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Altered Relationship between Working Memory and Brain Microstructure after Mild Traumatic Brain Injury.

Chung S, Wang X, Fieremans E, Rath JF, Amorapanth P, Foo FA, Morton CJ, Novikov DS, Flanagan SR, Lui YW.

AJNR Am J Neuroradiol. 2019 Sep;40(9):1438-1444. doi: 10.3174/ajnr.A6146. Epub 2019 Aug 1.


MTBI Identification From Diffusion MR Images Using Bag of Adversarial Visual Features.

Minaee S, Wang Y, Aygar A, Chung S, Wang X, Lui YW, Fieremans E, Flanagan S, Rath J.

IEEE Trans Med Imaging. 2019 Mar 18. doi: 10.1109/TMI.2019.2905917. [Epub ahead of print]


Along-axon diameter variation and axonal orientation dispersion revealed with 3D electron microscopy: implications for quantifying brain white matter microstructure with histology and diffusion MRI.

Lee HH, Yaros K, Veraart J, Pathan JL, Liang FX, Kim SG, Novikov DS, Fieremans E.

Brain Struct Funct. 2019 May;224(4):1469-1488. doi: 10.1007/s00429-019-01844-6. Epub 2019 Feb 21.


Characterization of prostate microstructure using water diffusion and NMR relaxation.

Lemberskiy G, Fieremans E, Veraart J, Deng FM, Rosenkrantz AB, Novikov DS.

Front Phys. 2018 Sep;6. pii: 91. doi: 10.3389/fphy.2018.00091. Epub 2018 Sep 25.


Genomic kinship construction to enhance genetic analyses in the human connectome project data.

Kochunov P, Donohue B, Mitchell BD, Ganjgahi H, Adhikari B, Ryan M, Medland SE, Jahanshad N, Thompson PM, Blangero J, Fieremans E, Novikov DS, Marcus D, Van Essen DC, Glahn DC, Elliot Hong L, Nichols TE.

Hum Brain Mapp. 2019 Apr 1;40(5):1677-1688. doi: 10.1002/hbm.24479. Epub 2018 Nov 29.


A Deep Unsupervised Learning Approach Toward MTBI Identification Using Diffusion MRI.

Minaee S, Wang Y, Choromanska A, Chung S, Wang X, Fieremans E, Flanagan S, Rath J, Lui YW.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:1267-1270. doi: 10.1109/EMBC.2018.8512556.


Diffusional Kurtosis along the Corticospinal Tract in Adult Normal Pressure Hydrocephalus.

Ades-Aron B, Yeager S, Miskin N, Fieremans E, George A, Golomb J.

AJNR Am J Neuroradiol. 2018 Dec;39(12):2218-2223. doi: 10.3174/ajnr.A5845. Epub 2018 Nov 1.


Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation.

Novikov DS, Fieremans E, Jespersen SN, Kiselev VG.

NMR Biomed. 2019 Apr;32(4):e3998. doi: 10.1002/nbm.3998. Epub 2018 Oct 15.


On the scaling behavior of water diffusion in human brain white matter.

Veraart J, Fieremans E, Novikov DS.

Neuroimage. 2019 Jan 15;185:379-387. doi: 10.1016/j.neuroimage.2018.09.075. Epub 2018 Oct 4.


A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol.

Adhikari BM, Jahanshad N, Shukla D, Turner J, Grotegerd D, Dannlowski U, Kugel H, Engelen J, Dietsche B, Krug A, Kircher T, Fieremans E, Veraart J, Novikov DS, Boedhoe PSW, van der Werf YD, van den Heuvel OA, Ipser J, Uhlmann A, Stein DJ, Dickie E, Voineskos AN, Malhotra AK, Pizzagalli F, Calhoun VD, Waller L, Veer IM, Walter H, Buchanan RW, Glahn DC, Hong LE, Thompson PM, Kochunov P.

Brain Imaging Behav. 2019 Oct;13(5):1453-1467. doi: 10.1007/s11682-018-9941-x.


Evaluation of the accuracy and precision of the diffusion parameter EStImation with Gibbs and NoisE removal pipeline.

Ades-Aron B, Veraart J, Kochunov P, McGuire S, Sherman P, Kellner E, Novikov DS, Fieremans E.

Neuroimage. 2018 Dec;183:532-543. doi: 10.1016/j.neuroimage.2018.07.066. Epub 2018 Aug 2.


Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline.

Adhikari BM, Jahanshad N, Shukla D, Glahn DC, Blangero J, Fox PT, Reynolds RC, Cox RW, Fieremans E, Veraart J, Novikov DS, Nichols TE, Hong LE, Thompson PM, Kochunov P.

Hum Brain Mapp. 2018 Dec;39(12):4893-4902. doi: 10.1002/hbm.24331. Epub 2018 Jul 27.


Physical and numerical phantoms for the validation of brain microstructural MRI: A cookbook.

Fieremans E, Lee HH.

Neuroimage. 2018 Nov 15;182:39-61. doi: 10.1016/j.neuroimage.2018.06.046. Epub 2018 Jun 18. Review.


Quantifying myofiber integrity using diffusion MRI and random permeable barrier modeling in skeletal muscle growth and Duchenne muscular dystrophy model in mice.

Winters KV, Reynaud O, Novikov DS, Fieremans E, Kim SG.

Magn Reson Med. 2018 Nov;80(5):2094-2108. doi: 10.1002/mrm.27188. Epub 2018 Mar 25.


Rotationally-invariant mapping of scalar and orientational metrics of neuronal microstructure with diffusion MRI.

Novikov DS, Veraart J, Jelescu IO, Fieremans E.

Neuroimage. 2018 Jul 1;174:518-538. doi: 10.1016/j.neuroimage.2018.03.006. Epub 2018 Mar 12.


Working Memory And Brain Tissue Microstructure: White Matter Tract Integrity Based On Multi-Shell Diffusion MRI.

Chung S, Fieremans E, Kucukboyaci NE, Wang X, Morton CJ, Novikov DS, Rath JF, Lui YW.

Sci Rep. 2018 Feb 16;8(1):3175. doi: 10.1038/s41598-018-21428-4.


Observation of structural universality in disordered systems using bulk diffusion measurement.

Papaioannou A, Novikov DS, Fieremans E, Boutis GS.

Phys Rev E. 2017 Dec;96(6-1):061101. doi: 10.1103/PhysRevE.96.061101. Epub 2017 Dec 1.


Miniature pig model of human adolescent brain white matter development.

Ryan MC, Sherman P, Rowland LM, Wijtenburg SA, Acheson A, Fieremans E, Veraart J, Novikov DS, Hong LE, Sladky J, Peralta PD, Kochunov P, McGuire SA.

J Neurosci Methods. 2018 Feb 15;296:99-108. doi: 10.1016/j.jneumeth.2017.12.017. Epub 2017 Dec 24.


What dominates the time dependence of diffusion transverse to axons: Intra- or extra-axonal water?

Lee HH, Fieremans E, Novikov DS.

Neuroimage. 2018 Nov 15;182:500-510. doi: 10.1016/j.neuroimage.2017.12.038. Epub 2017 Dec 16.


White Matter Tract Integrity: An Indicator of Axonal Pathology after Mild Traumatic Brain Injury.

Chung S, Fieremans E, Wang X, Kucukboyaci NE, Morton CJ, Babb J, Amorapanth P, Foo FA, Novikov DS, Flanagan SR, Rath JF, Lui YW.

J Neurotrauma. 2018 Apr 15;35(8):1015-1020. doi: 10.1089/neu.2017.5320.


Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline.

Adhikari BM, Jahanshad N, Shukla D, Glahn DC, Blangero J, Reynolds RC, Cox RW, Fieremans E, Veraart J, Novikov DS, Nichols TE, Hong LE, Thompson PM, Kochunov P.

Pac Symp Biocomput. 2018;23:307-318.


Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies.

Kochunov P, Dickie EW, Viviano JD, Turner J, Kingsley PB, Jahanshad N, Thompson PM, Ryan MC, Fieremans E, Novikov D, Veraart J, Hong EL, Malhotra AK, Buchanan RW, Chavez S, Voineskos AN.

Hum Brain Mapp. 2018 Feb;39(2):1015-1023. doi: 10.1002/hbm.23900. Epub 2017 Nov 27.


Obstructive Sleep Apnea Severity Affects Amyloid Burden in Cognitively Normal Elderly. A Longitudinal Study.

Sharma RA, Varga AW, Bubu OM, Pirraglia E, Kam K, Parekh A, Wohlleber M, Miller MD, Andrade A, Lewis C, Tweardy S, Buj M, Yau PL, Sadda R, Mosconi L, Li Y, Butler T, Glodzik L, Fieremans E, Babb JS, Blennow K, Zetterberg H, Lu SE, Badia SG, Romero S, Rosenzweig I, Gosselin N, Jean-Louis G, Rapoport DM, de Leon MJ, Ayappa I, Osorio RS.

Am J Respir Crit Care Med. 2018 Apr 1;197(7):933-943. doi: 10.1164/rccm.201704-0704OC.


TE dependent Diffusion Imaging (TEdDI) distinguishes between compartmental T2 relaxation times.

Veraart J, Novikov DS, Fieremans E.

Neuroimage. 2018 Nov 15;182:360-369. doi: 10.1016/j.neuroimage.2017.09.030. Epub 2017 Sep 19.


Lipid Metabolism, Abdominal Adiposity, and Cerebral Health in the Amish.

Ryan M, Kochunov P, Rowland LM, Mitchell BD, Wijtenburg SA, Fieremans E, Veraart J, Novikov DS, Du X, Adhikari B, Fisseha F, Bruce H, Chiappelli J, Sampath H, Ament S, O'Connell J, Shuldiner AR, Hong LE.

Obesity (Silver Spring). 2017 Nov;25(11):1876-1880. doi: 10.1002/oby.21946. Epub 2017 Aug 20.


Validation of surface-to-volume ratio measurements derived from oscillating gradient spin echo on a clinical scanner using anisotropic fiber phantoms.

Lemberskiy G, Baete SH, Cloos MA, Novikov DS, Fieremans E.

NMR Biomed. 2017 May;30(5). doi: 10.1002/nbm.3708. Epub 2017 Mar 22.


Time-Dependent Diffusion in Prostate Cancer.

Lemberskiy G, Rosenkrantz AB, Veraart J, Taneja SS, Novikov DS, Fieremans E.

Invest Radiol. 2017 Jul;52(7):405-411. doi: 10.1097/RLI.0000000000000356.


Diffusion-weighted imaging uncovers likely sources of processing-speed deficits in schizophrenia.

Kochunov P, Rowland LM, Fieremans E, Veraart J, Jahanshad N, Eskandar G, Du X, Muellerklein F, Savransky A, Shukla D, Sampath H, Thompson PM, Hong LE.

Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):13504-13509. Epub 2016 Nov 9.


Palliative CT-Guided Cordotomy for Medically Intractable Pain in Patients with Cancer.

Shepherd TM, Hoch MJ, Cohen BA, Bruno MT, Fieremans E, Rosen G, Pacione D, Mogilner AY.

AJNR Am J Neuroradiol. 2017 Feb;38(2):387-390. doi: 10.3174/ajnr.A4981. Epub 2016 Nov 3.


In vivo measurement of membrane permeability and myofiber size in human muscle using time-dependent diffusion tensor imaging and the random permeable barrier model.

Fieremans E, Lemberskiy G, Veraart J, Sigmund EE, Gyftopoulos S, Novikov DS.

NMR Biomed. 2017 Mar;30(3). doi: 10.1002/nbm.3612. Epub 2016 Oct 7.


Denoising of diffusion MRI using random matrix theory.

Veraart J, Novikov DS, Christiaens D, Ades-Aron B, Sijbers J, Fieremans E.

Neuroimage. 2016 Nov 15;142:394-406. doi: 10.1016/j.neuroimage.2016.08.016. Epub 2016 Aug 11.


Quantification of normal-appearing white matter tract integrity in multiple sclerosis: a diffusion kurtosis imaging study.

de Kouchkovsky I, Fieremans E, Fleysher L, Herbert J, Grossman RI, Inglese M.

J Neurol. 2016 Jun;263(6):1146-55. doi: 10.1007/s00415-016-8118-z. Epub 2016 Apr 19.


Clearance systems in the brain--implications for Alzheimer diseaser.

Tarasoff-Conway JM, Carare RO, Osorio RS, Glodzik L, Butler T, Fieremans E, Axel L, Rusinek H, Nicholson C, Zlokovic BV, Frangione B, Blennow K, Ménard J, Zetterberg H, Wisniewski T, de Leon MJ.

Nat Rev Neurol. 2016 Apr;12(4):248. doi: 10.1038/nrneurol.2016.36. Epub 2016 Mar 29. No abstract available.


In vivo quantification of demyelination and recovery using compartment-specific diffusion MRI metrics validated by electron microscopy.

Jelescu IO, Zurek M, Winters KV, Veraart J, Rajaratnam A, Kim NS, Babb JS, Shepherd TM, Novikov DS, Kim SG, Fieremans E.

Neuroimage. 2016 May 15;132:104-114. doi: 10.1016/j.neuroimage.2016.02.004. Epub 2016 Feb 11.


In vivo observation and biophysical interpretation of time-dependent diffusion in human white matter.

Fieremans E, Burcaw LM, Lee HH, Lemberskiy G, Veraart J, Novikov DS.

Neuroimage. 2016 Apr 1;129:414-427. doi: 10.1016/j.neuroimage.2016.01.018. Epub 2016 Jan 20.


Degeneracy in model parameter estimation for multi-compartmental diffusion in neuronal tissue.

Jelescu IO, Veraart J, Fieremans E, Novikov DS.

NMR Biomed. 2016 Jan;29(1):33-47. doi: 10.1002/nbm.3450. Epub 2015 Nov 29.


Diffusion MRI noise mapping using random matrix theory.

Veraart J, Fieremans E, Novikov DS.

Magn Reson Med. 2016 Nov;76(5):1582-1593. doi: 10.1002/mrm.26059. Epub 2015 Nov 24.


Diffusion kurtosis imaging probes cortical alterations and white matter pathology following cuprizone induced demyelination and spontaneous remyelination.

Guglielmetti C, Veraart J, Roelant E, Mai Z, Daans J, Van Audekerke J, Naeyaert M, Vanhoutte G, Delgado Y Palacios R, Praet J, Fieremans E, Ponsaerts P, Sijbers J, Van der Linden A, Verhoye M.

Neuroimage. 2016 Jan 15;125:363-377. doi: 10.1016/j.neuroimage.2015.10.052. Epub 2015 Oct 23.


Gibbs ringing in diffusion MRI.

Veraart J, Fieremans E, Jelescu IO, Knoll F, Novikov DS.

Magn Reson Med. 2016 Jul;76(1):301-14. doi: 10.1002/mrm.25866. Epub 2015 Aug 10.


Clearance systems in the brain-implications for Alzheimer disease.

Tarasoff-Conway JM, Carare RO, Osorio RS, Glodzik L, Butler T, Fieremans E, Axel L, Rusinek H, Nicholson C, Zlokovic BV, Frangione B, Blennow K, Ménard J, Zetterberg H, Wisniewski T, de Leon MJ.

Nat Rev Neurol. 2015 Aug;11(8):457-70. doi: 10.1038/nrneurol.2015.119. Epub 2015 Jul 21. Review. Erratum in: Nat Rev Neurol. 2016 Apr;12(4):248.


N-acetyl-aspartate levels correlate with intra-axonal compartment parameters from diffusion MRI.

Grossman EJ, Kirov II, Gonen O, Novikov DS, Davitz MS, Lui YW, Grossman RI, Inglese M, Fieremans E.

Neuroimage. 2015 Sep;118:334-43. doi: 10.1016/j.neuroimage.2015.05.061. Epub 2015 May 30.


Mesoscopic structure of neuronal tracts from time-dependent diffusion.

Burcaw LM, Fieremans E, Novikov DS.

Neuroimage. 2015 Jul 1;114:18-37. doi: 10.1016/j.neuroimage.2015.03.061. Epub 2015 Mar 30.


Diffusional kurtosis imaging in hydrocephalus.

Serulle Y, Pawar RV, Eubig J, Fieremans E, Kong SE, George IC, Morley C, Babb JS, George AE.

Magn Reson Imaging. 2015 Jun;33(5):531-6. doi: 10.1016/j.mri.2015.02.009. Epub 2015 Feb 14.


One diffusion acquisition and different white matter models: how does microstructure change in human early development based on WMTI and NODDI?

Jelescu IO, Veraart J, Adisetiyo V, Milla SS, Novikov DS, Fieremans E.

Neuroimage. 2015 Feb 15;107:242-256. doi: 10.1016/j.neuroimage.2014.12.009. Epub 2014 Dec 9.


Differentiating shunt-responsive normal pressure hydrocephalus from Alzheimer disease and normal aging: pilot study using automated MRI brain tissue segmentation.

Serulle Y, Rusinek H, Kirov II, Milch H, Fieremans E, Baxter AB, McMenamy J, Jain R, Wisoff J, Golomb J, Gonen O, George AE.

J Neurol. 2014 Oct;261(10):1994-2002. doi: 10.1007/s00415-014-7454-0. Epub 2014 Aug 1.


Multimodal MR imaging of brain iron in attention deficit hyperactivity disorder: a noninvasive biomarker that responds to psychostimulant treatment?

Adisetiyo V, Jensen JH, Tabesh A, Deardorff RL, Fieremans E, Di Martino A, Gray KM, Castellanos FX, Helpern JA.

Radiology. 2014 Aug;272(2):524-32. doi: 10.1148/radiol.14140047. Epub 2014 Jun 17.


Revealing mesoscopic structural universality with diffusion.

Novikov DS, Jensen JH, Helpern JA, Fieremans E.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5088-93. doi: 10.1073/pnas.1316944111. Epub 2014 Mar 24.


Time-dependent diffusion in skeletal muscle with the random permeable barrier model (RPBM): application to normal controls and chronic exertional compartment syndrome patients.

Sigmund EE, Novikov DS, Sui D, Ukpebor O, Baete S, Babb JS, Liu K, Feiweier T, Kwon J, McGorty K, Bencardino J, Fieremans E.

NMR Biomed. 2014 May;27(5):519-28. doi: 10.1002/nbm.3087. Epub 2014 Mar 9.


White matter tract integrity metrics reflect the vulnerability of late-myelinating tracts in Alzheimer's disease.

Benitez A, Fieremans E, Jensen JH, Falangola MF, Tabesh A, Ferris SH, Helpern JA.

Neuroimage Clin. 2013 Nov 9;4:64-71. doi: 10.1016/j.nicl.2013.11.001. eCollection 2014.


Diffusional kurtosis imaging of the developing brain.

Paydar A, Fieremans E, Nwankwo JI, Lazar M, Sheth HD, Adisetiyo V, Helpern JA, Jensen JH, Milla SS.

AJNR Am J Neuroradiol. 2014 Apr;35(4):808-14. doi: 10.3174/ajnr.A3764. Epub 2013 Nov 14.

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