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Items: 47

1.

Characterization of strains of Neisseria meningitidis causing meningococcal meningitis in Mozambique, 2014: Implications for vaccination against meningococcal meningitis.

Munguambe AM, de Almeida AECC, Nhantumbo AA, Come CE, Zimba TF, Paulo Langa J, de Filippis I, Gudo ES.

PLoS One. 2018 Aug 8;13(8):e0197390. doi: 10.1371/journal.pone.0197390. eCollection 2018.

2.

Epidemiology and molecular characterization of Neisseria lactamica carried in 11-19 years old students in Salvador, Brazil.

Moura ARSS, Kretz CB, Ferreira ÍE, Nunes AMPB, de Filippis I, de Moraes JC, Reis MG, McBride AJA, Wang X, Campos LC.

Int J Med Microbiol. 2018 Jun;308(4):454-458. doi: 10.1016/j.ijmm.2018.03.007. Epub 2018 Mar 27.

PMID:
29605532
3.

Phenotypic characterization of Cronobacter spp. strains isolated from foods and clinical specimens in Brazil.

Umeda NS, de Filippis I, Forsythe SJ, Brandão MLL.

Food Res Int. 2017 Dec;102:61-67. doi: 10.1016/j.foodres.2017.09.083. Epub 2017 Sep 28.

PMID:
29195992
4.

The invasive MenC cc103 lineage with penicillin reduced susceptibility persisting in Brazil.

Fonseca ÉL, Marin MA, Freitas FS, Vitório BSA, de Araújo FMG, Camargo DRA, Coimbra RS, De Filippis IR, Vicente ACP.

Int J Med Microbiol. 2017 Sep;307(6):287-290. doi: 10.1016/j.ijmm.2017.05.004. Epub 2017 May 25.

PMID:
28587735
5.

The invasive Neisseria meningitidis MenC CC103 from Brazil is characterized by an accessory gene repertoire.

Marin MA, Fonseca E, Encinas F, Freitas F, Camargo DA, Coimbra RS, de Filippis I, Vicente AC.

Sci Rep. 2017 May 9;7(1):1617. doi: 10.1038/s41598-017-01671-x.

6.

Fatal case of co-infection with dengue virus and Neisseria meningitidis during a dengue epidemic in the state of Rio de Janeiro, Brazil.

de Filippis I, Guerra Nunes PC, de Andrade CF, Gonçalves BS, de Araújo ES, Bezerra IO, da Silva IR, Nogueira RM, de Filippis AM.

JMM Case Rep. 2016 Aug 30;3(4):e005055. doi: 10.1099/jmmcr.0.005055. eCollection 2016 Aug.

7.

Predicting Protein Dynamics and Allostery Using Multi-Protein Atomic Distance Constraints.

Greener JG, Filippis I, Sternberg MJE.

Structure. 2017 Mar 7;25(3):546-558. doi: 10.1016/j.str.2017.01.008. Epub 2017 Feb 9.

8.

Isolation, molecular and phenotypic characterization, and antibiotic susceptibility of Cronobacter spp. from Brazilian retail foods.

Brandão MLL, Umeda NS, Jackson E, Forsythe SJ, de Filippis I.

Food Microbiol. 2017 May;63:129-138. doi: 10.1016/j.fm.2016.11.011. Epub 2016 Nov 24.

9.

Comparative proteomics of cucurbit phloem indicates both unique and shared sets of proteins.

Lopez-Cobollo RM, Filippis I, Bennett MH, Turnbull CG.

Plant J. 2016 Nov;88(4):633-647. doi: 10.1111/tpj.13288. Epub 2016 Sep 17.

10.

Comparison of PCR-based methods for the simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and Streptococcus pneumoniae in clinical samples.

de Filippis I, de Andrade CF, Caldeira N, de Azevedo AC, de Almeida AE.

Braz J Infect Dis. 2016 Jul-Aug;20(4):335-41. doi: 10.1016/j.bjid.2016.04.005. Epub 2016 May 30.

11.

Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study.

Calvet G, Aguiar RS, Melo ASO, Sampaio SA, de Filippis I, Fabri A, Araujo ESM, de Sequeira PC, de Mendonça MCL, de Oliveira L, Tschoeke DA, Schrago CG, Thompson FL, Brasil P, Dos Santos FB, Nogueira RMR, Tanuri A, de Filippis AMB.

Lancet Infect Dis. 2016 Jun;16(6):653-660. doi: 10.1016/S1473-3099(16)00095-5. Epub 2016 Feb 18.

PMID:
26897108
12.

HIV-1 Genetic Diversity and Transmitted Drug Resistance in Antiretroviral Treatment-Naive Individuals from Amapá State, Northern Brazil.

Dos Anjos Silva L, Divino F, da Silva Rêgo MO, Lima Lopes IG, Nóbrega Costa CM, da Silva Pereira FC, de Filippis I, Bello G.

AIDS Res Hum Retroviruses. 2016 Apr;32(4):373-6. doi: 10.1089/AID.2015.0280. Epub 2015 Dec 1.

PMID:
26529282
13.

Exploring the cellular basis of human disease through a large-scale mapping of deleterious genes to cell types.

Cornish AJ, Filippis I, David A, Sternberg MJ.

Genome Med. 2015 Sep 1;7:95. doi: 10.1186/s13073-015-0212-9.

14.

Genotypic characteristics of multidrug-resistant Pseudomonas aeruginosa from hospital wastewater treatment plant in Rio de Janeiro, Brazil.

Miranda CC, de Filippis I, Pinto LH, Coelho-Souza T, Bianco K, Cacci LC, Picão RC, Clementino MM.

J Appl Microbiol. 2015 Jun;118(6):1276-86. doi: 10.1111/jam.12792. Epub 2015 Apr 22.

15.

Genome3D: exploiting structure to help users understand their sequences.

Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cozzetto D, Dana JM, Filippis I, Gough J, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mistry J, Murzin AG, Ochoa-Montaño B, Oates ME, Punta M, Rackham OJ, Stahlhacke J, Sternberg MJ, Velankar S, Orengo C.

Nucleic Acids Res. 2015 Jan;43(Database issue):D382-6. doi: 10.1093/nar/gku973. Epub 2014 Oct 27.

16.

SuSPect: enhanced prediction of single amino acid variant (SAV) phenotype using network features.

Yates CM, Filippis I, Kelley LA, Sternberg MJ.

J Mol Biol. 2014 Jul 15;426(14):2692-701. doi: 10.1016/j.jmb.2014.04.026. Epub 2014 May 5.

17.

Using a periclinal chimera to unravel layer-specific gene expression in plants.

Filippis I, Lopez-Cobollo R, Abbott J, Butcher S, Bishop GJ.

Plant J. 2013 Sep;75(6):1039-49. doi: 10.1111/tpj.12250. Epub 2013 Jul 19.

18.

Replacement of Neisseria meningitidis C cc11/ET-15 variant by a cc103 hypervirulent clone, Brazil 2005-2011.

Sardinha G, Cordeiro S, Gomes E, Romanelli C, Andrade C, Reis J, de Filippis I.

Diagn Microbiol Infect Dis. 2013 Aug;76(4):524-5. doi: 10.1016/j.diagmicrobio.2013.04.008. Epub 2013 May 15.

PMID:
23684323
19.

Extended genetic analysis of Brazilian isolates of Bacillus cereus and Bacillus thuringiensis.

Zahner V, Silva AC, Moraes GP, McIntosh D, Filippis Id.

Mem Inst Oswaldo Cruz. 2013 Feb;108(1):65-72.

20.

Haemophilus influenzae serotype b and a capsule-deficient type mutant (b-) invasive disease in a partially vaccinated child in Brazil.

Caldeira NG, de Filippis I, Arruda TC, Real ME, de Jesus AB, de Almeida AE.

J Med Microbiol. 2013 Apr;62(Pt 4):655-7. doi: 10.1099/jmm.0.052357-0. Epub 2012 Dec 21.

PMID:
23264458
21.

RAPPORT: running scientific high-performance computing applications on the cloud.

Cohen J, Filippis I, Woodbridge M, Bauer D, Hong NC, Jackson M, Butcher S, Colling D, Darlington J, Fuchs B, Harvey M.

Philos Trans A Math Phys Eng Sci. 2012 Dec 10;371(1983):20120073. doi: 10.1098/rsta.2012.0073. Print 2013 Jan 28.

22.

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.

Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cuff A, Dana JM, Filippis I, Gough J, Hunter S, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mitchell A, Murzin AG, Ochoa-Montaño B, Rackham OJ, Smith J, Sternberg MJ, Velankar S, Yeats C, Orengo C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D499-507. doi: 10.1093/nar/gks1266. Epub 2012 Nov 30.

23.

Molecular epidemiology of Neisseria meningitidis serogroup B in Brazil.

de Filippis I, de Lemos AP, Hostetler JB, Wollenberg K, Sacchi CT, Dunning Hotopp JC, Harrison LH, Bash MC, Prevots DR.

PLoS One. 2012;7(3):e33016. doi: 10.1371/journal.pone.0033016. Epub 2012 Mar 14. Erratum in: PLoS One. 2012;7(7): doi/10.1371/annotation/6318254d-3f13-4cca-8bbe-08d0ff29aa64. Dunning Hotopp, Julie C [added].

24.

Isolation of Brevibacillus brevis from tracheal aspirates of a hospitalized patient.

Gomes MB, Rodrigues AC, Assef AP, De Filippis I, Asensi MD, Zahner V.

APMIS. 2011 Dec;119(12):901-2. doi: 10.1111/j.1600-0463.2011.02805.x. Epub 2011 Sep 3. No abstract available.

PMID:
22085367
25.

Molecular characterization of quinolone-resistant Neisseria gonorrhoeae isolates from Brazil.

Uehara AA, Amorin EL, Ferreira Mde F, Andrade CF, Clementino MB, de Filippis I, Neves FP, Pinto Tde C, Teixeira LM, Giambiagi-Demarval M, Fracalanzza SE.

J Clin Microbiol. 2011 Dec;49(12):4208-12. doi: 10.1128/JCM.01175-11. Epub 2011 Oct 5.

26.
27.

Presence of qacEΔ1 gene and susceptibility to a hospital biocide in clinical isolates of Pseudomonas aeruginosa resistant to antibiotics.

Romão C, Miranda CA, Silva J, Mandetta Clementino M, de Filippis I, Asensi M.

Curr Microbiol. 2011 Jul;63(1):16-21. doi: 10.1007/s00284-011-9934-0. Epub 2011 Apr 12.

PMID:
21479930
28.

Changes in Haemophilus influenzae capsule locus: possible emergence of novel variants in Brazil.

Batalha A, de Almeida AE, Caldeira NG, de Filippis I.

Diagn Microbiol Infect Dis. 2010 Oct;68(2):97-102. doi: 10.1016/j.diagmicrobio.2010.05.011.

PMID:
20846580
29.

PorA VR3 Typing Database: a web-based resource for the determination of PorA VR3 alleles of Neisseria meningitidis.

de Filippis I, Gopalan V, Huyen Y.

Infect Genet Evol. 2011 Jan;11(1):248-9. doi: 10.1016/j.meegid.2010.08.011. Epub 2010 Aug 27.

PMID:
20801234
30.

Urinary tract infection caused by nontypable Haemophilus influenzae in the elderly.

de Almeida AE, Caldeira NG, Schroeder LF, Batalha de Jesus AA, Serradas LR, da Costa AF, Lima CO, de Filippis I.

J Med Microbiol. 2010 Sep;59(Pt 9):1132-3. doi: 10.1099/jmm.0.019224-0. Epub 2010 Jun 24. No abstract available.

PMID:
20576753
31.

Optimal contact definition for reconstruction of contact maps.

Duarte JM, Sathyapriya R, Stehr H, Filippis I, Lappe M.

BMC Bioinformatics. 2010 May 27;11:283. doi: 10.1186/1471-2105-11-283.

32.

Defining an essence of structure determining residue contacts in proteins.

Sathyapriya R, Duarte JM, Stehr H, Filippis I, Lappe M.

PLoS Comput Biol. 2009 Dec;5(12):e1000584. doi: 10.1371/journal.pcbi.1000584. Epub 2009 Dec 4.

33.

Designing evolvable libraries using multi-body potentials.

Lappe M, Bagler G, Filippis I, Stehr H, Duarte JM, Sathyapriya R.

Curr Opin Biotechnol. 2009 Aug;20(4):437-46. doi: 10.1016/j.copbio.2009.07.008. Epub 2009 Aug 26. Review.

PMID:
19713097
34.

Optimized null model for protein structure networks.

Milenković T, Filippis I, Lappe M, Przulj N.

PLoS One. 2009 Jun 26;4(6):e5967. doi: 10.1371/journal.pone.0005967.

35.

Quest for a broad-range vaccine against Neisseria meningitidis serogroup B: implications of genetic variations of the surface-exposed proteins.

de Filippis I.

J Med Microbiol. 2009 Sep;58(Pt 9):1127-32. doi: 10.1099/jmm.0.011189-0. Epub 2009 Jun 15. Review.

PMID:
19528146
36.

Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys.

Bolser DM, Filippis I, Stehr H, Duarte J, Lappe M.

BMC Struct Biol. 2008 Dec 8;8:53. doi: 10.1186/1472-6807-8-53.

37.

Detection of protein catalytic residues at high precision using local network properties.

Slama P, Filippis I, Lappe M.

BMC Bioinformatics. 2008 Dec 4;9:517. doi: 10.1186/1471-2105-9-517.

38.

Septic arthritis due to Haemophilus influenzae serotype a in the post-vaccination era in Brazil.

de Almeida AE, Schroeder LF, Caldeira NG, da Silva NM, Batista PR, Gallo MP, de Filippis I.

J Med Microbiol. 2008 Oct;57(Pt 10):1311-2. doi: 10.1099/jmm.0.2008/001669-0. No abstract available.

PMID:
18809567
39.

Neisseria meningitidis PorA variable regions: rapid detection of P1.7 and P1.19 variants by PCR.

de Filippis I, de Andrade CF, de Almeida AE, Clementino MM, Fernandes CA, de Carvalho ML, Vicente AC.

Lett Appl Microbiol. 2007 Oct;45(4):426-31.

40.

PorA variable antigenic regions VR1, VR2, and VR3 of Neisseria meningitidis serogroups B and C isolated in Brazil from 1999 to 2004.

de Filippis I, de Andrade CF, Silva L, Prevots DR, Vicente AC.

Infect Immun. 2007 Jul;75(7):3683-5. Epub 2007 May 14.

41.

Antimicrobial susceptibility of Haemophilus influenzae isolates collected from 4 centers in Brazil (1990-2003).

de Almeida AE, de Filippis I, Ferreira DG, de Abreu AO, Rebelo C, Gemal AL, Marzochi KB.

Diagn Microbiol Infect Dis. 2006 Jan;54(1):57-62. Epub 2005 Nov 14.

PMID:
16290031
43.

Occurrence of Haemophilus influenzae strains in three Brazilian states since the introduction of a conjugate Haemophilus influenzae type b vaccine.

de Almeida AE, de Filippis I, Abreu AO, Ferreira DG, Gemal AL, Marzochi KB.

Braz J Med Biol Res. 2005 May;38(5):777-81. Epub 2005 May 25.

44.

Rapid detection of Neisseria meningitidis in cerebrospinal fluid by one-step polymerase chain reaction of the nspA gene.

de Filippis I, do Nascimento CR, Clementino MB, Sereno AB, Rebelo C, Souza NN, Riley LW.

Diagn Microbiol Infect Dis. 2005 Feb;51(2):85-90.

PMID:
15698712
45.

Genetic diversity of Neisseria meningitidis strains isolated in Rio de Janeiro, Brazil, evaluated by multilocus enzyme electrophoresis.

de Filippis I, Salles CA, Zahner V, do Nascimento CR, Momen H.

Lett Appl Microbiol. 2004;39(3):232-9.

46.
47.

Development of a collection of bacteria causing meningitis in Rio de Janeiro from 1990 to 1991.

de Filippis I, Soares BE, Valentim JC, de Almeida AE.

Mem Inst Oswaldo Cruz. 1995 Jan-Feb;90(1):21-4.

PMID:
8524079

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