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Items: 1 to 50 of 158

1.

Changes in belowground biodiversity during ecosystem development.

Delgado-Baquerizo M, Bardgett RD, Vitousek PM, Maestre FT, Williams MA, Eldridge DJ, Lambers H, Neuhauser S, Gallardo A, García-Velázquez L, Sala OE, Abades SR, Alfaro FD, Berhe AA, Bowker MA, Currier CM, Cutler NA, Hart SC, Hayes PE, Hseu ZY, Kirchmair M, Peña-Ramírez VM, Pérez CA, Reed SC, Santos F, Siebe C, Sullivan BW, Weber-Grullon L, Fierer N.

Proc Natl Acad Sci U S A. 2019 Mar 15. pii: 201818400. doi: 10.1073/pnas.1818400116. [Epub ahead of print]

PMID:
30877251
2.

A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria.

Choudoir M, Rossabi S, Gebert M, Helmig D, Fierer N.

mSystems. 2019 Mar 5;4(2). pii: e00295-18. doi: 10.1128/mSystems.00295-18. eCollection 2019 Mar-Apr.

3.

Cross-biome patterns in soil microbial respiration predictable from evolutionary theory on thermal adaptation.

Bradford MA, McCulley RL, Crowther TW, Oldfield EE, Wood SA, Fierer N.

Nat Ecol Evol. 2019 Feb;3(2):223-231. doi: 10.1038/s41559-018-0771-4. Epub 2019 Jan 14.

PMID:
30643243
4.

Fungal diversity regulates plant-soil feedbacks in temperate grassland.

Semchenko M, Leff JW, Lozano YM, Saar S, Davison J, Wilkinson A, Jackson BG, Pritchard WJ, De Long JR, Oakley S, Mason KE, Ostle NJ, Baggs EM, Johnson D, Fierer N, Bardgett RD.

Sci Adv. 2018 Nov 28;4(11):eaau4578. doi: 10.1126/sciadv.aau4578. eCollection 2018 Nov.

5.

Linking bacterial community composition to soil salinity along environmental gradients.

Rath KM, Fierer N, Murphy DV, Rousk J.

ISME J. 2019 Mar;13(3):836-846. doi: 10.1038/s41396-018-0313-8. Epub 2018 Nov 16.

PMID:
30446737
6.

Ecological Analyses of Mycobacteria in Showerhead Biofilms and Their Relevance to Human Health.

Gebert MJ, Delgado-Baquerizo M, Oliverio AM, Webster TM, Nichols LM, Honda JR, Chan ED, Adjemian J, Dunn RR, Fierer N.

MBio. 2018 Oct 30;9(5). pii: e01614-18. doi: 10.1128/mBio.01614-18.

7.

Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes.

Ladau J, Shi Y, Jing X, He JS, Chen L, Lin X, Fierer N, Gilbert JA, Pollard KS, Chu H.

mSystems. 2018 Oct 23;3(5). pii: e00167-18. doi: 10.1128/mSystems.00167-18. eCollection 2018 Sep-Oct.

8.

Limited ecosystem recovery from simulated chronic nitrogen deposition.

Bowman WD, Ayyad A, Bueno de Mesquita CP, Fierer N, Potter TS, Sternagel S.

Ecol Appl. 2018 Oct;28(7):1762-1772. doi: 10.1002/eap.1783. Epub 2018 Sep 4.

PMID:
30179279
9.

Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes.

Nottingham AT, Fierer N, Turner BL, Whitaker J, Ostle NJ, McNamara NP, Bardgett RD, Leff JW, Salinas N, Silman MR, Kruuk LEB, Meir P.

Ecology. 2018 Nov;99(11):2455-2466. doi: 10.1002/ecy.2482. Epub 2018 Oct 26.

PMID:
30076592
10.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
11.

Novel bacterial lineages associated with boreal moss species.

Holland-Moritz H, Stuart J, Lewis LR, Miller S, Mack MC, McDaniel SF, Fierer N.

Environ Microbiol. 2018 Jul;20(7):2625-2638. doi: 10.1111/1462-2920.14288. Epub 2018 Aug 22.

PMID:
29901277
12.

Global gaps in soil biodiversity data.

Cameron EK, Martins IS, Lavelle P, Mathieu J, Tedersoo L, Gottschall F, Guerra CA, Hines J, Patoine G, Siebert J, Winter M, Cesarz S, Delgado-Baquerizo M, Ferlian O, Fierer N, Kreft H, Lovejoy TE, Montanarella L, Orgiazzi A, Pereira HM, Phillips HRP, Settele J, Wall DH, Eisenhauer N.

Nat Ecol Evol. 2018 Jul;2(7):1042-1043. doi: 10.1038/s41559-018-0573-8. No abstract available.

13.

The ecology and diversity of microbial eukaryotes in geothermal springs.

Oliverio AM, Power JF, Washburne A, Cary SC, Stott MB, Fierer N.

ISME J. 2018 Aug;12(8):1918-1928. doi: 10.1038/s41396-018-0104-2. Epub 2018 Apr 16.

PMID:
29662145
14.

Near-Complete Genome Sequence of a Novel Single-Stranded RNA Virus Discovered in Indoor Air.

Rosario K, Fierer N, Breitbart M.

Genome Announc. 2018 Mar 22;6(12). pii: e00198-18. doi: 10.1128/genomeA.00198-18.

15.

Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits.

Leff JW, Bardgett RD, Wilkinson A, Jackson BG, Pritchard WJ, De Long JR, Oakley S, Mason KE, Ostle NJ, Johnson D, Baggs EM, Fierer N.

ISME J. 2018 Jun;12(7):1794-1805. doi: 10.1038/s41396-018-0089-x. Epub 2018 Mar 9.

16.

Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession.

Ortiz-Álvarez R, Fierer N, de Los Ríos A, Casamayor EO, Barberán A.

ISME J. 2018 Jun;12(7):1658-1667. doi: 10.1038/s41396-018-0076-2. Epub 2018 Feb 20.

PMID:
29463893
17.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

18.

A global atlas of the dominant bacteria found in soil.

Delgado-Baquerizo M, Oliverio AM, Brewer TE, Benavent-González A, Eldridge DJ, Bardgett RD, Maestre FT, Singh BK, Fierer N.

Science. 2018 Jan 19;359(6373):320-325. doi: 10.1126/science.aap9516.

PMID:
29348236
19.

Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa).

Robeson MS 2nd, Khanipov K, Golovko G, Wisely SM, White MD, Bodenchuck M, Smyser TJ, Fofanov Y, Fierer N, Piaggio AJ.

Ecol Evol. 2017 Nov 26;8(1):185-196. doi: 10.1002/ece3.3638. eCollection 2018 Jan.

20.

Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing.

Rosario K, Fierer N, Miller S, Luongo J, Breitbart M.

Environ Sci Technol. 2018 Feb 6;52(3):1014-1027. doi: 10.1021/acs.est.7b04203. Epub 2018 Jan 23.

PMID:
29298386
21.

Tales from the tomb: the microbial ecology of exposed rock surfaces.

Brewer TE, Fierer N.

Environ Microbiol. 2018 Mar;20(3):958-970. doi: 10.1111/1462-2920.14024. Epub 2017 Dec 29.

PMID:
29235707
22.

Variation in range size and dispersal capabilities of microbial taxa.

Choudoir MJ, Barberán A, Menninger HL, Dunn RR, Fierer N.

Ecology. 2018 Feb;99(2):322-334. doi: 10.1002/ecy.2094. Epub 2018 Jan 3.

PMID:
29160898
23.

A communal catalogue reveals Earth's multiscale microbial diversity.

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium.

Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1.

24.

Palaeoclimate explains a unique proportion of the global variation in soil bacterial communities.

Delgado-Baquerizo M, Bissett A, Eldridge DJ, Maestre FT, He JZ, Wang JT, Hamonts K, Liu YR, Singh BK, Fierer N.

Nat Ecol Evol. 2017 Sep;1(9):1339-1347. doi: 10.1038/s41559-017-0259-7. Epub 2017 Aug 7.

PMID:
29046544
25.

Caterpillars lack a resident gut microbiome.

Hammer TJ, Janzen DH, Hallwachs W, Jaffe SP, Fierer N.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):9641-9646. doi: 10.1073/pnas.1707186114. Epub 2017 Aug 22.

26.

Embracing the unknown: disentangling the complexities of the soil microbiome.

Fierer N.

Nat Rev Microbiol. 2017 Oct;15(10):579-590. doi: 10.1038/nrmicro.2017.87. Epub 2017 Aug 21. Review.

PMID:
28824177
27.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893.

PMID:
28787424
28.

Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information.

Barberán A, Caceres Velazquez H, Jones S, Fierer N.

mSphere. 2017 Aug 2;2(4). pii: e00237-17. doi: 10.1128/mSphere.00237-17. eCollection 2017 Jul-Aug.

29.

Following Rapoport's Rule: the geographic range and genome size of bacterial taxa decline at warmer latitudes.

Lear G, Lau K, Perchec AM, Buckley HL, Case BS, Neale M, Fierer N, Leff JW, Handley KM, Lewis G.

Environ Microbiol. 2017 Aug;19(8):3152-3162. doi: 10.1111/1462-2920.13797. Epub 2017 Jun 27.

PMID:
28504344
30.

The emerging contribution of social wasps to grape rot disease ecology.

Madden AA, Boyden SD, Soriano JN, Corey TB, Leff JW, Fierer N, Starks PT.

PeerJ. 2017 Apr 26;5:e3223. doi: 10.7717/peerj.3223. eCollection 2017.

31.

Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome.

Zapka C, Leff J, Henley J, Tittl J, De Nardo E, Butler M, Griggs R, Fierer N, Edmonds-Wilson S.

MBio. 2017 Mar 28;8(2). pii: e00093-17. doi: 10.1128/mBio.00093-17.

32.

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets.

Washburne AD, Silverman JD, Leff JW, Bennett DJ, Darcy JL, Mukherjee S, Fierer N, David LA.

PeerJ. 2017 Feb 9;5:e2969. doi: 10.7717/peerj.2969. eCollection 2017.

33.

Geological and Geochemical Controls on Subsurface Microbial Life in the Samail Ophiolite, Oman.

Rempfert KR, Miller HM, Bompard N, Nothaft D, Matter JM, Kelemen P, Fierer N, Templeton AS.

Front Microbiol. 2017 Feb 7;8:56. doi: 10.3389/fmicb.2017.00056. eCollection 2017.

34.

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity.

Carini P, Marsden PJ, Leff JW, Morgan EE, Strickland MS, Fierer N.

Nat Microbiol. 2016 Dec 19;2:16242. doi: 10.1038/nmicrobiol.2016.242.

PMID:
27991881
35.

Identifying the microbial taxa that consistently respond to soil warming across time and space.

Oliverio AM, Bradford MA, Fierer N.

Glob Chang Biol. 2017 May;23(5):2117-2129. doi: 10.1111/gcb.13557. Epub 2016 Nov 28.

PMID:
27891711
36.

Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus.

Leff JW, Lynch RC, Kane NC, Fierer N.

New Phytol. 2017 Apr;214(1):412-423. doi: 10.1111/nph.14323. Epub 2016 Nov 23.

37.

The diversity of arthropods in homes across the United States as determined by environmental DNA analyses.

Madden AA, Barberán A, Bertone MA, Menninger HL, Dunn RR, Fierer N.

Mol Ecol. 2016 Dec;25(24):6214-6224. doi: 10.1111/mec.13900. Epub 2016 Nov 28.

PMID:
27801965
38.

Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'.

Brewer TE, Handley KM, Carini P, Gilbert JA, Fierer N.

Nat Microbiol. 2016 Oct 31;2:16198. doi: 10.1038/nmicrobiol.2016.198.

PMID:
27798560
39.

High temporal variability in airborne bacterial diversity and abundance inside single-family residences.

Emerson JB, Keady PB, Clements N, Morgan EE, Awerbuch J, Miller SL, Fierer N.

Indoor Air. 2017 May;27(3):576-586. doi: 10.1111/ina.12347. Epub 2016 Oct 31.

PMID:
27743387
40.

Environmental Drivers of Differences in Microbial Community Structure in Crude Oil Reservoirs across a Methanogenic Gradient.

Shelton JL, Akob DM, McIntosh JC, Fierer N, Spear JR, Warwick PD, McCray JE.

Front Microbiol. 2016 Sep 28;7:1535. eCollection 2016.

41.

Associations between an Invasive Plant (Taeniatherum caput-medusae, Medusahead) and Soil Microbial Communities.

Gornish ES, Fierer N, Barberán A.

PLoS One. 2016 Sep 29;11(9):e0163930. doi: 10.1371/journal.pone.0163930. eCollection 2016.

42.

Quantifying human impact on Earth's microbiome.

Pointing SB, Fierer N, Smith GJ, Steinberg PD, Wiedmann M.

Nat Microbiol. 2016 Aug 26;1(9):16145. doi: 10.1038/nmicrobiol.2016.145. No abstract available.

PMID:
27562268
43.

Continental-Scale Patterns Reveal Potential for Warming-Induced Shifts in Cattle Diet.

Craine JM, Angerer JP, Elmore A, Fierer N.

PLoS One. 2016 Aug 23;11(8):e0161511. doi: 10.1371/journal.pone.0161511. eCollection 2016.

44.

Treating cattle with antibiotics affects greenhouse gas emissions, and microbiota in dung and dung beetles.

Hammer TJ, Fierer N, Hardwick B, Simojoki A, Slade E, Taponen J, Viljanen H, Roslin T.

Proc Biol Sci. 2016 May 25;283(1831). pii: 20160150. doi: 10.1098/rspb.2016.0150.

45.

Microbes Should Be Central to Ecological Education and Outreach.

Barberán A, Hammer TJ, Madden AA, Fierer N.

J Microbiol Biol Educ. 2016 Mar 1;17(1):23-8. doi: 10.1128/jmbe.v17i1.984. eCollection 2016 Mar.

46.

Microbial analyses of airborne dust collected from dormitory rooms predict the sex of occupants.

Luongo JC, Barberán A, Hacker-Cary R, Morgan EE, Miller SL, Fierer N.

Indoor Air. 2017 Mar;27(2):338-344. doi: 10.1111/ina.12302. Epub 2016 Apr 16.

PMID:
27018492
47.

Infection with a Shoot-Specific Fungal Endophyte (Epichloë) Alters Tall Fescue Soil Microbial Communities.

Rojas X, Guo J, Leff JW, McNear DH Jr, Fierer N, McCulley RL.

Microb Ecol. 2016 Jul;72(1):197-206. doi: 10.1007/s00248-016-0750-8. Epub 2016 Mar 18.

PMID:
26992401
48.

Lambda Interferon Restructures the Nasal Microbiome and Increases Susceptibility to Staphylococcus aureus Superinfection.

Planet PJ, Parker D, Cohen TS, Smith H, Leon JD, Ryan C, Hammer TJ, Fierer N, Chen EI, Prince AS.

MBio. 2016 Feb 9;7(1):e01939-15. doi: 10.1128/mBio.01939-15.

49.

Climatic warming and the future of bison as grazers.

Craine JM, Towne EG, Miller M, Fierer N.

Sci Rep. 2015 Nov 16;5:16738. doi: 10.1038/srep16738.

50.

Seasonal Shifts in Diet and Gut Microbiota of the American Bison (Bison bison).

Bergmann GT, Craine JM, Robeson MS 2nd, Fierer N.

PLoS One. 2015 Nov 12;10(11):e0142409. doi: 10.1371/journal.pone.0142409. eCollection 2015.

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