Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 69

1.

Two more Posterior Hox genes and Hox cluster dispersal in echinoderms.

Szabó R, Ferrier DEK.

BMC Evol Biol. 2018 Dec 27;18(1):203. doi: 10.1186/s12862-018-1307-x.

2.

Amphioxus functional genomics and the origins of vertebrate gene regulation.

Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez-Skarmeta JL, Irimia M.

Nature. 2018 Dec;564(7734):64-70. doi: 10.1038/s41586-018-0734-6. Epub 2018 Nov 21.

3.

Horizons in evolutionary genomics: an interview with David Ferrier.

Ferrier DEK.

BMC Biol. 2018 Nov 1;16(1):124. doi: 10.1186/s12915-018-0587-3.

4.

Genome Biology: Unconventional DNA Repair in an Extreme Genome.

Ferrier DEK, Sogabe S.

Curr Biol. 2018 Oct 22;28(20):R1208-R1210. doi: 10.1016/j.cub.2018.09.004.

PMID:
30352193
5.

A Revised Spiralian Homeobox Gene Classification Incorporating New Polychaete Transcriptomes Reveals a Diverse TALE Class and a Divergent Hox Gene.

Barton-Owen TB, Szabó R, Somorjai IML, Ferrier DEK.

Genome Biol Evol. 2018 Sep 1;10(9):2151-2167. doi: 10.1093/gbe/evy144.

6.

Pax3/7 duplicated and diverged independently in amphioxus, the basal chordate lineage.

Barton-Owen TB, Ferrier DEK, Somorjai IML.

Sci Rep. 2018 Jun 20;8(1):9414. doi: 10.1038/s41598-018-27700-x.

7.

Light-sheet microscopy with attenuation-compensated propagation-invariant beams.

Nylk J, McCluskey K, Preciado MA, Mazilu M, Yang Z, Gunn-Moore FJ, Aggarwal S, Tello JA, Ferrier DEK, Dholakia K.

Sci Adv. 2018 Apr 6;4(4):eaar4817. doi: 10.1126/sciadv.aar4817. eCollection 2018 Apr.

8.

Genes for de novo biosynthesis of omega-3 polyunsaturated fatty acids are widespread in animals.

Kabeya N, Fonseca MM, Ferrier DEK, Navarro JC, Bay LK, Francis DS, Tocher DR, Castro LFC, Monroig Ó.

Sci Adv. 2018 May 2;4(5):eaar6849. doi: 10.1126/sciadv.aar6849. eCollection 2018 May.

9.

Recent advances in understanding the roles of whole genome duplications in evolution.

MacKintosh C, Ferrier DEK.

Version 2. F1000Res. 2017 Aug 31 [revised 2018 Jan 1];6:1623. doi: 10.12688/f1000research.11792.2. eCollection 2017. Review.

10.

Amphioxus SYCP1: a case of retrogene replacement and co-option of regulatory elements adjacent to the ParaHox cluster.

Garstang MG, Ferrier DEK.

Dev Genes Evol. 2018 Jan;228(1):13-30. doi: 10.1007/s00427-017-0600-9. Epub 2018 Jan 2.

11.

TCF/Lef regulates the Gsx ParaHox gene in central nervous system development in chordates.

Garstang MG, Osborne PW, Ferrier DE.

BMC Evol Biol. 2016 Mar 3;16:57. doi: 10.1186/s12862-016-0614-3.

12.

Multimode fibre: Light-sheet microscopy at the tip of a needle.

Plöschner M, Kollárová V, Dostál Z, Nylk J, Barton-Owen T, Ferrier DE, Chmelík R, Dholakia K, Čižmár T.

Sci Rep. 2015 Dec 14;5:18050. doi: 10.1038/srep18050.

13.

The origin of the Hox/ParaHox genes, the Ghost Locus hypothesis and the complexity of the first animal.

Ferrier DE.

Brief Funct Genomics. 2016 Sep;15(5):333-41. doi: 10.1093/bfgp/elv056. Epub 2015 Dec 4. Review.

PMID:
26637506
14.

Macro-optical trapping for sample confinement in light sheet microscopy.

Yang Z, Piksarv P, Ferrier DE, Gunn-Moore FJ, Dholakia K.

Biomed Opt Express. 2015 Jul 8;6(8):2778-85. doi: 10.1364/BOE.6.002778. eCollection 2015 Aug 1.

15.

Another biomineralising protostome with an msp130 gene and conservation of msp130 gene structure across Bilateria.

Szabó R, Ferrier DE.

Evol Dev. 2015 May-Jun;17(3):195-7. doi: 10.1111/ede.12122.

PMID:
25963197
16.

The dynamics of alkaline phosphatase activity during operculum regeneration in the polychaete Pomatoceros lamarckii.

Szabó R, Ferrier DE.

Int J Dev Biol. 2014;58(6-8):635-42. doi: 10.1387/ijdb.140116df.

17.

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima.

Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, Blankenburg KP, Brites D, Capella-Gutiérrez S, Coyle M, Dearden PK, Du Pasquier L, Duncan EJ, Ebert D, Eibner C, Erikson G, Evans PD, Extavour CG, Francisco L, Gabaldón T, Gillis WJ, Goodwin-Horn EA, Green JE, Griffiths-Jones S, Grimmelikhuijzen CJ, Gubbala S, Guigó R, Han Y, Hauser F, Havlak P, Hayden L, Helbing S, Holder M, Hui JH, Hunn JP, Hunnekuhl VS, Jackson L, Javaid M, Jhangiani SN, Jiggins FM, Jones TE, Kaiser TS, Kalra D, Kenny NJ, Korchina V, Kovar CL, Kraus FB, Lapraz F, Lee SL, Lv J, Mandapat C, Manning G, Mariotti M, Mata R, Mathew T, Neumann T, Newsham I, Ngo DN, Ninova M, Okwuonu G, Ongeri F, Palmer WJ, Patil S, Patraquim P, Pham C, Pu LL, Putman NH, Rabouille C, Ramos OM, Rhodes AC, Robertson HE, Robertson HM, Ronshaugen M, Rozas J, Saada N, Sánchez-Gracia A, Scherer SE, Schurko AM, Siggens KW, Simmons D, Stief A, Stolle E, Telford MJ, Tessmar-Raible K, Thornton R, van der Zee M, von Haeseler A, Williams JM, Willis JH, Wu Y, Zou X, Lawson D, Muzny DM, Worley KC, Gibbs RA, Akam M, Richards S.

PLoS Biol. 2014 Nov 25;12(11):e1002005. doi: 10.1371/journal.pbio.1002005. eCollection 2014 Nov.

18.

A compact Airy beam light sheet microscope with a tilted cylindrical lens.

Yang Z, Prokopas M, Nylk J, Coll-Lladó C, Gunn-Moore FJ, Ferrier DE, Vettenburg T, Dholakia K.

Biomed Opt Express. 2014 Sep 5;5(10):3434-42. doi: 10.1364/BOE.5.003434. eCollection 2014 Oct 1.

19.

Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes.

Fortunato SA, Adamski M, Ramos OM, Leininger S, Liu J, Ferrier DE, Adamska M.

Nature. 2014 Oct 30;514(7524):620-3. doi: 10.1038/nature13881.

PMID:
25355364
20.

Exploratory and confirmatory factor analyses of the WISC-IV with gifted students.

Rowe EW, Dandridge J, Pawlush A, Thompson DF, Ferrier DE.

Sch Psychol Q. 2014 Dec;29(4):536-552. doi: 10.1037/spq0000009. Epub 2014 Sep 22.

PMID:
25243468
21.

Relations between executive function and emotionality in preschoolers: Exploring a transitive cognition-emotion linkage.

Ferrier DE, Bassett HH, Denham SA.

Front Psychol. 2014 May 27;5:487. doi: 10.3389/fpsyg.2014.00487. eCollection 2014.

22.

Cell proliferation dynamics in regeneration of the operculum head appendage in the annelid Pomatoceros lamarckii.

Szabó R, Ferrier DE.

J Exp Zool B Mol Dev Evol. 2014 Jul;322(5):257-68. doi: 10.1002/jez.b.22572. Epub 2014 May 5.

PMID:
24799350
23.

Light-sheet microscopy using an Airy beam.

Vettenburg T, Dalgarno HI, Nylk J, Coll-Lladó C, Ferrier DE, Čižmár T, Gunn-Moore FJ, Dholakia K.

Nat Methods. 2014 May;11(5):541-4. doi: 10.1038/nmeth.2922. Epub 2014 Apr 6.

PMID:
24705473
24.

The Hox-TALE has been wagging for a long time.

Ferrier DE.

Elife. 2014 Mar 18;3:e02515. doi: 10.7554/eLife.02515.

25.

4273π: bioinformatics education on low cost ARM hardware.

Barker D, Ferrier DE, Holland PW, Mitchell JB, Plaisier H, Ritchie MG, Smart SD.

BMC Bioinformatics. 2013 Aug 12;14:243. doi: 10.1186/1471-2105-14-243.

26.

Time is of the essence for ParaHox homeobox gene clustering.

Garstang M, Ferrier DE.

BMC Biol. 2013 Jun 26;11:72. doi: 10.1186/1741-7007-11-72. Review.

27.

Ghost loci imply Hox and ParaHox existence in the last common ancestor of animals.

Mendivil Ramos O, Barker D, Ferrier DE.

Curr Biol. 2012 Oct 23;22(20):1951-6. doi: 10.1016/j.cub.2012.08.023. Epub 2012 Sep 27.

28.

Mechanisms of Gene Duplication and Translocation and Progress towards Understanding Their Relative Contributions to Animal Genome Evolution.

Mendivil Ramos O, Ferrier DE.

Int J Evol Biol. 2012;2012:846421. doi: 10.1155/2012/846421. Epub 2012 Aug 7.

29.

Evolution of signal multiplexing by 14-3-3-binding 2R-ohnologue protein families in the vertebrates.

Tinti M, Johnson C, Toth R, Ferrier DE, Mackintosh C.

Open Biol. 2012 Jul;2(7):120103. doi: 10.1098/rsob.120103.

30.

Evolutionary crossroads in developmental biology: annelids.

Ferrier DE.

Development. 2012 Aug;139(15):2643-53. doi: 10.1242/dev.074724. Review.

31.

Annelid Distal-less/Dlx duplications reveal varied post-duplication fates.

McDougall C, Korchagina N, Tobin JL, Ferrier DE.

BMC Evol Biol. 2011 Aug 16;11:241. doi: 10.1186/1471-2148-11-241.

32.

Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization.

Hui JH, McDougall C, Monteiro AS, Holland PW, Arendt D, Balavoine G, Ferrier DE.

Mol Biol Evol. 2012 Jan;29(1):157-65. doi: 10.1093/molbev/msr175. Epub 2011 Jul 4.

PMID:
21727239
33.

Integrated holographic system for all-optical manipulation of developing embryos.

Torres-Mapa ML, Antkowiak M, Cizmarova H, Ferrier DE, Dholakia K, Gunn-Moore FJ.

Biomed Opt Express. 2011 Jun 1;2(6):1564-75. doi: 10.1364/BOE.2.001564. Epub 2011 May 16.

34.

Tunicates push the limits of animal evo-devo.

Ferrier DE.

BMC Biol. 2011 Jan 20;9:3. doi: 10.1186/1741-7007-9-3.

35.

Evolution of Hox complexes.

Ferrier DE.

Adv Exp Med Biol. 2010;689:91-100.

PMID:
20795324
36.

Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression.

Butts T, Holland PW, Ferrier DE.

Proc Biol Sci. 2010 Nov 22;277(1699):3381-9. doi: 10.1098/rspb.2010.0647. Epub 2010 Jun 16.

37.

Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: frequent lineage-specific duplications and losses of developmental genes.

Shigenobu S, Bickel RD, Brisson JA, Butts T, Chang CC, Christiaens O, Davis GK, Duncan EJ, Ferrier DE, Iga M, Janssen R, Lin GW, Lu HL, McGregor AP, Miura T, Smagghe G, Smith JM, van der Zee M, Velarde RA, Wilson MJ, Dearden PK, Stern DL.

Insect Mol Biol. 2010 Mar;19 Suppl 2:47-62. doi: 10.1111/j.1365-2583.2009.00944.x.

PMID:
20482639
38.

Chordate Hox and ParaHox gene clusters differ dramatically in their repetitive element content.

Osborne PW, Ferrier DE.

Mol Biol Evol. 2010 Feb;27(2):217-20. doi: 10.1093/molbev/msp235. Epub 2009 Oct 5.

PMID:
19805440
39.

An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals.

Takahashi T, McDougall C, Troscianko J, Chen WC, Jayaraman-Nagarajan A, Shimeld SM, Ferrier DE.

BMC Evol Biol. 2009 Sep 25;9:240. doi: 10.1186/1471-2148-9-240.

40.

Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes.

Hui JH, Raible F, Korchagina N, Dray N, Samain S, Magdelenat G, Jubin C, Segurens B, Balavoine G, Arendt D, Ferrier DE.

BMC Biol. 2009 Jul 23;7:43. doi: 10.1186/1741-7007-7-43.

41.

Evolutionary Developmental Genomics: at the 2008 meeting of the European Society for Evolutionary Developmental Biology.

Ferrier DE, Martinez P.

Genomics. 2010 May;95(5):247-9. doi: 10.1016/j.ygeno.2009.07.001. Epub 2009 Jul 15. No abstract available.

42.

Differential regulation of ParaHox genes by retinoic acid in the invertebrate chordate amphioxus (Branchiostoma floridae).

Osborne PW, Benoit G, Laudet V, Schubert M, Ferrier DE.

Dev Biol. 2009 Mar 1;327(1):252-62. doi: 10.1016/j.ydbio.2008.11.027. Epub 2008 Dec 7.

43.

Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster.

Hui JH, Holland PW, Ferrier DE.

Evol Dev. 2008 Nov-Dec;10(6):725-30. doi: 10.1111/j.1525-142X.2008.00286.x.

PMID:
19021743
44.

Annelids in evolutionary developmental biology and comparative genomics.

McDougall C, Hui JH, Monteiro A, Takahashi T, Ferrier DE.

Parasite. 2008 Sep;15(3):321-8. Review.

45.

Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae.

Takatori N, Butts T, Candiani S, Pestarino M, Ferrier DE, Saiga H, Holland PW.

Dev Genes Evol. 2008 Dec;218(11-12):579-90. doi: 10.1007/s00427-008-0245-9. Epub 2008 Sep 17.

PMID:
18797923
46.

The amphioxus genome and the evolution of the chordate karyotype.

Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS.

Nature. 2008 Jun 19;453(7198):1064-71. doi: 10.1038/nature06967.

PMID:
18563158
47.

The amphioxus genome illuminates vertebrate origins and cephalochordate biology.

Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman GW, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida K, Yoshizaki F, Yu JK, Zhang Q, Zmasek CM, de Jong PJ, Osoegawa K, Putnam NH, Rokhsar DS, Satoh N, Holland PW.

Genome Res. 2008 Jul;18(7):1100-11. doi: 10.1101/gr.073676.107. Epub 2008 Jun 18. Erratum in: Genome Res. 2008 Aug;18(8):1380.

48.

The urbilaterian Super-Hox cluster.

Butts T, Holland PW, Ferrier DE.

Trends Genet. 2008 Jun;24(6):259-62. doi: 10.1016/j.tig.2007.09.006. Epub 2008 May 9.

PMID:
18472178
49.

The genome of the model beetle and pest Tribolium castaneum.

Tribolium Genome Sequencing Consortium, Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, Richards S, Roth S, Schröder R, Tautz D, Zdobnov EM, Muzny D, Gibbs RA, Weinstock GM, Attaway T, Bell S, Buhay CJ, Chandrabose MN, Chavez D, Clerk-Blankenburg KP, Cree A, Dao M, Davis C, Chacko J, Dinh H, Dugan-Rocha S, Fowler G, Garner TT, Garnes J, Gnirke A, Hawes A, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Jackson L, Kovar C, Kowis A, Lee S, Lewis LR, Margolis J, Morgan M, Nazareth LV, Nguyen N, Okwuonu G, Parker D, Richards S, Ruiz SJ, Santibanez J, Savard J, Scherer SE, Schneider B, Sodergren E, Tautz D, Vattahil S, Villasana D, White CS, Wright R, Park Y, Beeman RW, Lord J, Oppert B, Lorenzen M, Brown S, Wang L, Savard J, Tautz D, Richards S, Weinstock G, Gibbs RA, Liu Y, Worley K, Weinstock G, Elsik CG, Reese JT, Elhaik E, Landan G, Graur D, Arensburger P, Atkinson P, Beeman RW, Beidler J, Brown SJ, Demuth JP, Drury DW, Du YZ, Fujiwara H, Lorenzen M, Maselli V, Osanai M, Park Y, Robertson HM, Tu Z, Wang JJ, Wang S, Richards S, Song H, Zhang L, Sodergren E, Werner D, Stanke M, Morgenstern B, Solovyev V, Kosarev P, Brown G, Chen HC, Ermolaeva O, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Maglott D, Pruitt K, Sapojnikov V, Souvorov A, Mackey AJ, Waterhouse RM, Wyder S, Zdobnov EM, Zdobnov EM, Wyder S, Kriventseva EV, Kadowaki T, Bork P, Aranda M, Bao R, Beermann A, Berns N, Bolognesi R, Bonneton F, Bopp D, Brown SJ, Bucher G, Butts T, Chaumot A, Denell RE, Ferrier DE, Friedrich M, Gordon CM, Jindra M, Klingler M, Lan Q, Lattorff HM, Laudet V, von Levetsow C, Liu Z, Lutz R, Lynch JA, da Fonseca RN, Posnien N, Reuter R, Roth S, Savard J, Schinko JB, Schmitt C, Schoppmeier M, Schröder R, Shippy TD, Simonnet F, Marques-Souza H, Tautz D, Tomoyasu Y, Trauner J, Van der Zee M, Vervoort M, Wittkopp N, Wimmer EA, Yang X, Jones AK, Sattelle DB, Ebert PR, Nelson D, Scott JG, Beeman RW, Muthukrishnan S, Kramer KJ, Arakane Y, Beeman RW, Zhu Q, Hogenkamp D, Dixit R, Oppert B, Jiang H, Zou Z, Marshall J, Elpidina E, Vinokurov K, Oppert C, Zou Z, Evans J, Lu Z, Zhao P, Sumathipala N, Altincicek B, Vilcinskas A, Williams M, Hultmark D, Hetru C, Jiang H, Grimmelikhuijzen CJ, Hauser F, Cazzamali G, Williamson M, Park Y, Li B, Tanaka Y, Predel R, Neupert S, Schachtner J, Verleyen P, Raible F, Bork P, Friedrich M, Walden KK, Robertson HM, Angeli S, Forêt S, Bucher G, Schuetz S, Maleszka R, Wimmer EA, Beeman RW, Lorenzen M, Tomoyasu Y, Miller SC, Grossmann D, Bucher G.

Nature. 2008 Apr 24;452(7190):949-55. doi: 10.1038/nature06784. Epub 2008 Mar 23.

PMID:
18362917
50.

The amphioxus Hox cluster: characterization, comparative genomics, and evolution.

Amemiya CT, Prohaska SJ, Hill-Force A, Cook A, Wasserscheid J, Ferrier DE, Pascual-Anaya J, Garcia-Fernàndez J, Dewar K, Stadler PF.

J Exp Zool B Mol Dev Evol. 2008 Jul 15;310(5):465-77. doi: 10.1002/jez.b.21213.

PMID:
18351584

Supplemental Content

Loading ...
Support Center