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Items: 38

1.

Impact of measurement noise, experimental design, and estimation methods on Modular Response Analysis based network reconstruction.

Thomaseth C, Fey D, Santra T, Rukhlenko OS, Radde NE, Kholodenko BN.

Sci Rep. 2018 Nov 1;8(1):16217. doi: 10.1038/s41598-018-34353-3.

2.

Systems biology: old news or new stimulus for biochemistry.

Kolch W, Fey D, Ryan CJ.

Essays Biochem. 2018 Oct 26;62(4):483-486. doi: 10.1042/EBC20180002. Print 2018 Oct 26.

PMID:
30366987
3.

Detection of piscine orthoreoviruses (PRV-1 and PRV-3) in Atlantic salmon and rainbow trout farmed in Germany.

Adamek M, Hellmann J, Flamm A, Teitge F, Vendramin N, Fey D, Riße K, Blakey F, Rimstad E, Steinhagen D.

Transbound Emerg Dis. 2018 Sep 19. doi: 10.1111/tbed.13018. [Epub ahead of print]

PMID:
30230250
4.

Effect of static magnetic field on the hatching success, growth, mortality, and yolk-sac absorption of larval Northern pike Esox lucius.

Fey DP, Greszkiewicz M, Otremba Z, Andrulewicz E.

Sci Total Environ. 2019 Jan 10;647:1239-1244. doi: 10.1016/j.scitotenv.2018.07.427. Epub 2018 Jul 31.

PMID:
30180332
5.

MASTL overexpression promotes chromosome instability and metastasis in breast cancer.

Rogers S, McCloy RA, Parker BL, Gallego-Ortega D, Law AMK, Chin VT, Conway JRW, Fey D, Millar EKA, O'Toole S, Deng N, Swarbrick A, Chastain PD, Cesare AJ, Timpson P, Caldon CE, Croucher DR, James DE, Watkins DN, Burgess A.

Oncogene. 2018 Aug;37(33):4518-4533. doi: 10.1038/s41388-018-0295-z. Epub 2018 May 10.

6.

The extracellular matrix as a key regulator of intracellular signalling networks.

Hastings JF, Skhinas JN, Fey D, Croucher DR, Cox TR.

Br J Pharmacol. 2019 Jan;176(1):82-92. doi: 10.1111/bph.14195. Epub 2018 Apr 19. Review.

PMID:
29510460
7.

Personalized Computational Models as Biomarkers.

Kolch W, Fey D.

J Pers Med. 2017 Sep 1;7(3). pii: E9. doi: 10.3390/jpm7030009.

8.

Performance of objective functions and optimisation procedures for parameter estimation in system biology models.

Degasperi A, Fey D, Kholodenko BN.

NPJ Syst Biol Appl. 2017 Aug 8;3:20. doi: 10.1038/s41540-017-0023-2. eCollection 2017.

9.

Modeling of Receptor Tyrosine Kinase Signaling: Computational and Experimental Protocols.

Fey D, Aksamitiene E, Kiyatkin A, Kholodenko BN.

Methods Mol Biol. 2017;1636:417-453. doi: 10.1007/978-1-4939-7154-1_27.

PMID:
28730495
10.

Wnt signalling is a bi-directional vulnerability of cancer cells.

Duffy DJ, Krstic A, Schwarzl T, Halasz M, Iljin K, Fey D, Haley B, Whilde J, Haapa-Paananen S, Fey V, Fischer M, Westermann F, Henrich KO, Bannert S, Higgins DG, Kolch W.

Oncotarget. 2016 Sep 13;7(37):60310-60331. doi: 10.18632/oncotarget.11203.

11.

The complexities and versatility of the RAS-to-ERK signalling system in normal and cancer cells.

Fey D, Matallanas D, Rauch J, Rukhlenko OS, Kholodenko BN.

Semin Cell Dev Biol. 2016 Oct;58:96-107. doi: 10.1016/j.semcdb.2016.06.011. Epub 2016 Jun 24. Review.

PMID:
27350026
12.

Frequency modulation of ERK activation dynamics rewires cell fate.

Ryu H, Chung M, Dobrzyński M, Fey D, Blum Y, Sik Lee S, Peter M, Kholodenko BN, Li Jeon N, Pertz O.

Mol Syst Biol. 2016 Apr 22;12(4):866. doi: 10.15252/msb.20166982. No abstract available.

13.

PP1 initiates the dephosphorylation of MASTL, triggering mitotic exit and bistability in human cells.

Rogers S, Fey D, McCloy RA, Parker BL, Mitchell NJ, Payne RJ, Daly RJ, James DE, Caldon CE, Watkins DN, Croucher DR, Burgess A.

J Cell Sci. 2016 Apr 1;129(7):1340-54. doi: 10.1242/jcs.179754. Epub 2016 Feb 12.

14.

Signaling pathway models as biomarkers: Patient-specific simulations of JNK activity predict the survival of neuroblastoma patients.

Fey D, Halasz M, Dreidax D, Kennedy SP, Hastings JF, Rauch N, Munoz AG, Pilkington R, Fischer M, Westermann F, Kolch W, Kholodenko BN, Croucher DR.

Sci Signal. 2015 Dec 22;8(408):ra130. doi: 10.1126/scisignal.aab0990.

PMID:
26696630
15.

Integrative omics reveals MYCN as a global suppressor of cellular signalling and enables network-based therapeutic target discovery in neuroblastoma.

Duffy DJ, Krstic A, Halasz M, Schwarzl T, Fey D, Iljin K, Mehta JP, Killick K, Whilde J, Turriziani B, Haapa-Paananen S, Fey V, Fischer M, Westermann F, Henrich KO, Bannert S, Higgins DG, Kolch W.

Oncotarget. 2015 Dec 22;6(41):43182-201. doi: 10.18632/oncotarget.6568.

16.

Frequency modulation of ERK activation dynamics rewires cell fate.

Ryu H, Chung M, Dobrzyński M, Fey D, Blum Y, Lee SS, Peter M, Kholodenko BN, Jeon NL, Pertz O.

Mol Syst Biol. 2015 Nov 27;11(11):838. doi: 10.15252/msb.20156458. Erratum in: Mol Syst Biol. 2016 Apr;12(4):866.

17.

Hepatic Interferon-λ3 (IFNL3) Gene Expression Reveals Not to Be Attenuated in Non-Favorable IFNL3 rs4803217 or IFNL4 rs368234815 Minor Allele Carriers in Chronic Hepatitis C.

Amanzada A, Reinhardt L, Fey D, Zeisberg EM, Mihm S.

PLoS One. 2015 Nov 25;10(11):e0143783. doi: 10.1371/journal.pone.0143783. eCollection 2015.

18.

Multiscale model of dynamic neuromodulation integrating neuropeptide-induced signaling pathway activity with membrane electrophysiology.

Makadia HK, Anderson WD, Fey D, Sauter T, Schwaber JS, Vadigepalli R.

Biophys J. 2015 Jan 6;108(1):211-23. doi: 10.1016/j.bpj.2014.11.1851.

19.

Size and growth rate differences of larval Baltic sprat Sprattus sprattus collected with bongo and MIK nets.

Fey DP.

J Fish Biol. 2015 Jan;86(1):355-9. doi: 10.1111/jfb.12528. Epub 2014 Oct 13.

PMID:
25307421
20.

Mercury concentrations and distribution in soil, water, mine waste leachates, and air in and around mercury mines in the Big Bend region, Texas, USA.

Gray JE, Theodorakos PM, Fey DL, Krabbenhoft DP.

Environ Geochem Health. 2015 Feb;37(1):35-48. doi: 10.1007/s10653-014-9628-1. Epub 2014 Jun 29.

21.

Polyubiquitin chain assembly and organization determine the dynamics of protein activation and degradation.

Nguyen LK, Dobrzyński M, Fey D, Kholodenko BN.

Front Physiol. 2014 Jan 24;5:4. doi: 10.3389/fphys.2014.00004. eCollection 2014.

22.

Control of the G-protein cascade dynamics by GDP dissociation inhibitors.

Nikonova E, Tsyganov MA, Kolch W, Fey D, Kholodenko BN.

Mol Biosyst. 2013 Oct;9(10):2454-62. doi: 10.1039/c3mb70152b.

PMID:
23872884
23.

Pseudophosphatase STYX modulates cell-fate decisions and cell migration by spatiotemporal regulation of ERK1/2.

Reiterer V, Fey D, Kolch W, Kholodenko BN, Farhan H.

Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):E2934-43. doi: 10.1073/pnas.1301985110. Epub 2013 Jul 11.

24.

Hippocampal contribution to vector model hypothesis during cue-dependent navigation.

Diviney M, Fey D, Commins S.

Learn Mem. 2013 Jun 17;20(7):367-78. doi: 10.1101/lm.029272.112.

PMID:
23774767
25.

Crosstalk and signaling switches in mitogen-activated protein kinase cascades.

Fey D, Croucher DR, Kolch W, Kholodenko BN.

Front Physiol. 2012 Sep 18;3:355. doi: 10.3389/fphys.2012.00355. eCollection 2012.

26.

Geologic processes influence the effects of mining on aquatic ecosystems.

Schmidt TS, Clements WH, Wanty RB, Verplanck PL, Church SE, San Juan CA, Fey DL, Rockwell BW, DeWitt EH, Klein TL.

Ecol Appl. 2012 Apr;22(3):870-9.

PMID:
22645817
27.

Age and growth of the round goby Neogobius melanostomus in the Gulf of Gdańsk several years after invasion. Is the Baltic Sea a new Promised Land?

Sokołowska E, Fey DP.

J Fish Biol. 2011 Jun;78(7):1993-2009. doi: 10.1111/j.1095-8649.2011.02986.x. Epub 2011 May 10.

PMID:
21651546
28.

Development of a new toxic-unit model for the bioassessment of metals in streams.

Schmidt TS, Clements WH, Mitchell KA, Church SE, Wanty RB, Fey DL, Verplanck PL, San Juan CA.

Environ Toxicol Chem. 2010 Nov;29(11):2432-42. doi: 10.1002/etc.302.

PMID:
20853459
29.

Feedback control strategies for spatial navigation revealed by dynamic modelling of learning in the Morris water maze.

Fey D, Commins S, Bullinger E.

J Comput Neurosci. 2011 Apr;30(2):447-54. doi: 10.1007/s10827-010-0269-9. Epub 2010 Aug 27.

PMID:
20799059
30.

The use of otolith microstructure to estimate age in adult Atlantic cod Gadus morhua.

Hüssy K, Hinrichsen HH, Fey DP, Walther Y, Velasco A.

J Fish Biol. 2010 May;76(7):1640-54. doi: 10.1111/j.1095-8649.2010.02602.x.

PMID:
20557621
31.

Exact model reduction of combinatorial reaction networks.

Conzelmann H, Fey D, Gilles ED.

BMC Syst Biol. 2008 Aug 28;2:78. doi: 10.1186/1752-0509-2-78.

32.
33.

Specification for a reconfigurable optoelectronic VLSI processor suitable for digital signal processing.

Fey D, Kasche B, Burkert C, Tschäche O.

Appl Opt. 1998 Jan 10;37(2):284-95.

PMID:
18268584
34.

Oxidative priming of neutrophils by interferon-gamma.

Tennenberg SD, Fey DE, Lieser MJ.

J Leukoc Biol. 1993 Mar;53(3):301-8.

PMID:
8384238
35.

Cholecystokinin persistently suppresses meal size but not food intake in free-feeding rats.

West DB, Fey D, Woods SC.

Am J Physiol. 1984 May;246(5 Pt 2):R776-87.

PMID:
6326618
36.

Peritoneal perforation resulting from umbilical vein catheterization: an unusual pattern.

Fey D, Perrotta L.

J Pediatr. 1973 Sep;83(3):501. No abstract available.

PMID:
4725157
37.

Subcutaneous abscess due to Coccidioides immitis.

Feigin RD, Shackelford PG, Lins RD, Fey DK.

Am J Dis Child. 1972 Nov;124(5):734-5. No abstract available.

PMID:
5085486
38.

Periodontal changes in pregnancy.

Fey D.

Med Aff. 1970 Jul;32:16 passim. No abstract available.

PMID:
5269513

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