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Items: 33

1.

Influenza A virus protein NS1 exhibits strain-independent conformational plasticity.

Mitra S, Kumar D, Hu L, Sankaran B, Moosa MM, Rice AP, Ferreon JC, Ferreon ACM, Prasad BVV.

J Virol. 2019 Aug 2. pii: JVI.00917-19. doi: 10.1128/JVI.00917-19. [Epub ahead of print]

PMID:
31375595
2.

Single-Molecule FRET Detection of Early-Stage Conformations in α-Synuclein Aggregation.

Moosa MM, Ferreon JC, Ferreon ACM.

Methods Mol Biol. 2019;1948:221-233. doi: 10.1007/978-1-4939-9124-2_17.

PMID:
30771181
3.

A Chemical Chaperone Decouples TDP-43 Disordered Domain Phase Separation from Fibrillation.

Choi KJ, Tsoi PS, Moosa MM, Paulucci-Holthauzen A, Liao SJ, Ferreon JC, Ferreon ACM.

Biochemistry. 2018 Dec 18;57(50):6822-6826. doi: 10.1021/acs.biochem.8b01051. Epub 2018 Dec 10.

4.

Direct Single-Molecule Observation of Sequential DNA Bending Transitions by the Sox2 HMG Box.

Moosa MM, Tsoi PS, Choi KJ, Ferreon ACM, Ferreon JC.

Int J Mol Sci. 2018 Dec 4;19(12). pii: E3865. doi: 10.3390/ijms19123865.

5.

Glycan recognition in globally dominant human rotaviruses.

Hu L, Sankaran B, Laucirica DR, Patil K, Salmen W, Ferreon ACM, Tsoi PS, Lasanajak Y, Smith DF, Ramani S, Atmar RL, Estes MK, Ferreon JC, Prasad BVV.

Nat Commun. 2018 Jul 6;9(1):2631. doi: 10.1038/s41467-018-05098-4.

6.

Structure of an EIIC sugar transporter trapped in an inward-facing conformation.

Ren Z, Lee J, Moosa MM, Nian Y, Hu L, Xu Z, McCoy JG, Ferreon ACM, Im W, Zhou M.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):5962-5967. doi: 10.1073/pnas.1800647115. Epub 2018 May 21.

7.

Ligand interactions and the protein order-disorder energetic continuum.

Moosa MM, Ferreon JC, Ferreon ACM.

Semin Cell Dev Biol. 2018 May 12. pii: S1084-9521(17)30391-9. doi: 10.1016/j.semcdb.2018.05.007. [Epub ahead of print] Review.

PMID:
29753880
8.

Acetylation Disfavors Tau Phase Separation.

Ferreon JC, Jain A, Choi KJ, Tsoi PS, MacKenzie KR, Jung SY, Ferreon AC.

Int J Mol Sci. 2018 May 4;19(5). pii: E1360. doi: 10.3390/ijms19051360.

9.

Denaturant-specific effects on the structural energetics of a protein-denatured ensemble.

Moosa MM, Goodman AZ, Ferreon JC, Lee CW, Ferreon ACM, Deniz AA.

Eur Biophys J. 2018 Jan;47(1):89-94. doi: 10.1007/s00249-017-1260-4. Epub 2017 Oct 27.

10.

Corrigendum: Quantitative real-time imaging of glutathione.

Jiang X, Chen J, Bajić A, Zhang C, Song X, Carroll SL, Cai ZL, Tang M, Xue M, Cheng N, Schaaf CP, Li F, MacKenzie KR, Ferreon ACM, Xia F, Wang MC, Maletić-Savatić M, Wang J.

Nat Commun. 2017 Oct 3;8:16163. doi: 10.1038/ncomms16163.

11.

The N-Terminal Domain of ALS-Linked TDP-43 Assembles without Misfolding.

Tsoi PS, Choi KJ, Leonard PG, Sizovs A, Moosa MM, MacKenzie KR, Ferreon JC, Ferreon ACM.

Angew Chem Int Ed Engl. 2017 Oct 2;56(41):12590-12593. doi: 10.1002/anie.201706769. Epub 2017 Sep 5.

PMID:
28833982
12.

Quantitative real-time imaging of glutathione.

Jiang X, Chen J, Bajić A, Zhang C, Song X, Carroll SL, Cai ZL, Tang M, Xue M, Cheng N, Schaaf CP, Li F, MacKenzie KR, Ferreon ACM, Xia F, Wang MC, Maletić-Savatić M, Wang J.

Nat Commun. 2017 Jul 13;8:16087. doi: 10.1038/ncomms16087. Erratum in: Nat Commun. 2017 Oct 03;8:16163.

13.

Forced folding of a disordered protein accesses an alternative folding landscape.

Moosa MM, Ferreon AC, Deniz AA.

Chemphyschem. 2015 Jan 12;16(1):90-4. doi: 10.1002/cphc.201402661. Epub 2014 Oct 24.

14.

Modulation of allostery by protein intrinsic disorder.

Ferreon AC, Ferreon JC, Wright PE, Deniz AA.

Nature. 2013 Jun 20;498(7454):390-4. doi: 10.1038/nature12294.

15.

Counteracting chemical chaperone effects on the single-molecule α-synuclein structural landscape.

Ferreon AC, Moosa MM, Gambin Y, Deniz AA.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17826-31. doi: 10.1073/pnas.1201802109. Epub 2012 Jul 23.

16.

Osmolyte-, binding-, and temperature-induced transitions of intrinsically disordered proteins.

Ferreon AC, Deniz AA.

Methods Mol Biol. 2012;896:257-66. doi: 10.1007/978-1-4614-3704-8_17.

PMID:
22821530
17.

Protein folding at single-molecule resolution.

Ferreon AC, Deniz AA.

Biochim Biophys Acta. 2011 Aug;1814(8):1021-9. doi: 10.1016/j.bbapap.2011.01.011. Epub 2011 Feb 17. Review.

18.

Visualizing a one-way protein encounter complex by ultrafast single-molecule mixing.

Gambin Y, VanDelinder V, Ferreon AC, Lemke EA, Groisman A, Deniz AA.

Nat Methods. 2011 Mar;8(3):239-41. doi: 10.1038/nmeth.1568. Epub 2011 Feb 6.

19.

Graded enhancement of p53 binding to CREB-binding protein (CBP) by multisite phosphorylation.

Lee CW, Ferreon JC, Ferreon AC, Arai M, Wright PE.

Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19290-5. doi: 10.1073/pnas.1013078107. Epub 2010 Oct 20.

20.

Single-molecule fluorescence studies of intrinsically disordered proteins.

Ferreon AC, Moran CR, Gambin Y, Deniz AA.

Methods Enzymol. 2010;472:179-204. doi: 10.1016/S0076-6879(10)72010-3.

PMID:
20580965
21.

Alteration of the alpha-synuclein folding landscape by a mutation related to Parkinson's disease.

Ferreon AC, Moran CR, Ferreon JC, Deniz AA.

Angew Chem Int Ed Engl. 2010 May 3;49(20):3469-72. doi: 10.1002/anie.201000378. No abstract available.

22.

High-resolution temperature-concentration diagram of alpha-synuclein conformation obtained from a single Förster resonance energy transfer image in a microfluidic device.

Vandelinder V, Ferreon AC, Gambin Y, Deniz AA, Groisman A.

Anal Chem. 2009 Aug 15;81(16):6929-35. doi: 10.1021/ac901008c.

23.

Direct single-molecule observation of a protein living in two opposed native structures.

Gambin Y, Schug A, Lemke EA, Lavinder JJ, Ferreon AC, Magliery TJ, Onuchic JN, Deniz AA.

Proc Natl Acad Sci U S A. 2009 Jun 23;106(25):10153-8. doi: 10.1073/pnas.0904461106. Epub 2009 Jun 8.

24.

Interplay of alpha-synuclein binding and conformational switching probed by single-molecule fluorescence.

Ferreon AC, Gambin Y, Lemke EA, Deniz AA.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5645-50. doi: 10.1073/pnas.0809232106. Epub 2009 Mar 17.

25.

Alpha-synuclein multistate folding thermodynamics: implications for protein misfolding and aggregation.

Ferreon AC, Deniz AA.

Biochemistry. 2007 Apr 17;46(15):4499-509. Epub 2007 Mar 23.

PMID:
17378587
26.

Protein phase diagrams II: nonideal behavior of biochemical reactions in the presence of osmolytes.

Ferreon AC, Ferreon JC, Bolen DW, Rösgen J.

Biophys J. 2007 Jan 1;92(1):245-56. Epub 2006 Oct 6.

27.

Metrics that differentiate the origins of osmolyte effects on protein stability: a test of the surface tension proposal.

Auton M, Ferreon AC, Bolen DW.

J Mol Biol. 2006 Sep 1;361(5):983-92. Epub 2006 Aug 4.

PMID:
16889793
28.

Molecular determinants of TRIF proteolysis mediated by the hepatitis C virus NS3/4A protease.

Ferreon JC, Ferreon AC, Li K, Lemon SM.

J Biol Chem. 2005 May 27;280(21):20483-92. Epub 2005 Mar 14.

29.

Immune evasion by hepatitis C virus NS3/4A protease-mediated cleavage of the Toll-like receptor 3 adaptor protein TRIF.

Li K, Foy E, Ferreon JC, Nakamura M, Ferreon AC, Ikeda M, Ray SC, Gale M Jr, Lemon SM.

Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2992-7. Epub 2005 Feb 14.

30.
31.

Structural thermodynamics of a random coil protein in guanidine hydrochloride.

Yang M, Ferreon AC, Bolen DW.

Proteins. 2000;Suppl 4:44-9.

PMID:
11013399
32.

Philippine population database at nine microsatellite loci for forensic and paternity applications.

Halos SC, Chu JY, Ferreon AC, Magno MM.

Forensic Sci Int. 1999 Apr 12;101(1):27-32.

PMID:
10376334
33.

Allele frequency distributions of the polymorphic STR loci HUMVWA, HUMFES, HUMF13A01 and the VNTR D1S80 in a Filipino population from Metro Manila.

Halos SC, Fortuno ES 3rd, Ferreon AC, Chu JY, Miranda J, Harada S, Benecke M.

Int J Legal Med. 1998;111(4):224-6.

PMID:
9646171

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