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Items: 31

1.

Exercise and the Gut Microbiome: A Review of the Evidence, Potential Mechanisms, and Implications for Human Health.

Mailing LJ, Allen JM, Buford TW, Fields CJ, Woods JA.

Exerc Sport Sci Rev. 2019 Apr;47(2):75-85. doi: 10.1249/JES.0000000000000183.

PMID:
30883471
2.

Clostridium scindens ATCC 35704: integration of nutritional requirements, the complete genome sequence, and global transcriptional responses to bile acids.

Devendran S, Shrestha R, Alves JMP, Wolf PG, Ly L, Hernandez AG, Méndez-García C, Inboden A, Wiley J, Paul O, Allen A, Springer E, Wright CL, Fields CJ, Daniel SL, Ridlon JM.

Appl Environ Microbiol. 2019 Feb 8. pii: AEM.00052-19. doi: 10.1128/AEM.00052-19. [Epub ahead of print]

PMID:
30737348
3.

Near-infrared fluorescent northern blot.

Miller BR, Wei T, Fields CJ, Sheng P, Xie M.

RNA. 2018 Dec;24(12):1871-1877. doi: 10.1261/rna.068213.118. Epub 2018 Sep 10.

4.

Mosquito microbiota cluster by host sampling location.

Muturi EJ, Lagos-Kutz D, Dunlap C, Ramirez JL, Rooney AP, Hartman GL, Fields CJ, Rendon G, Kim CH.

Parasit Vectors. 2018 Aug 14;11(1):468. doi: 10.1186/s13071-018-3036-9.

5.

Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) Endosymbiont "Candidatus Cardinium hertigii" Strain cHgTN10.

Showmaker KC, Walden KKO, Fields CJ, Lambert KN, Hudson ME.

Genome Announc. 2018 Jun 28;6(26). pii: e00624-18. doi: 10.1128/genomeA.00624-18.

6.

Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243T.

Harris SC, Devendran S, Méndez-García C, Mythen SM, Wright CL, Fields CJ, Hernandez AG, Cann I, Hylemon PB, Ridlon JM.

Gut Microbes. 2018 Nov 2;9(6):523-539. doi: 10.1080/19490976.2018.1458180. Epub 2018 May 24.

PMID:
29617190
7.

Defense against territorial intrusion is associated with DNA methylation changes in the honey bee brain.

Herb BR, Shook MS, Fields CJ, Robinson GE.

BMC Genomics. 2018 Mar 26;19(1):216. doi: 10.1186/s12864-018-4594-0.

8.

A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee.

Avalos A, Pan H, Li C, Acevedo-Gonzalez JP, Rendon G, Fields CJ, Brown PJ, Giray T, Robinson GE, Hudson ME, Zhang G.

Nat Commun. 2017 Nov 16;8(1):1550. doi: 10.1038/s41467-017-01800-0.

9.

The 2017 Bioinformatics Open Source Conference (BOSC).

Harris NL, Cock PJA, Chapman B, Fields CJ, Hokamp K, Lapp H, Munoz-Torres M, Tzovaras BG, Wiencko H.

F1000Res. 2017 Oct 19;6. pii: ISCB Comm J-1858. doi: 10.12688/f1000research.12929.1. eCollection 2017.

10.

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes.

Sun J, Zhang Y, Xu T, Zhang Y, Mu H, Zhang Y, Lan Y, Fields CJ, Hui JHL, Zhang W, Li R, Nong W, Cheung FKM, Qiu JW, Qian PY.

Nat Ecol Evol. 2017 Apr 3;1(5):121. doi: 10.1038/s41559-017-0121.

PMID:
28812709
11.

Whole genome comparative analysis of four Georgian grape cultivars.

Tabidze V, Pipia I, Gogniashvili M, Kunelauri N, Ujmajuridze L, Pirtskhalava M, Vishnepolsky B, Hernandez AG, Fields CJ, Beridze T.

Mol Genet Genomics. 2017 Dec;292(6):1377-1389. doi: 10.1007/s00438-017-1353-x. Epub 2017 Aug 7.

PMID:
28785866
12.

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network.

Jongeneel CV, Achinike-Oduaran O, Adebiyi E, Adebiyi M, Adeyemi S, Akanle B, Aron S, Ashano E, Bendou H, Botha G, Chimusa E, Choudhury A, Donthu R, Drnevich J, Falola O, Fields CJ, Hazelhurst S, Hendry L, Isewon I, Khetani RS, Kumuthini J, Kimuda MP, Magosi L, Mainzer LS, Maslamoney S, Mbiyavanga M, Meintjes A, Mugutso D, Mpangase P, Munthali R, Nembaware V, Ndhlovu A, Odia T, Okafor A, Oladipo O, Panji S, Pillay V, Rendon G, Sengupta D, Mulder N.

PLoS Comput Biol. 2017 Jun 1;13(6):e1005419. doi: 10.1371/journal.pcbi.1005419. eCollection 2017 Jun.

13.

Effect of pesticides on microbial communities in container aquatic habitats.

Muturi EJ, Donthu RK, Fields CJ, Moise IK, Kim CH.

Sci Rep. 2017 Mar 16;7:44565. doi: 10.1038/srep44565.

14.

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

Hirsch CN, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler E, Buell CR, de Leon N, Kaeppler SM, Childs KL, Mikel MA.

Plant Cell. 2016 Nov;28(11):2700-2714. Epub 2016 Nov 1.

15.

The 2016 Bioinformatics Open Source Conference (BOSC).

Harris NL, Cock PJ, Chapman B, Fields CJ, Hokamp K, Lapp H, Muñoz-Torres M, Wiencko H.

F1000Res. 2016 Oct 6;5. pii: ISCB Comm J-2464. eCollection 2016.

16.

Erratum to: Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.

Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Yeoman CJ, Miller ME, Fields CJ, Terrapon N, Le Bourvellec C, Renard CM, Henrissat B, White BA, Mosoni P.

BMC Genomics. 2016 Jun 6;17(1):426. No abstract available.

17.

Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level.

Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Chambon C, Yeoman CJ, Berg Miller ME, Fields CJ, Martens E, Terrapon N, Henrissat B, White BA, Mosoni P.

BMC Genomics. 2016 May 4;17:326. doi: 10.1186/s12864-016-2680-8.

18.

Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.

Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Yeoman CJ, Miller ME, Fields CJ, Terrapon N, Le Bourvellec C, Renard CM, Henrissat B, White BA, Mosoni P.

BMC Genomics. 2016 Feb 27;17:147. doi: 10.1186/s12864-016-2472-1. Erratum in: BMC Genomics. 2016;17:426.

19.

Plasma Exosomal miRNAs in Persons with and without Alzheimer Disease: Altered Expression and Prospects for Biomarkers.

Lugli G, Cohen AM, Bennett DA, Shah RC, Fields CJ, Hernandez AG, Smalheiser NR.

PLoS One. 2015 Oct 1;10(10):e0139233. doi: 10.1371/journal.pone.0139233. eCollection 2015.

20.

Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts.

Chu CC, Zavala JA, Spencer JL, Curzi MJ, Fields CJ, Drnevich J, Siegfried BD, Seufferheld MJ.

Evol Appl. 2015 Aug;8(7):692-704. doi: 10.1111/eva.12278. Epub 2015 Jul 16.

21.

IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata.

Wingfield BD, Ades PK, Al-Naemi FA, Beirn LA, Bihon W, Crouch JA, de Beer ZW, De Vos L, Duong TA, Fields CJ, Fourie G, Kanzi AM, Malapi-Wight M, Pethybridge SJ, Radwan O, Rendon G, Slippers B, Santana QC, Steenkamp ET, Taylor PW, Vaghefi N, van der Merwe NA, Veltri D, Wingfield MJ.

IMA Fungus. 2015 Jun;6(1):233-48. doi: 10.5598/imafungus.2015.06.01.15. Epub 2015 Jun 22.

22.

Glyphosate's impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching.

Doğramacı M, Foley ME, Horvath DP, Hernandez AG, Khetani RS, Fields CJ, Keating KM, Mikel MA, Anderson JV.

BMC Genomics. 2015 May 19;16:395. doi: 10.1186/s12864-015-1627-9.

23.

The Bio-Community Perl toolkit for microbial ecology.

Angly FE, Fields CJ, Tyson GW.

Bioinformatics. 2014 Jul 1;30(13):1926-7. doi: 10.1093/bioinformatics/btu130. Epub 2014 Mar 10.

24.

Physical therapists make accurate and appropriate discharge recommendations for patients who are acutely ill.

Smith BA, Fields CJ, Fernandez N.

Phys Ther. 2010 May;90(5):693-703. doi: 10.2522/ptj.20090164. Epub 2010 Mar 18.

25.

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants.

Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM.

Nucleic Acids Res. 2010 Apr;38(6):1767-71. doi: 10.1093/nar/gkp1137. Epub 2009 Dec 16. Review.

26.

Biogeography of the Sulfolobus islandicus pan-genome.

Reno ML, Held NL, Fields CJ, Burke PV, Whitaker RJ.

Proc Natl Acad Sci U S A. 2009 May 26;106(21):8605-10. doi: 10.1073/pnas.0808945106. Epub 2009 May 12. Erratum in: Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18873.

27.

pyr RNA binding to the Bacillus caldolyticus PyrR attenuation protein - characterization and regulation by uridine and guanosine nucleotides.

Jørgensen CM, Fields CJ, Chander P, Watt D, Burgner JW 2nd, Smith JL, Switzer RL.

FEBS J. 2008 Feb;275(4):655-70. doi: 10.1111/j.1742-4658.2007.06227.x. Epub 2008 Jan 8.

28.
29.

Regulation of pyr gene expression in Mycobacterium smegmatis by PyrR-dependent translational repression.

Fields CJ, Switzer RL.

J Bacteriol. 2007 Sep;189(17):6236-45. Epub 2007 Jun 29.

30.

Recent progress in engineering alpha/beta hydrolase-fold family members.

Qian Z, Fields CJ, Yu Y, Lutz S.

Biotechnol J. 2007 Feb;2(2):192-200. Review.

PMID:
17183507
31.

Structure of the nucleotide complex of PyrR, the pyr attenuation protein from Bacillus caldolyticus, suggests dual regulation by pyrimidine and purine nucleotides.

Chander P, Halbig KM, Miller JK, Fields CJ, Bonner HK, Grabner GK, Switzer RL, Smith JL.

J Bacteriol. 2005 Mar;187(5):1773-82.

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