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Items: 1 to 50 of 192

1.

Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid.

Ferretti L, Pérez-Martín E, Zhang F, Maree F, de Klerk-Lorist LM, van Schalkwykc L, Juleff ND, Charleston B, Ribeca P.

PLoS Pathog. 2020 Jan 6;16(1):e1008235. doi: 10.1371/journal.ppat.1008235. eCollection 2020 Jan.

2.

Y-chromosome and Surname Analyses for Reconstructing Past Population Structures: The Sardinian Population as a Test Case.

Grugni V, Raveane A, Colombo G, Nici C, Crobu F, Ongaro L, Battaglia V, Sanna D, Al-Zahery N, Fiorani O, Lisa A, Ferretti L, Achilli A, Olivieri A, Francalacci P, Piazza A, Torroni A, Semino O.

Int J Mol Sci. 2019 Nov 16;20(22). pii: E5763. doi: 10.3390/ijms20225763.

3.

Translating the Chronic Disease Self-Management Program for Community-Dwelling Adults With Developmental Disabilities.

Ferretti LA, McCallion P.

J Aging Health. 2019 Dec;31(10_suppl):22S-38S. doi: 10.1177/0898264318822363.

PMID:
31718414
4.

[French ccAFU guidelines - Update 2018-2020: Adrenal cancer].

Savoie PH, Murez T, Fléchon A, Sèbe P, Rocher L, Camparo P, Morel-Journel N, Ferretti L, Méjean A.

Prog Urol. 2018 Nov;28 Suppl 1:R177-R195. doi: 10.1016/j.purol.2019.01.011. Epub 2019 Aug 23. French.

PMID:
31610872
5.

[French ccAFU guidelines - Update 2018-2020: Retroperitoneal sarcoma].

Murez T, Savoie PH, Fléchon A, Durand X, Rocher L, Camparo P, Morel-Journel N, Ferretti L, Sèbe P, Méjean A.

Prog Urol. 2018 Nov;28 Suppl 1:R167-R176. doi: 10.1016/j.purol.2019.01.010. Epub 2019 Aug 23. French.

PMID:
31610871
6.

[French ccAFU guidelines - Update 2018-2020: Testicular germ cell tumors].

Murez T, Fléchon A, Savoie PH, Rocher L, Camparo P, Morel-Journel N, Ferretti L, Sèbe P, Méjean A.

Prog Urol. 2018 Nov;28 Suppl 1:R149-R166. doi: 10.1016/j.purol.2019.01.009. Epub 2019 Aug 23. French.

PMID:
31610870
7.

[French ccAFU guidelines - Update 2018-2020: Penile cancer].

Savoie PH, Fléchon A, Morel-Journel N, Murez T, Ferretti L, Camparo P, Rocher L, Sèbe P, Méjean A.

Prog Urol. 2018 Nov;28 Suppl 1:R133-R148. doi: 10.1016/j.purol.2019.01.008. Epub 2019 Aug 23. French.

PMID:
31610869
8.

Evolutionary and functional impact of common polymorphic inversions in the human genome.

Giner-Delgado C, Villatoro S, Lerga-Jaso J, Gayà-Vidal M, Oliva M, Castellano D, Pantano L, Bitarello BD, Izquierdo D, Noguera I, Olalde I, Delprat A, Blancher A, Lalueza-Fox C, Esko T, O'Reilly PF, Andrés AM, Ferretti L, Puig M, Cáceres M.

Nat Commun. 2019 Sep 17;10(1):4222. doi: 10.1038/s41467-019-12173-x.

9.

SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data.

Ferretti L, Tennakoon C, Silesian A, Ribeca GFA.

Genes (Basel). 2019 Jul 25;10(8). pii: E561. doi: 10.3390/genes10080561.

10.

Persistent Infection of African Buffalo (Syncerus caffer) with Foot-and-Mouth Disease Virus: Limited Viral Evolution and No Evidence of Antibody Neutralization Escape.

Cortey M, Ferretti L, Pérez-Martín E, Zhang F, de Klerk-Lorist LM, Scott K, Freimanis G, Seago J, Ribeca P, van Schalkwyk L, Juleff ND, Maree FF, Charleston B.

J Virol. 2019 Jul 17;93(15). pii: e00563-19. doi: 10.1128/JVI.00563-19. Print 2019 Aug 1.

11.

Update on the use of exome sequencing in the diagnosis of fetal abnormalities.

Ferretti L, Mellis R, Chitty LS.

Eur J Med Genet. 2019 Aug;62(8):103663. doi: 10.1016/j.ejmg.2019.05.002. Epub 2019 May 11. Review.

PMID:
31085342
12.

PRDM9 Diversity at Fine Geographical Scale Reveals Contrasting Evolutionary Patterns and Functional Constraints in Natural Populations of House Mice.

Vara C, Capilla L, Ferretti L, Ledda A, Sánchez-Guillén RA, Gabriel SI, Albert-Lizandra G, Florit-Sabater B, Bello-Rodríguez J, Ventura J, Searle JB, Mathias ML, Ruiz-Herrera A.

Mol Biol Evol. 2019 Aug 1;36(8):1686-1700. doi: 10.1093/molbev/msz091.

13.

Identification of a miniature Sae2/Ctp1/CtIP ortholog from Paramecium tetraurelia required for sexual reproduction and DNA double-strand break repair.

Godau J, Ferretti LP, Trenner A, Dubois E, von Aesch C, Marmignon A, Simon L, Kapusta A, Guérois R, Bétermier M, Sartori AA.

DNA Repair (Amst). 2019 May;77:96-108. doi: 10.1016/j.dnarep.2019.03.011. Epub 2019 Mar 22.

PMID:
30928893
14.

Analysis of the human Y-chromosome haplogroup Q characterizes ancient population movements in Eurasia and the Americas.

Grugni V, Raveane A, Ongaro L, Battaglia V, Trombetta B, Colombo G, Capodiferro MR, Olivieri A, Achilli A, Perego UA, Motta J, Tribaldos M, Woodward SR, Ferretti L, Cruciani F, Torroni A, Semino O.

BMC Biol. 2019 Jan 24;17(1):3. doi: 10.1186/s12915-018-0622-4.

15.

Hypertensive heart disease: Benefit of carvedilol in hemodynamic, left ventricular remodeling, and survival.

Dominguez RF, da Costa-Hong VA, Ferretti L, Fernandes F, Bortolotto LA, Consolim-Colombo FM, Egan BM, Lopes HF.

SAGE Open Med. 2019 Jan 8;7:2050312118823582. doi: 10.1177/2050312118823582. eCollection 2019.

16.

RETRACTED: Recommandations françaises du Comité de Cancérologie de l’AFU — Actualisation 2018—2020 : tumeur de la surrénale French ccAFU guidelines — Update 2018—2020: Adrenal cancer

Savoie PH, Murez T, Fléchon A, Sèbe P, Rocher L, Camparo P, Morel-Journel N, Ferretti L, Méjean A.

Prog Urol. 2018 Nov;28(12S):S175-S193. doi: 10.1016/j.purol.2018.08.015. Epub 2018 Oct 27. Review. French. Erratum in: Prog Urol. 2018 Nov;28 Suppl 1:R177-R195.

PMID:
30473001
17.

RETRACTED: Recommandations françaises du Comité de Cancérologie de l’AFU — Actualisation 2018—2020 : sarcomes rétropéritonéaux French ccAFU guidelines — Update 2018—2020: Retroperitoneal sarcoma

Murez T, Savoie PH, Fléchon A, Durand X, Rocher L, Camparo P, Morel-Journel N, Ferretti L, Sèbe P, Méjean A.

Prog Urol. 2018 Nov;28(12S):S165-S174. doi: 10.1016/j.purol.2018.08.010. Epub 2018 Oct 25. Review. French. Erratum in: Prog Urol. 2018 Nov;28 Suppl 1:R167-R176.

PMID:
30473000
18.

RETRACTED: Recommandations françaises du Comité de Cancérologie de l’AFU — Actualisation 2018—2020 : tumeurs germinales du testicule French ccAFU guidelines — Update 2018—2020: Testicular germ cell tumors

Murez T, Fléchon A, Savoie PH, Rocher L, Camparo P, Morel-Journel N, Ferretti L, Sèbe P, Méjean A.

Prog Urol. 2018 Nov;28(12S):S147-S164. doi: 10.1016/j.purol.2018.08.002. Epub 2018 Oct 27. Review. French. Erratum in: Prog Urol. 2018 Nov;28 Suppl 1:R149-R166.

PMID:
30472999
19.

The Site Frequency/Dosage Spectrum of Autopolyploid Populations.

Ferretti L, Ribeca P, Ramos-Onsins SE.

Front Genet. 2018 Oct 23;9:480. doi: 10.3389/fgene.2018.00480. eCollection 2018.

20.

RETRACTED: Recommandations françaises du Comité de Cancérologie de l’AFU — Actualisation 2018—2020: tumeurs du pénis French ccAFU guidelines — Update 2018—2020: Penile cancer

Savoie PH, Fléchon A, Morel-Journel N, Murez T, Ferretti L, Camparo P, Rocher L, Sèbe P, Méjean A.

Prog Urol. 2018 Nov;28(12S):S131-S146. doi: 10.1016/j.purol.2018.08.001. Epub 2018 Oct 22. Review. French. Erratum in: Prog Urol. 2018 Nov;28 Suppl 1:R133-R148.

PMID:
30361138
21.

Testicular tumours discovered during infertility workup are predominantly benign and could initially be managed by sparing surgery.

Lagabrielle S, Durand X, Droupy S, Izard V, Marcelli F, Huyghe E, Ferriere JM, Ferretti L.

J Surg Oncol. 2018 Sep;118(4):630-635. doi: 10.1002/jso.25203. Epub 2018 Sep 9.

PMID:
30196556
22.

Stilbene biosynthesis and gene expression in response to methyl jasmonate and continuous light treatment in Vitis vinifera cv. Malvasia del Lazio and Vitis rupestris Du Lot cell cultures.

Donati L, Ferretti L, Frallicciardi J, Rosciani R, Valletta A, Pasqua G.

Physiol Plant. 2019 Jun;166(2):646-662. doi: 10.1111/ppl.12813. Epub 2018 Sep 10.

PMID:
30091254
23.

Evolutionary constraints in fitness landscapes.

Ferretti L, Weinreich D, Tajima F, Achaz G.

Heredity (Edinb). 2018 Nov;121(5):466-481. doi: 10.1038/s41437-018-0110-1. Epub 2018 Jul 11.

24.

The neutral frequency spectrum of linked sites.

Ferretti L, Klassmann A, Raineri E, Ramos-Onsins SE, Wiehe T, Achaz G.

Theor Popul Biol. 2018 Sep;123:70-79. doi: 10.1016/j.tpb.2018.06.001. Epub 2018 Jun 28.

PMID:
29964061
25.

Assessing the Effectiveness of the Aging Mastery Program.

Ferretti L, McCallion P, McDonald E, Kye H, Hererra-Vensom A, Firman J.

Healthcare (Basel). 2018 May 7;6(2). pii: E41. doi: 10.3390/healthcare6020041.

26.

Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome.

Ferretti L, Di Nardo A, Singer B, Lasecka-Dykes L, Logan G, Wright CF, Pérez-Martín E, King DP, Tuthill TJ, Ribeca P.

Viruses. 2018 Apr 25;10(5). pii: E221. doi: 10.3390/v10050221.

27.

Mitochondrial DNA variants of Podolian cattle breeds testify for a dual maternal origin.

Di Lorenzo P, Lancioni H, Ceccobelli S, Colli L, Cardinali I, Karsli T, Capodiferro MR, Sahin E, Ferretti L, Ajmone Marsan P, Sarti FM, Lasagna E, Panella F, Achilli A.

PLoS One. 2018 Feb 20;13(2):e0192567. doi: 10.1371/journal.pone.0192567. eCollection 2018.

28.

Reconstructing the genetic history of Italians: new insights from a male (Y-chromosome) perspective.

Grugni V, Raveane A, Mattioli F, Battaglia V, Sala C, Toniolo D, Ferretti L, Gardella R, Achilli A, Olivieri A, Torroni A, Passarino G, Semino O.

Ann Hum Biol. 2018 Feb;45(1):44-56. doi: 10.1080/03014460.2017.1409801.

PMID:
29382284
29.

The third moments of the site frequency spectrum.

Klassmann A, Ferretti L.

Theor Popul Biol. 2018 Mar;120:16-28. doi: 10.1016/j.tpb.2017.12.002. Epub 2018 Jan 5.

30.

The Paleo-Indian Entry into South America According to Mitogenomes.

Brandini S, Bergamaschi P, Cerna MF, Gandini F, Bastaroli F, Bertolini E, Cereda C, Ferretti L, Gómez-Carballa A, Battaglia V, Salas A, Semino O, Achilli A, Olivieri A, Torroni A.

Mol Biol Evol. 2018 Feb 1;35(2):299-311. doi: 10.1093/molbev/msx267.

31.

Caregiving Load and Respite Service Use: A Comparison between Older Caregivers and Younger Caregivers.

Shi J, Chan K, Ferretti L, McCallion P.

J Gerontol Soc Work. 2018 Jan;61(1):31-44. doi: 10.1080/01634372.2017.1391364. Epub 2017 Nov 21.

PMID:
29058525
32.

[Penile prosthesis implantation: Indications and outcomes].

Akakpo W, Ben-Naoum K, Carnicelli D, Ferretti L, Graziana JP, Hupertan V, Huyghe E, Madec FX, Marcelli F, Methorst C, Morel-Journel N, Savareux L, Terrier JE, Yiou R, Faix A; Comité d’andrologie et de médecine sexuelle de l’Association Française d’Urologie.

Prog Urol. 2017 Nov;27(14):831-835. doi: 10.1016/j.purol.2017.09.005. Epub 2017 Oct 12. Review. French.

PMID:
29031427
33.

Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests.

Ferretti L, Ledda A, Wiehe T, Achaz G, Ramos-Onsins SE.

Genetics. 2017 Sep;207(1):229-240. doi: 10.1534/genetics.116.188763. Epub 2017 Jul 5.

34.

Understanding differences between caregivers and non-caregivers in completer rates of Chronic Disease Self-Management Program.

Shi J, McCallion P, Ferretti LA.

Public Health. 2017 Jun;147:128-135. doi: 10.1016/j.puhe.2017.02.001. Epub 2017 Mar 29.

PMID:
28404488
35.

Improving the Reach of the National Diabetes Prevention Program Within a Health Disparities Population: A Bronx New York Pilot Project Crossing Health- and Community-Based Sectors.

Morrow R, Ferretti L, Norwood C, Reich D, Chito-Childs E, McCallion P, Tiburcio J, McGee E, Lopez JA.

J Contin Educ Health Prof. 2016 Fall;36(4):300-306. doi: 10.1097/CEH.0000000000000136.

PMID:
28350313
36.

[CCAFU french national guidelines 2016-2018 on retroperitoneal sarcoma].

Murez T, Fléchon A, Rocher L, Camparo P, Morel-Journel N, Savoie PH, Ferretti L, Sèbe P, Méjean A, Durand X.

Prog Urol. 2016 Nov;27 Suppl 1:S183-S190. doi: 10.1016/S1166-7087(16)30708-4. Review. French.

PMID:
27846931
37.

[CCAFU french national guidelines 2016-2018 on penile cancer].

Sèbe P, Ferretti L, Savoie PH, Morel-Journel N, Fléchon A, Murez T, Rocher L, Camparo P, Méjean A, Durand X.

Prog Urol. 2016 Nov;27 Suppl 1:S167-S179. doi: 10.1016/S1166-7087(16)30707-2. Review. French.

PMID:
27846930
38.

[CCAFU french national guidelines 2016-2018 on testicular germ cell tumors].

Durand X, Fléchon A, Murez T, Rocher L, Camparo P, Morel-Journel N, Savoie PH, Ferretti L, Sèbe P, Méjean A.

Prog Urol. 2016 Nov;27 Suppl 1:S147-S165. doi: 10.1016/S1166-7087(16)30706-0. Review. French.

PMID:
27846929
39.

Cullin3-KLHL15 ubiquitin ligase mediates CtIP protein turnover to fine-tune DNA-end resection.

Ferretti LP, Himmels SF, Trenner A, Walker C, von Aesch C, Eggenschwiler A, Murina O, Enchev RI, Peter M, Freire R, Porro A, Sartori AA.

Nat Commun. 2016 Aug 26;7:12628. doi: 10.1038/ncomms12628.

40.

Exploring the Role of Theory of Mind in Moral Judgment: The Case of Children with Autism Spectrum Disorder.

Fadda R, Parisi M, Ferretti L, Saba G, Foscoliano M, Salvago A, Doneddu G.

Front Psychol. 2016 Apr 18;7:523. doi: 10.3389/fpsyg.2016.00523. eCollection 2016.

41.

Mapping human dispersals into the Horn of Africa from Arabian Ice Age refugia using mitogenomes.

Gandini F, Achilli A, Pala M, Bodner M, Brandini S, Huber G, Egyed B, Ferretti L, Gómez-Carballa A, Salas A, Scozzari R, Cruciani F, Coppa A, Parson W, Semino O, Soares P, Torroni A, Richards MB, Olivieri A.

Sci Rep. 2016 May 5;6:25472. doi: 10.1038/srep25472.

42.

Survey of uniparental genetic markers in the Maltese cattle breed reveals a significant founder effect but does not indicate local domestication.

Lancioni H, Di Lorenzo P, Cardinali I, Ceccobelli S, Capodiferro MR, Fichera A, Grugni V, Semino O, Ferretti L, Gruppetta A, Attard G, Achilli A, Lasagna E.

Anim Genet. 2016 Apr;47(2):267-9. doi: 10.1111/age.12408. Epub 2016 Feb 11. No abstract available.

PMID:
26868928
43.

Measuring epistasis in fitness landscapes: The correlation of fitness effects of mutations.

Ferretti L, Schmiegelt B, Weinreich D, Yamauchi A, Kobayashi Y, Tajima F, Achaz G.

J Theor Biol. 2016 May 7;396:132-43. doi: 10.1016/j.jtbi.2016.01.037. Epub 2016 Feb 20.

PMID:
26854875
44.

Dosage Compensation in the African Malaria Mosquito Anopheles gambiae.

Rose G, Krzywinska E, Kim J, Revuelta L, Ferretti L, Krzywinski J.

Genome Biol Evol. 2016 Jan 18;8(2):411-25. doi: 10.1093/gbe/evw004.

45.

Exploring the Y Chromosomal Ancestry of Modern Panamanians.

Grugni V, Battaglia V, Perego UA, Raveane A, Lancioni H, Olivieri A, Ferretti L, Woodward SR, Pascale JM, Cooke R, Myres N, Motta J, Torroni A, Achilli A, Semino O.

PLoS One. 2015 Dec 4;10(12):e0144223. doi: 10.1371/journal.pone.0144223. eCollection 2015.

46.

Prise en charge des tumeurs germinales du testicule en Aquitaine : état des lieux des pratiques en 2012.

Ferretti L, Gross-Goupil M, Sargos P, Cirilo Cassaigne I, Gaucher B, Demeaux H, Bousser V, Lebras Y, Pasticier G, Richaud P, Yacoub M, Roubaud G, Digue L.

Prog Urol. 2015 Nov;25(13):855. doi: 10.1016/j.purol.2015.08.280. French. No abstract available.

PMID:
26544475
47.

Mitogenomes from Egyptian Cattle Breeds: New Clues on the Origin of Haplogroup Q and the Early Spread of Bos taurus from the Near East.

Olivieri A, Gandini F, Achilli A, Fichera A, Rizzi E, Bonfiglio S, Battaglia V, Brandini S, De Gaetano A, El-Beltagi A, Lancioni H, Agha S, Semino O, Ferretti L, Torroni A.

PLoS One. 2015 Oct 29;10(10):e0141170. doi: 10.1371/journal.pone.0141170. eCollection 2015.

48.

Beyond fruit-flies: population genomic advances in non-Drosophila arthropods.

Hasselmann M, Ferretti L, Zayed A.

Brief Funct Genomics. 2015 Nov;14(6):424-31. doi: 10.1093/bfgp/elv010. Epub 2015 Mar 30. Review.

PMID:
25829451
49.

A generalized Watterson estimator for next-generation sequencing: From trios to autopolyploids.

Ferretti L, Ramos-Onsins SE.

Theor Popul Biol. 2015 Mar;100C:79-87. doi: 10.1016/j.tpb.2015.01.001. Epub 2015 Jan 13.

PMID:
25595553
50.

A model of substitution trajectories in sequence space and long-term protein evolution.

Usmanova DR, Ferretti L, Povolotskaya IS, Vlasov PK, Kondrashov FA.

Mol Biol Evol. 2015 Feb;32(2):542-54. doi: 10.1093/molbev/msu318. Epub 2014 Nov 17.

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