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Items: 44

1.

Long-term seasonal and interannual variability of marine aerobic anoxygenic photoheterotrophic bacteria.

Auladell A, Sánchez P, Sánchez O, Gasol JM, Ferrera I.

ISME J. 2019 Aug;13(8):1975-1987. doi: 10.1038/s41396-019-0401-4. Epub 2019 Mar 26.

PMID:
30914777
2.

Impact of grazing, resource availability and light on prokaryotic growth and diversity in the oligotrophic surface global ocean.

Teira E, Logares R, Gutiérrez-Barral A, Ferrera I, Varela MM, Morán XAG, Gasol JM.

Environ Microbiol. 2019 Apr;21(4):1482-1496. doi: 10.1111/1462-2920.14581. Epub 2019 Mar 20.

PMID:
30838751
3.

Delineation of ecologically distinct units of marine Bacteroidetes in the Northwestern Mediterranean Sea.

Díez-Vives C, Nielsen S, Sánchez P, Palenzuela O, Ferrera I, Sebastián M, Pedrós-Alió C, Gasol JM, Acinas SG.

Mol Ecol. 2019 Jun;28(11):2846-2859. doi: 10.1111/mec.15068. Epub 2019 May 17.

PMID:
30830717
4.

Microbial nitrate removal efficiency in groundwater polluted from agricultural activities with hybrid cork treatment wetlands.

Aguilar L, Gallegos Á, Arias CA, Ferrera I, Sánchez O, Rubio R, Saad MB, Missagia B, Caro P, Sahuquillo S, Pérez C, Morató J.

Sci Total Environ. 2019 Feb 25;653:723-734. doi: 10.1016/j.scitotenv.2018.10.426. Epub 2018 Nov 3.

PMID:
30759598
5.

Primer Design for an Accurate View of Picocyanobacterial Community Structure by Using High-Throughput Sequencing.

Huber P, Cornejo-Castillo FM, Ferrera I, Sánchez P, Logares R, Metz S, Balagué V, Acinas SG, Gasol JM, Unrein F.

Appl Environ Microbiol. 2019 Mar 22;85(7). pii: e02659-18. doi: 10.1128/AEM.02659-18. Print 2019 Apr 1.

6.

Quantifying long-term recurrence in planktonic microbial eukaryotes.

Giner CR, Balagué V, Krabberød AK, Ferrera I, Reñé A, Garcés E, Gasol JM, Logares R, Massana R.

Mol Ecol. 2019 Mar;28(5):923-935. doi: 10.1111/mec.14929. Epub 2019 Feb 4.

PMID:
30411822
7.

Spatial variability of marine bacterial and archaeal communities along the particulate matter continuum.

Mestre M, Ferrera I, Borrull E, Ortega-Retuerta E, Mbedi S, Grossart HP, Gasol JM, Sala MM.

Mol Ecol. 2017 Dec;26(24):6827-6840. doi: 10.1111/mec.14421. Epub 2017 Nov 24.

PMID:
29117634
8.

Electrochemical performance and microbial community profiles in microbial fuel cells in relation to electron transfer mechanisms.

Uria N, Ferrera I, Mas J.

BMC Microbiol. 2017 Oct 18;17(1):208. doi: 10.1186/s12866-017-1115-2.

9.

Evolutionary Trends of Perkinsozoa (Alveolata) Characters Based on Observations of Two New Genera of Parasitoids of dinoflagellates, Dinovorax gen. nov. and Snorkelia gen. nov.

Reñé A, Alacid E, Ferrera I, Garcés E.

Front Microbiol. 2017 Aug 24;8:1594. doi: 10.3389/fmicb.2017.01594. eCollection 2017.

10.

Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes.

Royo-Llonch M, Ferrera I, Cornejo-Castillo FM, Sánchez P, Salazar G, Stepanauskas R, González JM, Sieracki ME, Speich S, Stemmann L, Pedrós-Alió C, Acinas SG.

Front Microbiol. 2017 Jul 25;8:1317. doi: 10.3389/fmicb.2017.01317. eCollection 2017.

11.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.

Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M; Genoscope Technical Team, Acinas SG, Royo-Llonch M, Cornejo-Castillo FM, Logares R, Fernández-Gómez B, Bowler C, Cochrane G, Amid C, Hoopen PT, De Vargas C, Grimsley N, Desgranges E, Kandels-Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL; Tara Oceans Consortium Coordinators, Pesant S, Karsenti E, Wincker P.

Sci Data. 2017 Aug 1;4:170093. doi: 10.1038/sdata.2017.93.

12.

Light enhances the growth rates of natural populations of aerobic anoxygenic phototrophic bacteria.

Ferrera I, Sánchez O, Kolářová E, Koblížek M, Gasol JM.

ISME J. 2017 Oct;11(10):2391-2393. doi: 10.1038/ismej.2017.79. Epub 2017 May 23.

13.

Effects of grazing, phosphorus and light on the growth rates of major bacterioplankton taxa in the coastal NW Mediterranean.

Sánchez O, Koblížek M, Gasol JM, Ferrera I.

Environ Microbiol Rep. 2017 Jun;9(3):300-309. doi: 10.1111/1758-2229.12535. Epub 2017 May 4.

PMID:
28401694
14.

Diversity and Distribution of Freshwater Aerobic Anoxygenic Phototrophic Bacteria across a Wide Latitudinal Gradient.

Ferrera I, Sarmento H, Priscu JC, Chiuchiolo A, González JM, Grossart HP.

Front Microbiol. 2017 Feb 22;8:175. doi: 10.3389/fmicb.2017.00175. eCollection 2017.

15.

Insights into microbial diversity in wastewater treatment systems: How far have we come?

Ferrera I, Sánchez O.

Biotechnol Adv. 2016 Sep-Oct;34(5):790-802. doi: 10.1016/j.biotechadv.2016.04.003. Epub 2016 Apr 9. Review.

PMID:
27071535
16.
17.

Sample dilution and bacterial community composition influence empirical leucine-to-carbon conversion factors in surface waters of the world's oceans.

Teira E, Hernando-Morales V, Cornejo-Castillo FM, Alonso-Sáez L, Sarmento H, Valencia-Vila J, Serrano Catalá T, Hernández-Ruiz M, Varela MM, Ferrera I, Gutiérrez Morán XA, Gasol JM.

Appl Environ Microbiol. 2015 Dec;81(23):8224-32. doi: 10.1128/AEM.02454-15. Epub 2015 Sep 25.

18.

Ocean plankton. Determinants of community structure in the global plankton interactome.

Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio-Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, Bontempi G, Cabello AM, Coppola L, Cornejo-Castillo FM, d'Ovidio F, De Meester L, Ferrera I, Garet-Delmas MJ, Guidi L, Lara E, Pesant S, Royo-Llonch M, Salazar G, Sánchez P, Sebastian M, Souffreau C, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans coordinators, Gorsky G, Not F, Ogata H, Speich S, Stemmann L, Weissenbach J, Wincker P, Acinas SG, Sunagawa S, Bork P, Sullivan MB, Karsenti E, Bowler C, de Vargas C, Raes J.

Science. 2015 May 22;348(6237):1262073. doi: 10.1126/science.1262073.

19.

Ocean plankton. Structure and function of the global ocean microbiome.

Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos BT, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans coordinators, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P.

Science. 2015 May 22;348(6237):1261359. doi: 10.1126/science.1261359.

20.

Prokaryotic functional gene diversity in the sunlit ocean: Stumbling in the dark.

Ferrera I, Sebastian M, Acinas SG, Gasol JM.

Curr Opin Microbiol. 2015 Jun;25:33-9. doi: 10.1016/j.mib.2015.03.007. Epub 2015 Apr 6. Review.

PMID:
25863027
21.

Biological support media influence the bacterial biofouling community in reverse osmosis water reclamation demonstration plants.

Ferrera I, Mas J, Taberna E, Sanz J, Sánchez O.

Biofouling. 2015;31(2):173-80. doi: 10.1080/08927014.2015.1012640.

PMID:
25706000
22.

Transient changes in bacterioplankton communities induced by the submarine volcanic eruption of El Hierro (Canary Islands).

Ferrera I, Arístegui J, González JM, Montero MF, Fraile-Nuez E, Gasol JM.

PLoS One. 2015 Feb 11;10(2):e0118136. doi: 10.1371/journal.pone.0118136. eCollection 2015.

23.

Validation of a new catalysed reporter deposition-fluorescence in situ hybridization probe for the accurate quantification of marine Bacteroidetes populations.

Acinas SG, Ferrera I, Sarmento H, Díez-Vives C, Forn I, Ruiz-González C, Cornejo-Castillo FM, Salazar G, Gasol JM.

Environ Microbiol. 2015 Oct;17(10):3557-69. doi: 10.1111/1462-2920.12517. Epub 2014 Jul 7.

PMID:
24890225
24.

Spatial patterns of Aquificales in deep-sea vents along the Eastern Lau Spreading Center (SW Pacific).

Ferrera I, Banta AB, Reysenbach AL.

Syst Appl Microbiol. 2014 Sep;37(6):442-8. doi: 10.1016/j.syapm.2014.04.002. Epub 2014 May 23.

PMID:
24862554
25.

Prevalence of potentially thermophilic microorganisms in biofilms from greenhouse-enclosed drip irrigation systems.

Sánchez O, Ferrera I, Garrido L, del Mar Gómez-Ramos M, Fernández-Alba AR, Mas J.

Arch Microbiol. 2014 Mar;196(3):219-26. doi: 10.1007/s00203-014-0957-3. Epub 2014 Feb 5.

PMID:
24497111
26.

Marked seasonality of aerobic anoxygenic phototrophic bacteria in the coastal NW Mediterranean Sea as revealed by cell abundance, pigment concentration and pyrosequencing of pufM gene.

Ferrera I, Borrego CM, Salazar G, Gasol JM.

Environ Microbiol. 2014 Sep;16(9):2953-65. doi: 10.1111/1462-2920.12278. Epub 2013 Oct 17.

PMID:
24131493
27.

Dynamics of microbial diversity profiles in waters of different qualities. Approximation to an ecological quality indicator.

Garrido L, Sánchez O, Ferrera I, Tomàs N, Mas J.

Sci Total Environ. 2014 Jan 15;468-469:1154-61. doi: 10.1016/j.scitotenv.2013.08.065. Epub 2013 Oct 11.

PMID:
24121566
28.

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.

Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG.

Environ Microbiol. 2014 Sep;16(9):2659-71. doi: 10.1111/1462-2920.12250. Epub 2013 Sep 18.

PMID:
24102695
29.

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes.

Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H.

ISME J. 2013 Sep;7(9):1678-95. doi: 10.1038/ismej.2013.59. Epub 2013 Apr 11.

30.

Assessing bacterial diversity in a seawater-processing wastewater treatment plant by 454-pyrosequencing of the 16S rRNA and amoA genes.

Sánchez O, Ferrera I, González JM, Mas J.

Microb Biotechnol. 2013 Jul;6(4):435-42. doi: 10.1111/1751-7915.12052. Epub 2013 Apr 10.

31.

Effects of large river dam regulation on bacterioplankton community structure.

Ruiz-González C, Proia L, Ferrera I, Gasol JM, Sabater S.

FEMS Microbiol Ecol. 2013 May;84(2):316-31. doi: 10.1111/1574-6941.12063. Epub 2013 Jan 14.

32.

Distribution and growth of aerobic anoxygenic phototrophs in the Mediterranean Sea.

Hojerová E, Mašín M, Brunet C, Ferrera I, Gasol JM, Koblížek M.

Environ Microbiol. 2011 Oct;13(10):2717-25. doi: 10.1111/j.1462-2920.2011.02540.x. Epub 2011 Sep 1.

PMID:
21883792
33.

Comparison of growth rates of aerobic anoxygenic phototrophic bacteria and other bacterioplankton groups in coastal Mediterranean waters.

Ferrera I, Gasol JM, Sebastián M, Hojerová E, Koblízek M.

Appl Environ Microbiol. 2011 Nov;77(21):7451-8. doi: 10.1128/AEM.00208-11. Epub 2011 Jul 1.

34.

Evaluation of DNA extraction methods from complex phototrophic biofilms.

Ferrera I, Massana R, Balagué V, Pedrós-Alió C, Sánchez O, Mas J.

Biofouling. 2010 Apr;26(3):349-57. doi: 10.1080/08927011003605870.

PMID:
20140796
35.

Thermocrinis minervae sp. nov., a hydrogen- and sulfur-oxidizing, thermophilic member of the Aquificales from a Costa Rican terrestrial hot spring.

Caldwell SL, Liu Y, Ferrera I, Beveridge T, Reysenbach AL.

Int J Syst Evol Microbiol. 2010 Feb;60(Pt 2):338-43. doi: 10.1099/ijs.0.010496-0. Epub 2009 Aug 3.

PMID:
19651724
36.

Sulfurihydrogenibium kristjanssonii sp. nov., a hydrogen- and sulfur-oxidizing thermophile isolated from a terrestrial Icelandic hot spring.

Flores GE, Liu Y, Ferrera I, Beveridge TJ, Reysenbach AL.

Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1153-8. doi: 10.1099/ijs.0.65570-0.

PMID:
18450705
37.

Sulfurihydrogenibium rodmanii sp. nov., a sulfur-oxidizing chemolithoautotroph from the Uzon Caldera, Kamchatka Peninsula, Russia, and emended description of the genus Sulfurihydrogenibium.

O'Neill AH, Liu Y, Ferrera I, Beveridge TJ, Reysenbach AL.

Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1147-52. doi: 10.1099/ijs.0.65431-0.

PMID:
18450704
38.

Flow cytometric identification and enumeration of photosynthetic sulfur bacteria and potential for ecophysiological studies at the single-cell level.

Casamayor EO, Ferrera I, Cristina X, Borrego CM, Gasol JM.

Environ Microbiol. 2007 Aug;9(8):1969-85.

PMID:
17635543
39.

Characterization of a sulfide-oxidizing biofilm developed in a packed-column reactor.

Ferrera I, Sánchez O, Mas J.

Int Microbiol. 2007 Mar;10(1):29-37.

PMID:
17407058
40.

Diversity of 16S rRNA gene, ITS region and aclB gene of the Aquificales.

Ferrera I, Longhorn S, Banta AB, Liu Y, Preston D, Reysenbach AL.

Extremophiles. 2007 Jan;11(1):57-64. Epub 2006 Sep 20.

PMID:
16988757
41.

Presence of opportunistic oil-degrading microorganisms operating at the initial steps of oil extraction and handling.

Sánchez O, Ferrera I, Vigués N, Garcia de Oteyza T, Grimalt JO, Mas J.

Int Microbiol. 2006 Jun;9(2):119-24.

42.

High-diversity biofilm for the oxidation of sulfide-containing effluents.

Ferrera I, Massana R, Casamayor EO, Balagué V, Sánchez O, Pedrós-Alió C, Mas J.

Appl Microbiol Biotechnol. 2004 Jun;64(5):726-34. Epub 2004 Mar 2.

PMID:
14997354
43.

A new non-aerated illuminated packed-column reactor for the development of sulfide-oxidizing biofilms.

Ferrera I, Sánchez O, Mas J.

Appl Microbiol Biotechnol. 2004 Jun;64(5):659-64. Epub 2004 Mar 2.

PMID:
14997353
44.

In vivo role of adenosine-5'-phosphosulfate reductase in the purple sulfur bacterium Allochromatium vinosum.

Sánchez O, Ferrera I, Dahl C, Mas J.

Arch Microbiol. 2001 Oct;176(4):301-5.

PMID:
11685375

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