Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 170

1.

Unlinked rRNA genes are widespread among bacteria and archaea.

Brewer TE, Albertsen M, Edwards A, Kirkegaard RH, Rocha EPC, Fierer N.

ISME J. 2019 Nov 11. doi: 10.1038/s41396-019-0552-3. [Epub ahead of print]

PMID:
31712737
2.

The Future of Environmental DNA in Forensic Science.

Allwood JS, Fierer N, Dunn RR.

Appl Environ Microbiol. 2019 Nov 8. pii: AEM.01504-19. doi: 10.1128/AEM.01504-19. [Epub ahead of print] Review.

PMID:
31704676
3.

Earthworms' place on Earth.

Fierer N.

Science. 2019 Oct 25;366(6464):425-426. doi: 10.1126/science.aaz5670. No abstract available.

PMID:
31649184
4.

Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons.

Brewer TE, Aronson EL, Arogyaswamy K, Billings SA, Botthoff JK, Campbell AN, Dove NC, Fairbanks D, Gallery RE, Hart SC, Kaye J, King G, Logan G, Lohse KA, Maltz MR, Mayorga E, O'Neill C, Owens SM, Packman A, Pett-Ridge J, Plante AF, Richter DD, Silver WL, Yang WH, Fierer N.

MBio. 2019 Oct 1;10(5). pii: e01318-19. doi: 10.1128/mBio.01318-19.

5.

Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient.

Nottingham AT, Whitaker J, Ostle NJ, Bardgett RD, McNamara NP, Fierer N, Salinas N, Ccahuana AJQ, Turner BL, Meir P.

Ecol Lett. 2019 Nov;22(11):1889-1899. doi: 10.1111/ele.13379. Epub 2019 Sep 6.

PMID:
31489760
6.

High proportions of bacteria and archaea across most biomes remain uncultured.

Steen AD, Crits-Christoph A, Carini P, DeAngelis KM, Fierer N, Lloyd KG, Cameron Thrash J.

ISME J. 2019 Dec;13(12):3126-3130. doi: 10.1038/s41396-019-0484-y. Epub 2019 Aug 6.

7.

Global ecological predictors of the soil priming effect.

Bastida F, García C, Fierer N, Eldridge DJ, Bowker MA, Abades S, Alfaro FD, Asefaw Berhe A, Cutler NA, Gallardo A, García-Velázquez L, Hart SC, Hayes PE, Hernández T, Hseu ZY, Jehmlich N, Kirchmair M, Lambers H, Neuhauser S, Peña-Ramírez VM, Pérez CA, Reed SC, Santos F, Siebe C, Sullivan BW, Trivedi P, Vera A, Williams MA, Luis Moreno J, Delgado-Baquerizo M.

Nat Commun. 2019 Aug 2;10(1):3481. doi: 10.1038/s41467-019-11472-7.

8.

A Global Survey of Mycobacterial Diversity in Soil.

Walsh CM, Gebert MJ, Delgado-Baquerizo M, Maestre FT, Fierer N.

Appl Environ Microbiol. 2019 Aug 14;85(17). pii: e01180-19. doi: 10.1128/AEM.01180-19. Print 2019 Sep 1.

PMID:
31253672
9.

Metagenomic analyses reveal previously unrecognized variation in the diets of sympatric Old World monkey species.

Lyke MM, Di Fiore A, Fierer N, Madden AA, Lambert JE.

PLoS One. 2019 Jun 26;14(6):e0218245. doi: 10.1371/journal.pone.0218245. eCollection 2019.

10.

Microbial Dynamics of Biosand Filters and Contributions of the Microbial Food Web to Effective Treatment of Wastewater-Impacted Water Sources.

Webster TM, Fierer N.

Appl Environ Microbiol. 2019 Aug 14;85(17). pii: e01142-19. doi: 10.1128/AEM.01142-19. Print 2019 Sep 1.

PMID:
31227556
11.

Not all animals need a microbiome.

Hammer TJ, Sanders JG, Fierer N.

FEMS Microbiol Lett. 2019 May 1;366(10). pii: fnz117. doi: 10.1093/femsle/fnz117.

PMID:
31132110
12.

DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions.

Zinger L, Bonin A, Alsos IG, Bálint M, Bik H, Boyer F, Chariton AA, Creer S, Coissac E, Deagle BE, De Barba M, Dickie IA, Dumbrell AJ, Ficetola GF, Fierer N, Fumagalli L, Gilbert MTP, Jarman S, Jumpponen A, Kauserud H, Orlando L, Pansu J, Pawlowski J, Tedersoo L, Thomsen PF, Willerslev E, Taberlet P.

Mol Ecol. 2019 Apr;28(8):1857-1862. doi: 10.1111/mec.15060. Epub 2019 Apr 29. No abstract available.

13.

Changes in belowground biodiversity during ecosystem development.

Delgado-Baquerizo M, Bardgett RD, Vitousek PM, Maestre FT, Williams MA, Eldridge DJ, Lambers H, Neuhauser S, Gallardo A, García-Velázquez L, Sala OE, Abades SR, Alfaro FD, Berhe AA, Bowker MA, Currier CM, Cutler NA, Hart SC, Hayes PE, Hseu ZY, Kirchmair M, Peña-Ramírez VM, Pérez CA, Reed SC, Santos F, Siebe C, Sullivan BW, Weber-Grullon L, Fierer N.

Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):6891-6896. doi: 10.1073/pnas.1818400116. Epub 2019 Mar 15.

14.

A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria.

Choudoir M, Rossabi S, Gebert M, Helmig D, Fierer N.

mSystems. 2019 Mar 5;4(2). pii: e00295-18. doi: 10.1128/mSystems.00295-18. eCollection 2019 Mar-Apr.

15.

Cross-biome patterns in soil microbial respiration predictable from evolutionary theory on thermal adaptation.

Bradford MA, McCulley RL, Crowther TW, Oldfield EE, Wood SA, Fierer N.

Nat Ecol Evol. 2019 Jan 14;3(2):223-231. doi: 10.1038/s41559-018-0771-4.

PMID:
30643243
16.

Fungal diversity regulates plant-soil feedbacks in temperate grassland.

Semchenko M, Leff JW, Lozano YM, Saar S, Davison J, Wilkinson A, Jackson BG, Pritchard WJ, De Long JR, Oakley S, Mason KE, Ostle NJ, Baggs EM, Johnson D, Fierer N, Bardgett RD.

Sci Adv. 2018 Nov 28;4(11):eaau4578. doi: 10.1126/sciadv.aau4578. eCollection 2018 Nov.

17.

Linking bacterial community composition to soil salinity along environmental gradients.

Rath KM, Fierer N, Murphy DV, Rousk J.

ISME J. 2019 Mar;13(3):836-846. doi: 10.1038/s41396-018-0313-8. Epub 2018 Nov 16.

18.

Ecological Analyses of Mycobacteria in Showerhead Biofilms and Their Relevance to Human Health.

Gebert MJ, Delgado-Baquerizo M, Oliverio AM, Webster TM, Nichols LM, Honda JR, Chan ED, Adjemian J, Dunn RR, Fierer N.

MBio. 2018 Oct 30;9(5). pii: e01614-18. doi: 10.1128/mBio.01614-18.

19.

Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes.

Ladau J, Shi Y, Jing X, He JS, Chen L, Lin X, Fierer N, Gilbert JA, Pollard KS, Chu H.

mSystems. 2018 Oct 23;3(5). pii: e00167-18. doi: 10.1128/mSystems.00167-18. eCollection 2018 Sep-Oct.

20.

Limited ecosystem recovery from simulated chronic nitrogen deposition.

Bowman WD, Ayyad A, Bueno de Mesquita CP, Fierer N, Potter TS, Sternagel S.

Ecol Appl. 2018 Oct;28(7):1762-1772. doi: 10.1002/eap.1783. Epub 2018 Sep 4.

PMID:
30179279
21.

Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes.

Nottingham AT, Fierer N, Turner BL, Whitaker J, Ostle NJ, McNamara NP, Bardgett RD, Leff JW, Salinas N, Silman MR, Kruuk LEB, Meir P.

Ecology. 2018 Nov;99(11):2455-2466. doi: 10.1002/ecy.2482. Epub 2018 Oct 26.

22.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
23.

Novel bacterial lineages associated with boreal moss species.

Holland-Moritz H, Stuart J, Lewis LR, Miller S, Mack MC, McDaniel SF, Fierer N.

Environ Microbiol. 2018 Jul;20(7):2625-2638. doi: 10.1111/1462-2920.14288. Epub 2018 Aug 22.

PMID:
29901277
24.

Global gaps in soil biodiversity data.

Cameron EK, Martins IS, Lavelle P, Mathieu J, Tedersoo L, Gottschall F, Guerra CA, Hines J, Patoine G, Siebert J, Winter M, Cesarz S, Delgado-Baquerizo M, Ferlian O, Fierer N, Kreft H, Lovejoy TE, Montanarella L, Orgiazzi A, Pereira HM, Phillips HRP, Settele J, Wall DH, Eisenhauer N.

Nat Ecol Evol. 2018 Jul;2(7):1042-1043. doi: 10.1038/s41559-018-0573-8. No abstract available.

25.

The ecology and diversity of microbial eukaryotes in geothermal springs.

Oliverio AM, Power JF, Washburne A, Cary SC, Stott MB, Fierer N.

ISME J. 2018 Aug;12(8):1918-1928. doi: 10.1038/s41396-018-0104-2. Epub 2018 Apr 16.

26.

Near-Complete Genome Sequence of a Novel Single-Stranded RNA Virus Discovered in Indoor Air.

Rosario K, Fierer N, Breitbart M.

Genome Announc. 2018 Mar 22;6(12). pii: e00198-18. doi: 10.1128/genomeA.00198-18.

27.

Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits.

Leff JW, Bardgett RD, Wilkinson A, Jackson BG, Pritchard WJ, De Long JR, Oakley S, Mason KE, Ostle NJ, Johnson D, Baggs EM, Fierer N.

ISME J. 2018 Jun;12(7):1794-1805. doi: 10.1038/s41396-018-0089-x. Epub 2018 Mar 9.

28.

Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession.

Ortiz-Álvarez R, Fierer N, de Los Ríos A, Casamayor EO, Barberán A.

ISME J. 2018 Jun;12(7):1658-1667. doi: 10.1038/s41396-018-0076-2. Epub 2018 Feb 20.

29.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

30.

A global atlas of the dominant bacteria found in soil.

Delgado-Baquerizo M, Oliverio AM, Brewer TE, Benavent-González A, Eldridge DJ, Bardgett RD, Maestre FT, Singh BK, Fierer N.

Science. 2018 Jan 19;359(6373):320-325. doi: 10.1126/science.aap9516.

PMID:
29348236
31.

Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa).

Robeson MS 2nd, Khanipov K, Golovko G, Wisely SM, White MD, Bodenchuck M, Smyser TJ, Fofanov Y, Fierer N, Piaggio AJ.

Ecol Evol. 2017 Nov 26;8(1):185-196. doi: 10.1002/ece3.3638. eCollection 2018 Jan.

32.

Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing.

Rosario K, Fierer N, Miller S, Luongo J, Breitbart M.

Environ Sci Technol. 2018 Feb 6;52(3):1014-1027. doi: 10.1021/acs.est.7b04203. Epub 2018 Jan 23.

PMID:
29298386
33.

Tales from the tomb: the microbial ecology of exposed rock surfaces.

Brewer TE, Fierer N.

Environ Microbiol. 2018 Mar;20(3):958-970. doi: 10.1111/1462-2920.14024. Epub 2017 Dec 29.

PMID:
29235707
34.

Variation in range size and dispersal capabilities of microbial taxa.

Choudoir MJ, Barberán A, Menninger HL, Dunn RR, Fierer N.

Ecology. 2018 Feb;99(2):322-334. doi: 10.1002/ecy.2094. Epub 2018 Jan 3.

PMID:
29160898
35.

A communal catalogue reveals Earth's multiscale microbial diversity.

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium.

Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1.

36.

Palaeoclimate explains a unique proportion of the global variation in soil bacterial communities.

Delgado-Baquerizo M, Bissett A, Eldridge DJ, Maestre FT, He JZ, Wang JT, Hamonts K, Liu YR, Singh BK, Fierer N.

Nat Ecol Evol. 2017 Sep;1(9):1339-1347. doi: 10.1038/s41559-017-0259-7. Epub 2017 Aug 7.

PMID:
29046544
37.

Caterpillars lack a resident gut microbiome.

Hammer TJ, Janzen DH, Hallwachs W, Jaffe SP, Fierer N.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):9641-9646. doi: 10.1073/pnas.1707186114. Epub 2017 Aug 22.

38.

Embracing the unknown: disentangling the complexities of the soil microbiome.

Fierer N.

Nat Rev Microbiol. 2017 Oct;15(10):579-590. doi: 10.1038/nrmicro.2017.87. Epub 2017 Aug 21. Review.

PMID:
28824177
39.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893. Erratum in: Nat Biotechnol. 2018 Feb 6;36(2):196. Nat Biotechnol. 2018 Jul 6;36(7):660.

40.

Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information.

Barberán A, Caceres Velazquez H, Jones S, Fierer N.

mSphere. 2017 Aug 2;2(4). pii: e00237-17. doi: 10.1128/mSphere.00237-17. eCollection 2017 Jul-Aug.

41.

Following Rapoport's Rule: the geographic range and genome size of bacterial taxa decline at warmer latitudes.

Lear G, Lau K, Perchec AM, Buckley HL, Case BS, Neale M, Fierer N, Leff JW, Handley KM, Lewis G.

Environ Microbiol. 2017 Aug;19(8):3152-3162. doi: 10.1111/1462-2920.13797. Epub 2017 Jun 27.

PMID:
28504344
42.

The emerging contribution of social wasps to grape rot disease ecology.

Madden AA, Boyden SD, Soriano JN, Corey TB, Leff JW, Fierer N, Starks PT.

PeerJ. 2017 Apr 26;5:e3223. doi: 10.7717/peerj.3223. eCollection 2017.

43.

Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome.

Zapka C, Leff J, Henley J, Tittl J, De Nardo E, Butler M, Griggs R, Fierer N, Edmonds-Wilson S.

MBio. 2017 Mar 28;8(2). pii: e00093-17. doi: 10.1128/mBio.00093-17.

44.

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets.

Washburne AD, Silverman JD, Leff JW, Bennett DJ, Darcy JL, Mukherjee S, Fierer N, David LA.

PeerJ. 2017 Feb 9;5:e2969. doi: 10.7717/peerj.2969. eCollection 2017.

45.

Geological and Geochemical Controls on Subsurface Microbial Life in the Samail Ophiolite, Oman.

Rempfert KR, Miller HM, Bompard N, Nothaft D, Matter JM, Kelemen P, Fierer N, Templeton AS.

Front Microbiol. 2017 Feb 7;8:56. doi: 10.3389/fmicb.2017.00056. eCollection 2017.

46.

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity.

Carini P, Marsden PJ, Leff JW, Morgan EE, Strickland MS, Fierer N.

Nat Microbiol. 2016 Dec 19;2:16242. doi: 10.1038/nmicrobiol.2016.242.

PMID:
27991881
47.

Identifying the microbial taxa that consistently respond to soil warming across time and space.

Oliverio AM, Bradford MA, Fierer N.

Glob Chang Biol. 2017 May;23(5):2117-2129. doi: 10.1111/gcb.13557. Epub 2016 Nov 28.

PMID:
27891711
48.

Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus.

Leff JW, Lynch RC, Kane NC, Fierer N.

New Phytol. 2017 Apr;214(1):412-423. doi: 10.1111/nph.14323. Epub 2016 Nov 23.

49.

The diversity of arthropods in homes across the United States as determined by environmental DNA analyses.

Madden AA, Barberán A, Bertone MA, Menninger HL, Dunn RR, Fierer N.

Mol Ecol. 2016 Dec;25(24):6214-6224. doi: 10.1111/mec.13900. Epub 2016 Nov 28.

PMID:
27801965
50.

Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'.

Brewer TE, Handley KM, Carini P, Gilbert JA, Fierer N.

Nat Microbiol. 2016 Oct 31;2:16198. doi: 10.1038/nmicrobiol.2016.198.

PMID:
27798560

Supplemental Content

Loading ...
Support Center