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A new role for a COPII cargo adaptor in autophagy.

Cui Y, Parashar S, Ferro-Novick S.

Autophagy. 2020 Feb;16(2):376-378. doi: 10.1080/15548627.2019.1699347. Epub 2019 Dec 3.


A COPII subunit acts with an autophagy receptor to target endoplasmic reticulum for degradation.

Cui Y, Parashar S, Zahoor M, Needham PG, Mari M, Zhu M, Chen S, Ho HC, Reggiori F, Farhan H, Brodsky JL, Ferro-Novick S.

Science. 2019 Jul 5;365(6448):53-60. doi: 10.1126/science.aau9263.


ER-phagy requires Lnp1, a protein that stabilizes rearrangements of the ER network.

Chen S, Cui Y, Parashar S, Novick PJ, Ferro-Novick S.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):E6237-E6244. doi: 10.1073/pnas.1805032115. Epub 2018 Jun 18.


Rewiring a Rab regulatory network reveals a possible inhibitory role for the vesicle tether, Uso1.

Yuan H, Davis S, Ferro-Novick S, Novick P.

Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8637-E8645. doi: 10.1073/pnas.1708394114. Epub 2017 Sep 25.


The link between autophagy and secretion: a story of multitasking proteins.

Farhan H, Kundu M, Ferro-Novick S.

Mol Biol Cell. 2017 May 1;28(9):1161-1164. doi: 10.1091/mbc.E16-11-0762. Review.


Crosstalk between the Secretory and Autophagy Pathways Regulates Autophagosome Formation.

Davis S, Wang J, Ferro-Novick S.

Dev Cell. 2017 Apr 10;41(1):23-32. doi: 10.1016/j.devcel.2017.03.015. Review.


Autophagosome formation: Where the secretory and autophagy pathways meet.

Wang J, Davis S, Zhu M, Miller EA, Ferro-Novick S.

Autophagy. 2017 May 4;13(5):973-974. doi: 10.1080/15548627.2017.1287657. Epub 2017 Feb 15. Review.


Sec24 phosphorylation regulates autophagosome abundance during nutrient deprivation.

Davis S, Wang J, Zhu M, Stahmer K, Lakshminarayan R, Ghassemian M, Jiang Y, Miller EA, Ferro-Novick S.

Elife. 2016 Nov 18;5. pii: e21167. doi: 10.7554/eLife.21167.


Auxilin facilitates membrane traffic in the early secretory pathway.

Ding J, Segarra VA, Chen S, Cai H, Lemmon SK, Ferro-Novick S.

Mol Biol Cell. 2016 Jan 1;27(1):127-36. doi: 10.1091/mbc.E15-09-0631. Epub 2015 Nov 4.


Ypt1/Rab1 regulates Hrr25/CK1δ kinase activity in ER-Golgi traffic and macroautophagy.

Wang J, Davis S, Menon S, Zhang J, Ding J, Cervantes S, Miller E, Jiang Y, Ferro-Novick S.

J Cell Biol. 2015 Jul 20;210(2):273-85. doi: 10.1083/jcb.201408075.


Nuclear pore complex integrity requires Lnp1, a regulator of cortical endoplasmic reticulum.

Casey AK, Chen S, Novick P, Ferro-Novick S, Wente SR.

Mol Biol Cell. 2015 Aug 1;26(15):2833-44. doi: 10.1091/mbc.E15-01-0053. Epub 2015 Jun 3.


Identifying a Rab effector on the macroautophagy pathway.

Wang J, Cervantes S, Davis S, Ferro-Novick S.

Methods Mol Biol. 2015;1298:117-25. doi: 10.1007/978-1-4939-2569-8_10.


Ypt1 and COPII vesicles act in autophagosome biogenesis and the early secretory pathway.

Davis S, Ferro-Novick S.

Biochem Soc Trans. 2015 Feb;43(1):92-6. doi: 10.1042/BST20140247.


Lunapark stabilizes nascent three-way junctions in the endoplasmic reticulum.

Chen S, Desai T, McNew JA, Gerard P, Novick PJ, Ferro-Novick S.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):418-23. doi: 10.1073/pnas.1423026112. Epub 2014 Dec 29.


A requirement for ER-derived COPII vesicles in phagophore initiation.

Wang J, Tan D, Cai Y, Reinisch KM, Walz T, Ferro-Novick S.

Autophagy. 2014 Apr;10(4):708-9. doi: 10.4161/auto.28103. Epub 2014 Feb 12.


Nobel 2013 Physiology or medicine: Traffic control system within cells.

Ferro-Novick S, Brose N.

Nature. 2013 Dec 5;504(7478):98. doi: 10.1038/504098a. No abstract available.


The EM structure of the TRAPPIII complex leads to the identification of a requirement for COPII vesicles on the macroautophagy pathway.

Tan D, Cai Y, Wang J, Zhang J, Menon S, Chou HT, Ferro-Novick S, Reinisch KM, Walz T.

Proc Natl Acad Sci U S A. 2013 Nov 26;110(48):19432-7. doi: 10.1073/pnas.1316356110. Epub 2013 Nov 11.


Different polarisome components play distinct roles in Slt2p-regulated cortical ER inheritance in Saccharomyces cerevisiae.

Li X, Ferro-Novick S, Novick P.

Mol Biol Cell. 2013 Oct;24(19):3145-54. doi: 10.1091/mbc.E13-05-0268. Epub 2013 Aug 7.


Sit4p/PP6 regulates ER-to-Golgi traffic by controlling the dephosphorylation of COPII coat subunits.

Bhandari D, Zhang J, Menon S, Lord C, Chen S, Helm JR, Thorsen K, Corbett KD, Hay JC, Ferro-Novick S.

Mol Biol Cell. 2013 Sep;24(17):2727-38. doi: 10.1091/mbc.E13-02-0114. Epub 2013 Jul 17.


Ypt1 recruits the Atg1 kinase to the preautophagosomal structure.

Wang J, Menon S, Yamasaki A, Chou HT, Walz T, Jiang Y, Ferro-Novick S.

Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9800-5. doi: 10.1073/pnas.1302337110. Epub 2013 May 28.


ER structure and function.

Chen S, Novick P, Ferro-Novick S.

Curr Opin Cell Biol. 2013 Aug;25(4):428-33. doi: 10.1016/ Epub 2013 Mar 13. Review.


The highly conserved COPII coat complex sorts cargo from the endoplasmic reticulum and targets it to the golgi.

Lord C, Ferro-Novick S, Miller EA.

Cold Spring Harb Perspect Biol. 2013 Feb 1;5(2). pii: a013367. doi: 10.1101/cshperspect.a013367. Review.


ER network formation requires a balance of the dynamin-like GTPase Sey1p and the Lunapark family member Lnp1p.

Chen S, Novick P, Ferro-Novick S.

Nat Cell Biol. 2012 Jun 24;14(7):707-16. doi: 10.1038/ncb2523.


Evolutionarily assembled cis-regulatory module at a human ciliopathy locus.

Lee JH, Silhavy JL, Lee JE, Al-Gazali L, Thomas S, Davis EE, Bielas SL, Hill KJ, Iannicelli M, Brancati F, Gabriel SB, Russ C, Logan CV, Sharif SM, Bennett CP, Abe M, Hildebrandt F, Diplas BH, Attié-Bitach T, Katsanis N, Rajab A, Koul R, Sztriha L, Waters ER, Ferro-Novick S, Woods CG, Johnson CA, Valente EM, Zaki MS, Gleeson JG.

Science. 2012 Feb 24;335(6071):966-9. doi: 10.1126/science.1213506. Epub 2012 Jan 26.


Trs65p, a subunit of the Ypt1p GEF TRAPPII, interacts with the Arf1p exchange factor Gea2p to facilitate COPI-mediated vesicle traffic.

Chen S, Cai H, Park SK, Menon S, Jackson CL, Ferro-Novick S.

Mol Biol Cell. 2011 Oct;22(19):3634-44. doi: 10.1091/mbc.E11-03-0197. Epub 2011 Aug 3.


Sequential interactions with Sec23 control the direction of vesicle traffic.

Lord C, Bhandari D, Menon S, Ghassemian M, Nycz D, Hay J, Ghosh P, Ferro-Novick S.

Nature. 2011 May 12;473(7346):181-6. doi: 10.1038/nature09969. Epub 2011 May 1.


TRAPP complexes in membrane traffic: convergence through a common Rab.

Barrowman J, Bhandari D, Reinisch K, Ferro-Novick S.

Nat Rev Mol Cell Biol. 2010 Nov;11(11):759-63. doi: 10.1038/nrm2999.


Trs85 directs a Ypt1 GEF, TRAPPIII, to the phagophore to promote autophagy.

Lynch-Day MA, Bhandari D, Menon S, Huang J, Cai H, Bartholomew CR, Brumell JH, Ferro-Novick S, Klionsky DJ.

Proc Natl Acad Sci U S A. 2010 Apr 27;107(17):7811-6. doi: 10.1073/pnas.1000063107. Epub 2010 Apr 7.


Activation of the mitogen-activated protein kinase, Slt2p, at bud tips blocks a late stage of endoplasmic reticulum inheritance in Saccharomyces cerevisiae.

Li X, Du Y, Siegel S, Ferro-Novick S, Novick P.

Mol Biol Cell. 2010 May 15;21(10):1772-82. doi: 10.1091/mbc.E09-06-0532. Epub 2010 Mar 31.


Establishing a role for the GTPase Ypt1p at the late Golgi.

Sclafani A, Chen S, Rivera-Molina F, Reinisch K, Novick P, Ferro-Novick S.

Traffic. 2010 Apr;11(4):520-32. doi: 10.1111/j.1600-0854.2010.01031.x. Epub 2010 Jan 6.


mTrs130 is a component of a mammalian TRAPPII complex, a Rab1 GEF that binds to COPI-coated vesicles.

Yamasaki A, Menon S, Yu S, Barrowman J, Meerloo T, Oorschot V, Klumperman J, Satoh A, Ferro-Novick S.

Mol Biol Cell. 2009 Oct;20(19):4205-15. doi: 10.1091/mbc.E09-05-0387. Epub 2009 Aug 5.


Kinetic analysis of the guanine nucleotide exchange activity of TRAPP, a multimeric Ypt1p exchange factor.

Chin HF, Cai Y, Menon S, Ferro-Novick S, Reinisch KM, De La Cruz EM.

J Mol Biol. 2009 Jun 5;389(2):275-88. doi: 10.1016/j.jmb.2009.03.068. Epub 2009 Apr 8.


The structural basis for activation of the Rab Ypt1p by the TRAPP membrane-tethering complexes.

Cai Y, Chin HF, Lazarova D, Menon S, Fu C, Cai H, Sclafani A, Rodgers DW, De La Cruz EM, Ferro-Novick S, Reinisch KM.

Cell. 2008 Jun 27;133(7):1202-13. doi: 10.1016/j.cell.2008.04.049.


TRAPPI tethers COPII vesicles by binding the coat subunit Sec23.

Cai H, Yu S, Menon S, Cai Y, Lazarova D, Fu C, Reinisch K, Hay JC, Ferro-Novick S.

Nature. 2007 Feb 22;445(7130):941-4. Epub 2007 Feb 7.


mBET3 is required for the organization of the TRAPP complexes.

Menon S, Cai H, Lu H, Dong G, Cai Y, Reinisch K, Ferro-Novick S.

Biochem Biophys Res Commun. 2006 Nov 24;350(3):669-77. Epub 2006 Sep 28.


Ptc1p regulates cortical ER inheritance via Slt2p.

Du Y, Walker L, Novick P, Ferro-Novick S.

EMBO J. 2006 Oct 4;25(19):4413-22. Epub 2006 Sep 14.


mBet3p is required for homotypic COPII vesicle tethering in mammalian cells.

Yu S, Satoh A, Pypaert M, Mullen K, Hay JC, Ferro-Novick S.

J Cell Biol. 2006 Jul 31;174(3):359-68.


Rtn1p is involved in structuring the cortical endoplasmic reticulum.

De Craene JO, Coleman J, Estrada de Martin P, Pypaert M, Anderson S, Yates JR 3rd, Ferro-Novick S, Novick P.

Mol Biol Cell. 2006 Jul;17(7):3009-20. Epub 2006 Apr 19.


The organization, structure, and inheritance of the ER in higher and lower eukaryotes.

Estrada de Martin P, Novick P, Ferro-Novick S.

Biochem Cell Biol. 2005 Dec;83(6):752-61. Review.


Mutants in trs120 disrupt traffic from the early endosome to the late Golgi.

Cai H, Zhang Y, Pypaert M, Walker L, Ferro-Novick S.

J Cell Biol. 2005 Dec 5;171(5):823-33. Epub 2005 Nov 28.


Ice2p is important for the distribution and structure of the cortical ER network in Saccharomyces cerevisiae.

Estrada de Martin P, Du Y, Novick P, Ferro-Novick S.

J Cell Sci. 2005 Jan 1;118(Pt 1):65-77. Epub 2004 Dec 7.


Functional specialization within a vesicle tethering complex: bypass of a subset of exocyst deletion mutants by Sec1p or Sec4p.

Wiederkehr A, De Craene JO, Ferro-Novick S, Novick P.

J Cell Biol. 2004 Dec 6;167(5):875-87.


Dynamics and inheritance of the endoplasmic reticulum.

Du Y, Ferro-Novick S, Novick P.

J Cell Sci. 2004 Jun 15;117(Pt 14):2871-8. Review.


Myo4p and She3p are required for cortical ER inheritance in Saccharomyces cerevisiae.

Estrada P, Kim J, Coleman J, Walker L, Dunn B, Takizawa P, Novick P, Ferro-Novick S.

J Cell Biol. 2003 Dec 22;163(6):1255-66.


Sec3p is needed for the spatial regulation of secretion and for the inheritance of the cortical endoplasmic reticulum.

Wiederkehr A, Du Y, Pypaert M, Ferro-Novick S, Novick P.

Mol Biol Cell. 2003 Dec;14(12):4770-82. Epub 2003 Sep 5.


The Yip1p.Yif1p complex is required for the fusion competence of endoplasmic reticulum-derived vesicles.

Barrowman J, Wang W, Zhang Y, Ferro-Novick S.

J Biol Chem. 2003 May 30;278(22):19878-84. Epub 2003 Mar 25.


A Ypt32p exchange factor is a putative effector of Ypt1p.

Wang W, Ferro-Novick S.

Mol Biol Cell. 2002 Sep;13(9):3336-43.


Sgf1p, a new component of the Sec34p/Sec35p complex.

Kim DW, Massey T, Sacher M, Pypaert M, Ferro-Novick S.

Traffic. 2001 Nov;2(11):820-30.


Aux1p/Swa2p is required for cortical endoplasmic reticulum inheritance in Saccharomyces cerevisiae.

Du Y, Pypaert M, Novick P, Ferro-Novick S.

Mol Biol Cell. 2001 Sep;12(9):2614-28.

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