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Items: 1 to 50 of 70

1.

Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes.

Sousa TJ, Parise D, Profeta R, Parise MTD, Gomide ACP, Kato RB, Pereira FL, Figueiredo HCP, Ramos R, Brenig B, Costa da Silva ALD, Ghosh P, Barh D, Góes-Neto A, Azevedo V.

Sci Rep. 2019 Nov 8;9(1):16387. doi: 10.1038/s41598-019-52695-4.

2.

Proteomic fingerprinting for the fast and accurate identification of species in the Polyporoid and Hymenochaetoid fungi clades.

Tomé LMR, Badotti F, Assis GBN, Fonseca PLC, da Silva GA, da Silveira RMB, Costa-Rezende DH, Dos Santos ERD, de Carvalho Azevedo VA, Figueiredo HCP, Góes-Neto A.

J Proteomics. 2019 Jul 15;203:103390. doi: 10.1016/j.jprot.2019.103390. Epub 2019 May 23.

PMID:
31129267
3.

Effects of temperature changes in the transcriptional profile of the emerging fish pathogen Francisella noatunensis subsp. orientalis.

Pereira FL, Tavares GC, de Carvalho AF, Rosa JCC, Rezende CP, Leal CAG, Figueiredo HCP.

Microb Pathog. 2019 Aug;133:103548. doi: 10.1016/j.micpath.2019.103548. Epub 2019 May 18.

PMID:
31112771
4.

Severe outbreak of Centrocestus formosanus (Trematoda: Heterophyidae) in farm-raised ornamental platies Xiphophorus maculatus.

Leibowitz MP, Santos NRV, Tavares GC, Assis GBN, Dorella FA, Figueiredo HCP, Leal CAG.

Dis Aquat Organ. 2019 May 2;134(2):107-111. doi: 10.3354/dao03361.

PMID:
31043578
5.

Streptococcus agalactiae Sequence Type 283 in Farmed Fish, Brazil.

Leal CAG, Queiroz GA, Pereira FL, Tavares GC, Figueiredo HCP.

Emerg Infect Dis. 2019 Apr;25(4):776-779. doi: 10.3201/eid2504.180543.

6.

Molecular epidemiology of Clostridioides (previously Clostridium) difficile isolates from a university hospital in Minas Gerais, Brazil.

Diniz AN, de Oliveira Júnior CA, Vilela EG, Figueiredo HCP, Rupnik M, Wilcox MH, Fawley WN, Blanc DS, Faria Lobato FC, Silva ROS.

Anaerobe. 2019 Apr;56:34-39. doi: 10.1016/j.anaerobe.2019.01.010. Epub 2019 Jan 29.

PMID:
30703440
7.

Economic appraisal of vaccination against Streptoccocus agalactiae in Nile tilapia farms in Brazil.

Delphino MKVC, Barone RSC, Leal CAG, Figueiredo HCP, Gardner IA, Gonçalves VSP.

Prev Vet Med. 2019 Jan 1;162:131-135. doi: 10.1016/j.prevetmed.2018.12.003. Epub 2018 Dec 6.

PMID:
30621892
8.

Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach.

Tavares GC, Pereira FL, Barony GM, Rezende CP, da Silva WM, de Souza GHMF, Verano-Braga T, de Carvalho Azevedo VA, Leal CAG, Figueiredo HCP.

BMC Genomics. 2019 Jan 7;20(1):11. doi: 10.1186/s12864-018-5423-1.

9.

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature.

Tavares GC, Carvalho AF, Pereira FL, Rezende CP, Azevedo VAC, Leal CAG, Figueiredo HCP.

Front Microbiol. 2018 Nov 2;9:2639. doi: 10.3389/fmicb.2018.02639. eCollection 2018.

10.

Rapidly evolving changes and gene loss associated with host switching in Corynebacterium pseudotuberculosis.

Viana MVC, Sahm A, Góes Neto A, Figueiredo HCP, Wattam AR, Azevedo V.

PLoS One. 2018 Nov 12;13(11):e0207304. doi: 10.1371/journal.pone.0207304. eCollection 2018.

11.

Complete genome sequencing of sixteen Francisella noatunensis subsp. orientalis isolates: A genomic approach for molecular characterization and spread dynamics of this clonal population.

Pereira FL, Gonçalves LA, Tavares GC, Soares SC, Dorella FA, de Carvalho AF, Leibowitz MP, Leal CAG, Azevedo VAC, Figueiredo HCP.

Genomics. 2018 Nov;110(6):442-449. doi: 10.1016/j.ygeno.2018.10.011. Epub 2018 Oct 24.

PMID:
30367926
12.

First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico.

Parise D, Parise MTD, Viana MVC, Muñoz-Bucio AV, Cortés-Pérez YA, Arellano-Reynoso B, Díaz-Aparicio E, Dorella FA, Pereira FL, Carvalho AF, Figueiredo HCP, Ghosh P, Barh D, Gomide ACP, Azevedo VAC.

Stand Genomic Sci. 2018 Oct 10;13:21. doi: 10.1186/s40793-018-0325-z. eCollection 2018.

13.

Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic Propionibacterium freudenreichii CIRM-BIA 129.

do Carmo FLR, Silva WM, Tavares GC, Ibraim IC, Cordeiro BF, Oliveira ER, Rabah H, Cauty C, da Silva SH, Canário Viana MV, Caetano ACB, Dos Santos RG, de Oliveira Carvalho RD, Jardin J, Pereira FL, Folador EL, Le Loir Y, Figueiredo HCP, Jan G, Azevedo V.

Front Microbiol. 2018 Aug 17;9:1807. doi: 10.3389/fmicb.2018.01807. eCollection 2018.

14.

Transcriptome analysis of Corynebacterium pseudotuberculosis biovar Equi in two conditions of the environmental stress.

Gomide ACP, Ibraim IC, Alves JTC, de Sá PG, de Oliveira Silva YR, Santana MP, Silva WM, Folador EL, Mariano DCB, de Paula Castro TL, Barbosa S, Dorella FA, Carvalho AF, Pereira FL, Leal CAG, Figueiredo HCP, Azevedo V, Silva A, Folador ARC.

Gene. 2018 Nov 30;677:349-360. doi: 10.1016/j.gene.2018.08.028. Epub 2018 Aug 8.

PMID:
30098432
15.

Thalamic Proteome Changes and Behavioral Impairments in Thiamine-deficient Rats.

Nunes PT, Gómez-Mendoza DP, Rezende CP, Figueiredo HCP, Ribeiro AM.

Neuroscience. 2018 Aug 10;385:181-197. doi: 10.1016/j.neuroscience.2018.06.003. Epub 2018 Jun 9.

PMID:
29894819
16.

Label-free proteome of water buffalo (Bubalus bubalis) seminal plasma.

Brito MF, Auler PA, Tavares GC, Rezende CP, Almeida GMF, Pereira FL, Leal CAG, Moura AA, Figueiredo HCP, Henry M.

Reprod Domest Anim. 2018 Oct;53(5):1243-1246. doi: 10.1111/rda.13206. Epub 2018 Jun 11.

PMID:
29888513
17.

The Druggable Pocketome of Corynebacterium diphtheriae: A New Approach for in silico Putative Druggable Targets.

Hassan SS, Jamal SB, Radusky LG, Tiwari S, Ullah A, Ali J, Behramand, de Carvalho PVSD, Shams R, Khan S, Figueiredo HCP, Barh D, Ghosh P, Silva A, Baumbach J, Röttger R, Turjanski AG, Azevedo VAC.

Front Genet. 2018 Feb 13;9:44. doi: 10.3389/fgene.2018.00044. eCollection 2018.

18.

Insight of Genus Corynebacterium: Ascertaining the Role of Pathogenic and Non-pathogenic Species.

Oliveira A, Oliveira LC, Aburjaile F, Benevides L, Tiwari S, Jamal SB, Silva A, Figueiredo HCP, Ghosh P, Portela RW, De Carvalho Azevedo VA, Wattam AR.

Front Microbiol. 2017 Oct 12;8:1937. doi: 10.3389/fmicb.2017.01937. eCollection 2017. Review.

19.

Large-scale genomic analyses reveal the population structure and evolutionary trends of Streptococcus agalactiae strains in Brazilian fish farms.

Barony GM, Tavares GC, Pereira FL, Carvalho AF, Dorella FA, Leal CAG, Figueiredo HCP.

Sci Rep. 2017 Oct 19;7(1):13538. doi: 10.1038/s41598-017-13228-z.

20.

Identification of bluetongue virus serotypes 1, 4, and 17 co-infections in sheep flocks during outbreaks in Brazil.

Guimarães LLB, Rosa JCC, Matos ACD, Cruz RAS, Guedes MIMC, Dorella FA, Figueiredo HCP, Pavarini SP, Sonne L, Lobato ZIP, Driemeier D.

Res Vet Sci. 2017 Aug;113:87-93. doi: 10.1016/j.rvsc.2017.09.001. Epub 2017 Sep 5.

PMID:
28918235
21.

Use of MALDI-TOF Mass Spectrometry for the Fast Identification of Gram-Positive Fish Pathogens.

Assis GBN, Pereira FL, Zegarra AU, Tavares GC, Leal CA, Figueiredo HCP.

Front Microbiol. 2017 Aug 9;8:1492. doi: 10.3389/fmicb.2017.01492. eCollection 2017.

22.

Quantitative Proteomic Analysis Reveals Changes in the Benchmark Corynebacterium pseudotuberculosis Biovar Equi Exoproteome after Passage in a Murine Host.

Silva WM, Carvalho RDO, Dorella FA, Folador EL, Souza GHMF, Pimenta AMC, Figueiredo HCP, Le Loir Y, Silva A, Azevedo V.

Front Cell Infect Microbiol. 2017 Jul 25;7:325. doi: 10.3389/fcimb.2017.00325. eCollection 2017.

23.

Clostridium perfringens and C. difficile in parvovirus-positive dogs.

Silva ROS, Dorella FA, Figueiredo HCP, Costa ÉA, Pelicia V, Ribeiro BLD, Ribeiro MG, Paes AC, Megid J, Lobato FCF.

Anaerobe. 2017 Dec;48:66-69. doi: 10.1016/j.anaerobe.2017.07.001. Epub 2017 Jul 19.

PMID:
28733230
24.

Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays.

Oliveira LC, Saraiva TD, Silva WM, Pereira UP, Campos BC, Benevides LJ, Rocha FS, Figueiredo HC, Azevedo V, Soares SC.

PLoS One. 2017 Apr 6;12(4):e0175116. doi: 10.1371/journal.pone.0175116. eCollection 2017.

25.

Evaluation of Potential Probiotics Isolated from Human Milk and Colostrum.

Damaceno QS, Souza JP, Nicoli JR, Paula RL, Assis GB, Figueiredo HC, Azevedo V, Martins FS.

Probiotics Antimicrob Proteins. 2017 Dec;9(4):371-379. doi: 10.1007/s12602-017-9270-1.

PMID:
28374172
26.

Secretion of biologically active pancreatitis-associated protein I (PAP) by genetically modified dairy Lactococcus lactis NZ9000 in the prevention of intestinal mucositis.

Carvalho RD, Breyner N, Menezes-Garcia Z, Rodrigues NM, Lemos L, Maioli TU, da Gloria Souza D, Carmona D, de Faria AM, Langella P, Chatel JM, Bermúdez-Humarán LG, Figueiredo HC, Azevedo V, de Azevedo MS.

Microb Cell Fact. 2017 Feb 13;16(1):27. doi: 10.1186/s12934-017-0624-x.

27.

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology.

Mariano DC, Pereira FL, Aguiar EL, Oliveira LC, Benevides L, Guimarães LC, Folador EL, Sousa TJ, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA.

BMC Bioinformatics. 2016 Dec 15;17(Suppl 18):456. doi: 10.1186/s12859-016-1344-7.

28.

Sensitivity and specificity of real-time PCR and bacteriological culture for francisellosis in farm-raised Nile tilapia (Oreochromis niloticus L.).

Assis GBN, de Oliveira TF, Gardner IA, Figueiredo HCP, Leal CAG.

J Fish Dis. 2017 Jun;40(6):785-795. doi: 10.1111/jfd.12559. Epub 2016 Sep 27.

PMID:
27670740
29.

Complete Genome Sequence of the Attenuated Corynebacterium pseudotuberculosis Strain T1.

Almeida S, Loureiro D, Portela RW, Mariano DC, Sousa TJ, Pereira FL, Dorella FA, Carvalho AF, Moura-Costa LF, Leal CA, Figueiredo HC, Meyer R, Azevedo V.

Genome Announc. 2016 Sep 8;4(5). pii: e00947-16. doi: 10.1128/genomeA.00947-16.

30.

Lactococcus garvieae outbreaks in Brazilian farms Lactococcosis in Pseudoplatystoma sp. - development of an autogenous vaccine as a control strategy.

Fukushima HC, Leal CA, Cavalcante RB, Figueiredo HC, Arijo S, Moriñigo MA, Ishikawa M, Borra RC, Ranzani-Paiva MJ.

J Fish Dis. 2017 Feb;40(2):263-272. doi: 10.1111/jfd.12509. Epub 2016 Jul 26.

PMID:
27457188
31.

Complete genome sequence of Streptococcus agalactiae strain GBS85147 serotype of type Ia isolated from human oropharynx.

de Aguiar EL, Mariano DC, Viana MV, Benevides Lde J, de Souza Rocha F, de Castro Oliveira L, Pereira FL, Dorella FA, Leal CA, de Carvalho AF, Santos GS, Mattos-Guaraldi AL, Nagao PE, de Castro Soares S, Hassan SS, Pinto AC, Figueiredo HC, Azevedo V.

Stand Genomic Sci. 2016 Jun 3;11:39. doi: 10.1186/s40793-016-0158-6. eCollection 2016.

32.

Natural coinfection by Streptococcus agalactiae and Francisella noatunensis subsp. orientalis in farmed Nile tilapia (Oreochromis niloticus L.).

Assis GB, Tavares GC, Pereira FL, Figueiredo HC, Leal CA.

J Fish Dis. 2017 Jan;40(1):51-63. doi: 10.1111/jfd.12493. Epub 2016 May 4.

PMID:
27144661
33.

Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002.

Mariano DC, Sousa Tde J, Pereira FL, Aburjaile F, Barh D, Rocha F, Pinto AC, Hassan SS, Saraiva TD, Dorella FA, de Carvalho AF, Leal CA, Figueiredo HC, Silva A, Ramos RT, Azevedo VA.

BMC Genomics. 2016 Apr 30;17:315. doi: 10.1186/s12864-016-2673-7.

34.

Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior.

Gonçalves LA, de Castro Soares S, Pereira FL, Dorella FA, de Carvalho AF, de Freitas Almeida GM, Leal CA, Azevedo V, Figueiredo HC.

Stand Genomic Sci. 2016 Apr 12;11:30. doi: 10.1186/s40793-016-0151-0. eCollection 2016.

35.

Evaluating the efficacy of the new Ion PGM Hi-Q Sequencing Kit applied to bacterial genomes.

Pereira FL, Soares SC, Dorella FA, Leal CA, Figueiredo HC.

Genomics. 2016 May;107(5):189-98. doi: 10.1016/j.ygeno.2016.03.004. Epub 2016 Mar 24.

36.

Complete genome sequence of Peptoclostridium difficile strain Z31.

Pereira FL, Oliveira Júnior CA, Silva ROS, Dorella FA, Carvalho AF, Almeida GMF, Leal CAG, Lobato FCF, Figueiredo HCP.

Gut Pathog. 2016 Apr 1;8:11. doi: 10.1186/s13099-016-0095-3. eCollection 2016.

37.

Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows.

Guimarães LC, Lopes T, Ramos RT, Carneiro AR, Cavalcante AL, Barreto D, de Sá PC, Veras AA, Rocha FS, Bagano P, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Bizet C, Guiso N, Badell E, Figueiredo HC, Azevedo V, Silva A.

J Genomics. 2016 Mar 2;4:7-9. doi: 10.7150/jgen.14456. eCollection 2016.

38.

Complete Genome Sequence of Corynebacterium pseudotuberculosis Viscerotropic Strain N1.

Loureiro D, Portela RW, Sousa TJ, Rocha F, Pereira FL, Dorella FA, Carvalho AF, Menezes N, Macedo ES, Moura-Costa LF, Meyer R, Leal CA, Figueiredo HC, Azevedo V.

Genome Announc. 2016 Jan 28;4(1). pii: e01673-15. doi: 10.1128/genomeA.01673-15.

39.

Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil.

Figueiredo HC, Leal CA, Pereira FL, Soares SC, Gonçalves LA, Dorella FA, Carvalho AF, Azevedo VA.

Genome Announc. 2016 Jan 21;4(1). pii: e01603-15. doi: 10.1128/genomeA.01603-15.

40.

Draft Genome Sequences of Two Salmonella enterica Serotype Infantis Strains Isolated from a Captive Western Lowland Gorilla (Gorilla gorilla gorilla) and a Cohabitant Black and White Tegu (Tupinambis merianae) in Brazil.

Paixão TA, Coura FM, Malta MC, Tinoco HP, Pessanha AT, Pereira FL, Leal CA, Heinemann MB, Figueiredo HC, Santos RL.

Genome Announc. 2016 Jan 21;4(1). pii: e01590-15. doi: 10.1128/genomeA.01590-15.

41.

Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout.

Figueiredo HC, Soares SC, Pereira FL, Dorella FA, Carvalho AF, Teixeira JP, Azevedo VA, Leal CA.

BMC Genomics. 2015 Dec 22;16:1095. doi: 10.1186/s12864-015-2324-4.

42.

New hosts and genetic diversity of Flavobacterium columnare isolated from Brazilian native species and Nile tilapia.

Barony GM, Tavares GC, Assis GB, Luz RK, Figueiredo HC, Leal CA.

Dis Aquat Organ. 2015 Nov 17;117(1):1-11. doi: 10.3354/dao02931.

PMID:
26575151
43.

Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests.

Pacheco LG, Mattos-Guaraldi AL, Santos CS, Veras AA, Guimarães LC, Abreu V, Pereira FL, Soares SC, Dorella FA, Carvalho AF, Leal CG, Figueiredo HC, Ramos JN, Vieira VV, Farfour E, Guiso N, Hirata R Jr, Azevedo V, Silva A, Ramos RT.

J Genomics. 2015 Aug 1;3:82-4. doi: 10.7150/jgen.12886. eCollection 2015.

44.

GIPSy: Genomic island prediction software.

Soares SC, Geyik H, Ramos RT, de Sá PH, Barbosa EG, Baumbach J, Figueiredo HC, Miyoshi A, Tauch A, Silva A, Azevedo V.

J Biotechnol. 2016 Aug 20;232:2-11. doi: 10.1016/j.jbiotec.2015.09.008. Epub 2015 Sep 12.

45.

MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes.

Mariano DC, Pereira FL, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA.

Bioinformation. 2015 Jun 30;11(6):276-9. doi: 10.6026/97320630011276. eCollection 2015.

46.

Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of potential core therapeutic targets.

Ali A, Naz A, Soares SC, Bakhtiar M, Tiwari S, Hassan SS, Hanan F, Ramos R, Pereira U, Barh D, Figueiredo HC, Ussery DW, Miyoshi A, Silva A, Azevedo V.

Biomed Res Int. 2015;2015:139580. doi: 10.1155/2015/139580. Epub 2015 Jan 29.

47.

Complete Genome Sequences of Fish Pathogenic Weissella ceti Strains WS74 and WS105.

Figueiredo HC, Leal CA, Dorella FA, Carvalho AF, Soares SC, Pereira FL, Azevedo VA.

Genome Announc. 2014 Oct 16;2(5). pii: e01014-14. doi: 10.1128/genomeA.01014-14.

48.

Genome Sequence of Lactococcus lactis subsp. lactis NCDO 2118, a GABA-Producing Strain.

Oliveira LC, Saraiva TD, Soares SC, Ramos RT, Sá PH, Carneiro AR, Miranda F, Freire M, Renan W, Júnior AF, Santos AR, Pinto AC, Souza BM, Castro CP, Diniz CA, Rocha CS, Mariano DC, de Aguiar EL, Folador EL, Barbosa EG, Aburjaile FF, Gonçalves LA, Guimarães LC, Azevedo M, Agresti PC, Silva RF, Tiwari S, Almeida SS, Hassan SS, Pereira VB, Abreu VA, Pereira UP, Dorella FA, Carvalho AF, Pereira FL, Leal CA, Figueiredo HC, Silva A, Miyoshi A, Azevedo V.

Genome Announc. 2014 Oct 2;2(5). pii: e00980-14. doi: 10.1128/genomeA.00980-14.

49.

Whole-Genome Sequence of Weissella ceti Strain WS08, Isolated from Diseased Rainbow Trout in Brazil.

Figueiredo HC, Leal G, Pereira FL, Soares SC, Dorella FA, Carvalho AF, Pereira UP, Azevedo VA.

Genome Announc. 2014 Aug 21;2(4). pii: e00851-14. doi: 10.1128/genomeA.00851-14.

50.

Outbreaks and genetic diversity of Francisella noatunensis subsp orientalis isolated from farm-raised Nile tilapia (Oreochromis niloticus) in Brazil.

Leal CA, Tavares GC, Figueiredo HC.

Genet Mol Res. 2014 Jul 25;13(3):5704-12. doi: 10.4238/2014.July.25.26.

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