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Items: 44

1.

Physiological, Genetic, and Transcriptomic Analysis of Alcohol-Induced Delay of Escherichia coli Death.

Ferraro CM, Finkel SE.

Appl Environ Microbiol. 2019 Jan 9;85(2). pii: e02113-18. doi: 10.1128/AEM.02113-18. Print 2019 Jan 15.

PMID:
30389772
2.

Adaptation of Escherichia coli to long-term batch culture in various rich media.

Westphal LL, Lau J, Negro Z, Moreno IJ, Ismail Mohammed W, Lee H, Tang H, Finkel SE, Kram KE.

Res Microbiol. 2018 Apr;169(3):145-156. doi: 10.1016/j.resmic.2018.01.003. Epub 2018 Feb 15.

PMID:
29454026
3.

Changes in Microbial Energy Metabolism Measured by Nanocalorimetry during Growth Phase Transitions.

Robador A, LaRowe DE, Finkel SE, Amend JP, Nealson KH.

Front Microbiol. 2018 Feb 1;9:109. doi: 10.3389/fmicb.2018.00109. eCollection 2018.

4.

Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution.

Kram KE, Geiger C, Ismail WM, Lee H, Tang H, Foster PL, Finkel SE.

mSystems. 2017 Mar 7;2(2). pii: e00192-16. doi: 10.1128/mSystems.00192-16. eCollection 2017 Mar-Apr.

5.

Genomewide Dam Methylation in Escherichia coli during Long-Term Stationary Phase.

Westphal LL, Sauvey P, Champion MM, Ehrenreich IM, Finkel SE.

mSystems. 2016 Dec 13;1(6). pii: e00130-16. eCollection 2016 Nov-Dec.

6.
7.

Rich Medium Composition Affects Escherichia coli Survival, Glycation, and Mutation Frequency during Long-Term Batch Culture.

Kram KE, Finkel SE.

Appl Environ Microbiol. 2015 Jul;81(13):4442-50. doi: 10.1128/AEM.00722-15. Epub 2015 Apr 24.

8.

Culture volume and vessel affect long-term survival, mutation frequency, and oxidative stress of Escherichia coli.

Kram KE, Finkel SE.

Appl Environ Microbiol. 2014 Mar;80(5):1732-8. doi: 10.1128/AEM.03150-13. Epub 2013 Dec 27.

9.

Oxygen consumption rates of bacteria under nutrient-limited conditions.

Riedel TE, Berelson WM, Nealson KH, Finkel SE.

Appl Environ Microbiol. 2013 Aug;79(16):4921-31. doi: 10.1128/AEM.00756-13. Epub 2013 Jun 14.

10.

Competitive fitness during feast and famine: how SOS DNA polymerases influence physiology and evolution in Escherichia coli.

Corzett CH, Goodman MF, Finkel SE.

Genetics. 2013 Jun;194(2):409-20. doi: 10.1534/genetics.113.151837. Epub 2013 Apr 15.

11.

Role of high-fidelity Escherichia coli DNA polymerase I in replication bypass of a deoxyadenosine DNA-peptide cross-link.

Yamanaka K, Minko IG, Finkel SE, Goodman MF, Lloyd RS.

J Bacteriol. 2011 Aug;193(15):3815-21. doi: 10.1128/JB.01550-10. Epub 2011 May 27.

13.

Antiglycation effects of carnosine and other compounds on the long-term survival of Escherichia coli.

Pepper ED, Farrell MJ, Nord G, Finkel SE.

Appl Environ Microbiol. 2010 Dec;76(24):7925-30. doi: 10.1128/AEM.01369-10. Epub 2010 Oct 15.

15.
16.

The utility of Shewanella japonica for microbial fuel cells.

Biffinger JC, Fitzgerald LA, Ray R, Little BJ, Lizewski SE, Petersen ER, Ringeisen BR, Sanders WC, Sheehan PE, Pietron JJ, Baldwin JW, Nadeau LJ, Johnson GR, Ribbens M, Finkel SE, Nealson KH.

Bioresour Technol. 2011 Jan;102(1):290-7. doi: 10.1016/j.biortech.2010.06.078.

PMID:
20663660
17.

A role for single-stranded exonucleases in the use of DNA as a nutrient.

Palchevskiy V, Finkel SE.

J Bacteriol. 2009 Jun;191(11):3712-6. doi: 10.1128/JB.01678-08. Epub 2009 Mar 27.

18.

Adaptive evolution in single species bacterial biofilms.

Kraigsley AM, Finkel SE.

FEMS Microbiol Lett. 2009 Apr;293(1):135-40. doi: 10.1111/j.1574-6968.2009.01526.x. Epub 2009 Feb 23.

19.

Simultaneous analysis of physiological and electrical output changes in an operating microbial fuel cell with Shewanella oneidensis.

Biffinger JC, Ray R, Little BJ, Fitzgerald LA, Ribbens M, Finkel SE, Ringeisen BR.

Biotechnol Bioeng. 2009 Jun 15;103(3):524-31. doi: 10.1002/bit.22266.

PMID:
19189395
20.

Conditional inhibition of autophagy genes in adult Drosophila impairs immunity without compromising longevity.

Ren C, Finkel SE, Tower J.

Exp Gerontol. 2009 Mar;44(3):228-35. doi: 10.1016/j.exger.2008.10.002. Epub 2008 Oct 12.

21.

Replication bypass of interstrand cross-link intermediates by Escherichia coli DNA polymerase IV.

Kumari A, Minko IG, Harbut MB, Finkel SE, Goodman MF, Lloyd RS.

J Biol Chem. 2008 Oct 10;283(41):27433-7. doi: 10.1074/jbc.M801237200. Epub 2008 Aug 11.

22.
23.

Increased internal and external bacterial load during Drosophila aging without life-span trade-off.

Ren C, Webster P, Finkel SE, Tower J.

Cell Metab. 2007 Aug;6(2):144-52.

24.

Using expression arrays for copy number detection: an example from E. coli.

Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S.

BMC Bioinformatics. 2007 Jun 14;8:203.

25.

Role of penicillin-binding protein 1b in competitive stationary-phase survival of Escherichia coli.

Pepper ED, Farrell MJ, Finkel SE.

FEMS Microbiol Lett. 2006 Oct;263(1):61-7.

26.
27.

Long-term survival during stationary phase: evolution and the GASP phenotype.

Finkel SE.

Nat Rev Microbiol. 2006 Feb;4(2):113-20. Review.

PMID:
16415927
28.

Dps protects cells against multiple stresses during stationary phase.

Nair S, Finkel SE.

J Bacteriol. 2004 Jul;186(13):4192-8.

30.

SOS-induced DNA polymerases enhance long-term survival and evolutionary fitness.

Yeiser B, Pepper ED, Goodman MF, Finkel SE.

Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8737-41. Epub 2002 Jun 11.

31.

DNA as a nutrient: novel role for bacterial competence gene homologs.

Finkel SE, Kolter R.

J Bacteriol. 2001 Nov;183(21):6288-93.

32.

Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection.

Frenkiel-Krispin D, Levin-Zaidman S, Shimoni E, Wolf SG, Wachtel EJ, Arad T, Finkel SE, Kolter R, Minsky A.

EMBO J. 2001 Mar 1;20(5):1184-91.

33.

Regulation of adhE (encoding ethanol oxidoreductase) by the Fis protein in Escherichia coli.

Membrillo-Hernández J, Kwon O, De Wulf P, Finkel SE, Lin EC.

J Bacteriol. 1999 Dec;181(23):7390-3.

34.

DNA protection by stress-induced biocrystallization.

Wolf SG, Frenkiel D, Arad T, Finkel SE, Kolter R, Minsky A.

Nature. 1999 Jul 1;400(6739):83-5.

PMID:
10403254
35.

Evolution of microbial diversity during prolonged starvation.

Finkel SE, Kolter R.

Proc Natl Acad Sci U S A. 1999 Mar 30;96(7):4023-7.

36.

The crystal structure of Dps, a ferritin homolog that binds and protects DNA.

Grant RA, Filman DJ, Finkel SE, Kolter R, Hogle JM.

Nat Struct Biol. 1998 Apr;5(4):294-303.

PMID:
9546221
37.

Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts.

Pan CQ, Finkel SE, Cramton SE, Feng JA, Sigman DS, Johnson RC.

J Mol Biol. 1996 Dec 13;264(4):675-95.

PMID:
8980678
38.
39.

Structure of the Escherichia coli Fis-DNA complex probed by protein conjugated with 1,10-phenanthroline copper(I) complex.

Pan CQ, Feng JA, Finkel SE, Landgraf R, Sigman D, Johnson RC.

Proc Natl Acad Sci U S A. 1994 Mar 1;91(5):1721-5.

40.

The Fis protein: it's not just for DNA inversion anymore.

Finkel SE, Johnson RC.

Mol Microbiol. 1993 Mar;7(6):1023. No abstract available.

PMID:
8483413
41.

DNA binding and bending are necessary but not sufficient for Fis-dependent activation of rrnB P1.

Gosink KK, Ross W, Leirmo S, Osuna R, Finkel SE, Johnson RC, Gourse RL.

J Bacteriol. 1993 Mar;175(6):1580-9.

42.

The Fis protein: it's not just for DNA inversion anymore.

Finkel SE, Johnson RC.

Mol Microbiol. 1992 Nov;6(22):3257-65. Review. Erratum in: Mol Microbiol. 1993 Mar;7(6):1023.

PMID:
1484481
43.

The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.

Yuan HS, Finkel SE, Feng JA, Kaczor-Grzeskowiak M, Johnson RC, Dickerson RE.

Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9558-62.

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