1.

27.

Evaluation of pet-related management factors and the risk of Salmonella spp. carriage in pet dogs from volunteer households in Ontario (2005-2006).

Leonard EK, Pearl DL, Finley RL, Janecko N, Peregrine AS, Reid-Smith RJ, Weese JS.

Zoonoses Public Health. 2011 Mar;58(2):140-9. doi: 10.1111/j.1863-2378.2009.01320.x.

PMID:
20163574
28.

Cyclin Y is a novel conserved cyclin essential for development in Drosophila.

Liu D, Finley RL Jr.

Genetics. 2010 Apr;184(4):1025-35. doi: 10.1534/genetics.110.114017. Epub 2010 Jan 25.

29.

Loss of mitochondrial DNA in the yeast cardiolipin synthase crd1 mutant leads to up-regulation of the protein kinase Swe1p that regulates the G2/M transition.

Chen S, Liu D, Finley RL Jr, Greenberg ML.

J Biol Chem. 2010 Apr 2;285(14):10397-407. doi: 10.1074/jbc.M110.100784. Epub 2010 Jan 19.

30.

Interaction trap/two-hybrid system to identify interacting proteins.

Golemis EA, Serebriiskii I, Finley RL Jr, Kolonin MG, Gyuris J, Brent R.

Curr Protoc Protein Sci. 2009 Aug;Chapter 19:Unit19.2. doi: 10.1002/0471140864.ps1902s57.

PMID:
19688737
31.

Burden of self-reported acute gastrointestinal illness in Cuba.

Aguiar Prieto P, Finley RL, Muchaal PK, Guerin MT, Isaacs S, Domínguez AC, Coutín Marie G, Perez E.

J Health Popul Nutr. 2009 Jun;27(3):345-57.

32.

Cost-effective strategies for completing the interactome.

Schwartz AS, Yu J, Gardenour KR, Finley RL Jr, Ideker T.

Nat Methods. 2009 Jan;6(1):55-61. doi: 10.1038/nmeth.1283. Epub 2008 Dec 14.

33.

Combining multiple positive training sets to generate confidence scores for protein-protein interactions.

Yu J, Finley RL Jr.

Bioinformatics. 2009 Jan 1;25(1):105-11. doi: 10.1093/bioinformatics/btn597. Epub 2008 Nov 14.

34.

DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions.

Yu J, Pacifico S, Liu G, Finley RL Jr.

BMC Genomics. 2008 Oct 7;9:461. doi: 10.1186/1471-2164-9-461.

35.

Interaction trap/two-hybrid system to identify interacting proteins.

Golemis EA, Serebriiskii I, Finley RL Jr, Kolonin MG, Gyuris J, Brent R.

Curr Protoc Protein Sci. 2001 May;Chapter 19:Unit19.2. doi: 10.1002/0471140864.ps1902s14.

PMID:
18429144
36.

Interaction trap/two-hybrid system to identify interacting proteins.

Golemis EA, Serebriiskii I, Finley RL Jr, Kolonin MG, Gyuris J, Brent R.

Curr Protoc Mol Biol. 2008 Apr;Chapter 20:Unit 20.1. doi: 10.1002/0471142727.mb2001s82.

PMID:
18425763
37.

Interaction trap/two-hybrid system to identify interacting proteins.

Golemis EA, Serebriiskii I, Finley RL Jr, Kolonin MG, Gyuris J, Brent R.

Curr Protoc Mol Biol. 2001 May;Chapter 20:Unit 20.1. doi: 10.1002/0471142727.mb2001s46.

PMID:
18265190
38.

Interaction trap/two-hybrid system to identify interacting proteins.

Golemis EA, Serebriiskii I, Finley RL Jr, Kolonin MG, Gyuris J, Brent R.

Curr Protoc Cell Biol. 2001 May;Chapter 17:Unit 17.3. doi: 10.1002/0471143030.cb1703s08.

39.

Automated segmentation and classification of high throughput yeast assay spots.

Jafari-Khouzani K, Soltanian-Zadeh H, Fotouhi F, Parrish JR, Finley RL Jr.

IEEE Trans Med Imaging. 2007 Oct;26(10):1401-11.

40.

The protein network of bacterial motility.

Rajagopala SV, Titz B, Goll J, Parrish JR, Wohlbold K, McKevitt MT, Palzkill T, Mori H, Finley RL Jr, Uetz P.

Mol Syst Biol. 2007;3:128. Epub 2007 Jul 31.

41.

A proteome-wide protein interaction map for Campylobacter jejuni.

Parrish JR, Yu J, Liu G, Hines JA, Chan JE, Mangiola BA, Zhang H, Pacifico S, Fotouhi F, DiRita VJ, Ideker T, Andrews P, Finley RL Jr.

Genome Biol. 2007;8(7):R130.

42.

Yeast two-hybrid contributions to interactome mapping.

Parrish JR, Gulyas KD, Finley RL Jr.

Curr Opin Biotechnol. 2006 Aug;17(4):387-93. Epub 2006 Jun 27. Review.

PMID:
16806892
43.

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

44.

Tumor-suppressive maspin regulates cell response to oxidative stress by direct interaction with glutathione S-transferase.

Yin S, Li X, Meng Y, Finley RL Jr, Sakr W, Yang H, Reddy N, Sheng S.

J Biol Chem. 2005 Oct 14;280(41):34985-96. Epub 2005 Jul 26.

45.

From protein networks to biological systems.

Uetz P, Finley RL Jr.

FEBS Lett. 2005 Mar 21;579(8):1821-7. Review.

46.

A Drosophila protein-interaction map centered on cell-cycle regulators.

Stanyon CA, Liu G, Mangiola BA, Patel N, Giot L, Kuang B, Zhang H, Zhong J, Finley RL Jr.

Genome Biol. 2004;5(12):R96. Epub 2004 Nov 26.

47.

High-throughput cloning of Campylobacter jejuni ORfs by in vivo recombination in Escherichia coli.

Parrish JR, Limjindaporn T, Hines JA, Liu J, Liu G, Finley RL Jr.

J Proteome Res. 2004 May-Jun;3(3):582-6.

PMID:
15253440
48.

An assessment for the development of a national surveillance system for travel-acquired enteric disease.

Bowman CL, Finley RL, Chandran AU, Isaacs S.

Can Commun Dis Rep. 2004 Apr 15;30(8):69-79. Review. English, French. No abstract available.

49.

A strategy for constructing large protein interaction maps using the yeast two-hybrid system: regulated expression arrays and two-phase mating.

Zhong J, Zhang H, Stanyon CA, Tromp G, Finley RL Jr.

Genome Res. 2003 Dec;13(12):2691-9. Epub 2003 Nov 12.

50.

A protein interaction map of Drosophila melanogaster.

Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL Jr, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J, Rothberg JM.

Science. 2003 Dec 5;302(5651):1727-36. Epub 2003 Nov 6.

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