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Items: 1 to 50 of 640

1.

From genome to phenome: genome-wide association studies and other approaches that bridge the genotype to phenotpe gap.

Fernie AR, Gutierrez-Marcos J.

Plant J. 2019 Jan;97(1):5-7. doi: 10.1111/tpj.14219. No abstract available.

PMID:
30636100
2.

The Role of Abscisic Acid Signaling in Maintaining the Metabolic Balance Required for Arabidopsis Growth under Non-stress Conditions.

Yoshida T, Obata T, Feil R, Lunn JE, Fujita Y, Yamaguchi-Shinozaki K, Fernie AR.

Plant Cell. 2019 Jan 3. pii: tpc.00766.2018. doi: 10.1105/tpc.18.00766. [Epub ahead of print]

PMID:
30606780
3.

Identification of quantitative trait loci and candidate genes for primary metabolite content in strawberry fruit.

Vallarino JG, Pott DM, Cruz-Rus E, Miranda L, Medina-Minguez JJ, Valpuesta V, Fernie AR, Sánchez-Sevilla JF, Osorio S, Amaya I.

Hortic Res. 2019 Jan 1;6:4. doi: 10.1038/s41438-018-0077-3. eCollection 2019.

4.

Nitrate nutrition influences multiple factors in order to increase energy efficiency under hypoxia in Arabidopsis.

Wany A, Gupta AK, Kumari A, Mishra S, Singh N, Pandey S, Vanvari R, Igamberdiev AU, Fernie AR, Gupta KJ.

Ann Bot. 2018 Dec 10. doi: 10.1093/aob/mcy202. [Epub ahead of print]

PMID:
30535180
5.

MetNet: Metabolite network prediction from high-resolution mass spectrometry data in R aids metabolite annotation.

Naake T, Fernie AR.

Anal Chem. 2018 Nov 30. doi: 10.1021/acs.analchem.8b04096. [Epub ahead of print]

PMID:
30500168
6.

The plastidic sugar transporter pSuT influences flowering and affects cold responses.

Patzke K, Prananingrum P, Klemens PAW, Trentmann O, Martins Rodrigues C, Keller I, Fernie AR, Geigenberger P, Bölter B, Lehmann M, Schmitz-Esser S, Pommerrenig B, Haferkamp I, Neuhaus HE.

Plant Physiol. 2018 Nov 27. pii: pp.01036.2018. doi: 10.1104/pp.18.01036. [Epub ahead of print]

7.

Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome.

Perez de Souza L, Scossa F, Proost S, Bitocchi E, Papa R, Tohge T, Fernie AR.

Plant J. 2018 Nov 27. doi: 10.1111/tpj.14178. [Epub ahead of print]

PMID:
30480348
8.

Insights into ABA-mediated regulation of guard cell primary metabolism revealed by systems biology approaches.

Yoshida T, Anjos LD, Medeiros DB, Araújo WL, Fernie AR, Daloso DM.

Prog Biophys Mol Biol. 2018 Nov 14. pii: S0079-6107(18)30189-5. doi: 10.1016/j.pbiomolbio.2018.11.006. [Epub ahead of print]

PMID:
30447225
9.

Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth.

Fàbregas N, Lozano-Elena F, Blasco-Escámez D, Tohge T, Martínez-Andújar C, Albacete A, Osorio S, Bustamante M, Riechmann JL, Nomura T, Yokota T, Conesa A, Alfocea FP, Fernie AR, Caño-Delgado AI.

Nat Commun. 2018 Nov 8;9(1):4680. doi: 10.1038/s41467-018-06861-3.

10.

Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry.

Llorente C, Jimenez R, Jackie, Brotman Y, Fernie AR, Sreenivasulu N.

Methods Mol Biol. 2019;1892:187-199. doi: 10.1007/978-1-4939-8914-0_11.

PMID:
30397807
11.

In vivo detection of protein cysteine sulfenylation in plastids.

De Smet B, Willems P, Fernandez-Fernandez AD, Alseekh S, Fernie AR, Messens J, Van Breusegem F.

Plant J. 2018 Nov 5. doi: 10.1111/tpj.14146. [Epub ahead of print]

PMID:
30394608
12.

Impairment of hormone pathways results in a general disturbance of fruit primary metabolism in tomato.

Li Y, Lu Y, Li L, Chu Z, Zhang H, Li H, Fernie AR, Ouyang B.

Food Chem. 2019 Feb 15;274:170-179. doi: 10.1016/j.foodchem.2018.08.026. Epub 2018 Aug 9.

PMID:
30372923
13.

Advances in metabolic flux analysis toward genome-scale profiling of higher organisms.

Basler G, Fernie AR, Nikoloski Z.

Biosci Rep. 2018 Nov 23;38(6). pii: BSR20170224. doi: 10.1042/BSR20170224. Print 2018 Dec 21. Review.

14.

Publisher Correction: How fruit ripening is ENCODEd.

Scossa F, Fernie AR.

Nat Plants. 2018 Nov;4(11):974. doi: 10.1038/s41477-018-0303-x.

PMID:
30337692
15.

The Mitochondrial Thioredoxin System Contributes to the Metabolic Responses Under Drought Episodes in Arabidopsis.

da Fonseca-Pereira P, Daloso DM, Gago J, de Oliveira Silva FM, Condori-Apfata JA, Florez-Sarasa I, Tohge T, Reichheld JP, Nunes-Nesi A, Fernie AR, Araújo WL.

Plant Cell Physiol. 2018 Oct 17. doi: 10.1093/pcp/pcy194. [Epub ahead of print]

PMID:
30329109
16.

The arginine decarboxylase gene ADC1, associated to the putrescine pathway, plays an important role in potato cold-acclimated freezing tolerance as revealed by transcriptome and metabolome analyses.

Kou S, Chen L, Tu W, Scossa F, Wang Y, Liu J, Fernie AR, Song B, Xie C.

Plant J. 2018 Dec;96(6):1283-1298. doi: 10.1111/tpj.14126. Epub 2018 Nov 27.

PMID:
30307077
17.

Exploring the Diversity of Plant Metabolism.

Fang C, Fernie AR, Luo J.

Trends Plant Sci. 2019 Jan;24(1):83-98. doi: 10.1016/j.tplants.2018.09.006. Epub 2018 Oct 5. Review.

PMID:
30297176
18.

The proof is in the bulb: glycerol influences key stages of lily development.

Lazare S, Bechar D, Fernie AR, Brotman Y, Zaccai M.

Plant J. 2018 Oct 4. doi: 10.1111/tpj.14122. [Epub ahead of print]

PMID:
30288818
19.

A gene-stacking approach to overcome the trade-off between drought stress tolerance and growth in Arabidopsis.

Kudo M, Kidokoro S, Yoshida T, Mizoi J, Kojima M, Takebayashi Y, Sakakibara H, Fernie AR, Shinozaki K, Yamaguchi-Shinozaki K.

Plant J. 2018 Oct 4. doi: 10.1111/tpj.14110. [Epub ahead of print]

PMID:
30285298
20.

The Role of Persulfide Metabolism During Arabidopsis Seed Development Under Light and Dark Conditions.

Lorenz C, Brandt S, Borisjuk L, Rolletschek H, Heinzel N, Tohge T, Fernie AR, Braun HP, Hildebrandt TM.

Front Plant Sci. 2018 Sep 19;9:1381. doi: 10.3389/fpls.2018.01381. eCollection 2018.

21.

Genetic diversity of strawberry germplasm using metabolomic biomarkers.

Vallarino JG, de Abreu E Lima F, Soria C, Tong H, Pott DM, Willmitzer L, Fernie AR, Nikoloski Z, Osorio S.

Sci Rep. 2018 Sep 26;8(1):14386. doi: 10.1038/s41598-018-32212-9.

22.

How fruit ripening is ENCODEd.

Scossa F, Fernie AR.

Nat Plants. 2018 Oct;4(10):744-745. doi: 10.1038/s41477-018-0272-0. No abstract available. Erratum in: Nat Plants. 2018 Nov;4(11):974.

PMID:
30250278
23.

A Tomato Tocopherol-Binding Protein Sheds Light on Intracellular α-Tocopherol Metabolism in Plants.

Bermúdez L, Del Pozo T, Silvestre Lira B, de Godoy F, Boos I, Romanò C, Previtali V, Almeida J, Bréhélin C, Asis R, Quadrana L, Demarco D, Alseekh S, Salinas Gamboa R, Pérez-Flores L, Dominguez PG, Rothan C, Fernie AR, González M, Stocker A, Hemmerle A, Clausen MH, Carrari F, Rossi M.

Plant Cell Physiol. 2018 Nov 1;59(11):2188-2203. doi: 10.1093/pcp/pcy191.

PMID:
30239816
24.

Metabolome and Lipidome Profiles of Populus × canescens Twig Tissues During Annual Growth Show Phospholipid-Linked Storage and Mobilization of C, N, and S.

Watanabe M, Netzer F, Tohge T, Orf I, Brotman Y, Dubbert D, Fernie AR, Rennenberg H, Hoefgen R, Herschbach C.

Front Plant Sci. 2018 Sep 5;9:1292. doi: 10.3389/fpls.2018.01292. eCollection 2018.

25.

A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population.

Brog YM, Osorio S, Yichie Y, Alseekh S, Bensal E, Kochevenko A, Zamir D, Fernie AR.

Plant J. 2018 Sep 19. doi: 10.1111/tpj.14095. [Epub ahead of print]

PMID:
30230636
26.

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom.

Murik O, Tirichine L, Prihoda J, Thomas Y, Araújo WL, Allen AE, Fernie AR, Bowler C.

New Phytol. 2019 Feb;221(3):1303-1316. doi: 10.1111/nph.15479. Epub 2018 Nov 22.

PMID:
30216452
27.

An L,L-diaminopimelate aminotransferase mutation leads to metabolic shifts and growth inhibition in Arabidopsis.

Cavalcanti JHF, Kirma M, Barros JAS, Quinhones CGS, Pereira-Lima ÍA, Obata T, Nunes-Nesi A, Galili G, Fernie AR, Avin-Wittenberg T, Araújo WL.

J Exp Bot. 2018 Nov 26;69(22):5489-5506. doi: 10.1093/jxb/ery325.

28.

Combined drought and virus infection trigger aspects of respiratory metabolism related to grapevine physiological responses.

El Aou-Ouad H, Bota J, Obata T, Montero R, Fernie AR, Medrano H, Pou A, Florez-Sarasa I.

J Plant Physiol. 2018 Dec;231:19-30. doi: 10.1016/j.jplph.2018.08.009. Epub 2018 Aug 29.

PMID:
30212658
29.

Extending the cascade: identification of a mitogen-activated protein kinase phosphatase playing a key role in rice yield.

Fernie AR.

Plant J. 2018 Sep;95(6):935-936. doi: 10.1111/tpj.13981. No abstract available.

PMID:
30187613
30.

Metabolome Analysis of Multi-Connected Biparental Chromosome Segment Substitution Line Populations.

Chen J, Wang J, Chen W, Sun W, Peng M, Yuan Z, Shen S, Xie K, Jin C, Sun Y, Liu X, Fernie AR, Yu S, Luo J.

Plant Physiol. 2018 Oct;178(2):612-625. doi: 10.1104/pp.18.00490. Epub 2018 Aug 23.

PMID:
30139795
31.

Corrigendum: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants.

Tohge T, de Souza LP, Fernie AR.

J Exp Bot. 2018 Aug 14;69(18):4497. doi: 10.1093/jxb/ery260. No abstract available.

PMID:
30099511
32.

Extended darkness induces internal turnover of glucosinolates in Arabidopsis thaliana leaves.

Brandt S, Fachinger S, Tohge T, Fernie AR, Braun HP, Hildebrandt TM.

PLoS One. 2018 Aug 9;13(8):e0202153. doi: 10.1371/journal.pone.0202153. eCollection 2018.

33.

Toward multifaceted roles of sucrose in the regulation of stomatal movement.

Lima VF, Medeiros DB, Dos Anjos L, Gago J, Fernie AR, Daloso DM.

Plant Signal Behav. 2018;13(8):e1494468. doi: 10.1080/15592324.2018.1494468. Epub 2018 Aug 1.

PMID:
30067434
34.

Modulation of auxin signalling through DIAGETROPICA and ENTIRE differentially affects tomato plant growth via changes in photosynthetic and mitochondrial metabolism.

Batista-Silva W, Medeiros DB, Rodrigues-Salvador A, Daloso DM, Omena-Garcia RP, Oliveira FS, Pino LE, Peres LEP, Nunes-Nesi A, Fernie AR, Zsögön A, Araújo WL.

Plant Cell Environ. 2019 Feb;42(2):448-465. doi: 10.1111/pce.13413. Epub 2018 Oct 3.

PMID:
30066402
35.

Cucumber ovaries inhibited by dominant fruit express a dynamic developmental program, distinct from either senescence-determined or fruit-setting ovaries.

Shnaider Y, Mitra D, Miller G, Baniel A, Doniger T, Kuhalskaya A, Scossa F, Fernie AR, Brotman Y, Perl-Treves R.

Plant J. 2018 Nov;96(3):651-669. doi: 10.1111/tpj.14051. Epub 2018 Sep 8.

PMID:
30058228
36.

Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation.

Zhang Y, Zhang Y, McFarlane HE, Obata T, Richter AS, Lohse M, Grimm B, Persson S, Fernie AR, Giavalisco P.

Plant Physiol. 2018 Sep;178(1):101-117. doi: 10.1104/pp.18.00684. Epub 2018 Jul 26.

37.

Remote Control of Transpiration via ABA.

Yoshida T, Fernie AR.

Trends Plant Sci. 2018 Sep;23(9):755-758. doi: 10.1016/j.tplants.2018.07.001. Epub 2018 Jul 23.

PMID:
30037653
38.

Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas.

Kong F, Burlacot A, Liang Y, Légeret B, Alseekh S, Brotman Y, Fernie AR, Krieger-Liszkay A, Beisson F, Peltier G, Li-Beisson Y.

Plant Cell. 2018 Aug;30(8):1824-1847. doi: 10.1105/tpc.18.00361. Epub 2018 Jul 11.

39.

Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato.

Garbowicz K, Liu Z, Alseekh S, Tieman D, Taylor M, Kuhalskaya A, Ofner I, Zamir D, Klee HJ, Fernie AR, Brotman Y.

Mol Plant. 2018 Sep 10;11(9):1147-1165. doi: 10.1016/j.molp.2018.06.003. Epub 2018 Jun 28.

PMID:
29960108
40.

Discriminating the Function(s) of Guard Cell ALMT Channels.

Medeiros DB, Fernie AR, Araújo WL.

Trends Plant Sci. 2018 Aug;23(8):649-651. doi: 10.1016/j.tplants.2018.06.006. Epub 2018 Jun 21.

PMID:
29937128
41.

Defining the convergence of ethylene and auxin signaling in tomato.

Fernie AR, Alseekh S.

New Phytol. 2018 Jul;219(2):479-481. doi: 10.1111/nph.15251. No abstract available.

PMID:
29927493
42.

On the role of the tricarboxylic acid cycle in plant productivity.

Zhang Y, Fernie AR.

J Integr Plant Biol. 2018 Dec;60(12):1199-1216. doi: 10.1111/jipb.12690. Epub 2018 Sep 12. Review.

PMID:
29917310
43.

The Effect of Single and Multiple SERAT Mutants on Serine and Sulfur Metabolism.

Watanabe M, Tohge T, Fernie AR, Hoefgen R.

Front Plant Sci. 2018 May 28;9:702. doi: 10.3389/fpls.2018.00702. eCollection 2018.

44.

Tecia solanivora infestation increases tuber starch accumulation in Pastusa Suprema potatoes.

Kumar P, Garrido E, Zhao K, Zheng Y, Alseekh S, Vargas-Ortiz E, Fernie AR, Fei Z, Poveda K, Jander G.

J Integr Plant Biol. 2018 Nov;60(11):1083-1096. doi: 10.1111/jipb.12675. Epub 2018 Aug 15.

PMID:
29888549
45.

The role of dynamic enzyme assemblies and substrate channelling in metabolic regulation.

Sweetlove LJ, Fernie AR.

Nat Commun. 2018 May 30;9(1):2136. doi: 10.1038/s41467-018-04543-8. Review.

46.

Corrigendum: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection.

Avin-Wittenberg T, Baluška F, Bozhkov PV, Elander PH, Fernie AR, Galili G, Hassan A, Hofius D, Isono E, Le Bars R, Masclaux-Daubresse C, Minina EA, Peled-Zehavi H, Coll NS, Sandalio LM, Satiat-Jeunemaitre B, Sirko A, Testillano PS, Batoko H.

J Exp Bot. 2018 May 25;69(12):3173. doi: 10.1093/jxb/ery113. No abstract available.

PMID:
29846673
47.

The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants.

Scossa F, Benina M, Alseekh S, Zhang Y, Fernie AR.

Planta Med. 2018 Aug;84(12-13):855-873. doi: 10.1055/a-0630-1899. Epub 2018 May 29. Review.

PMID:
29843183
48.

The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions.

Zhang Y, Swart C, Alseekh S, Scossa F, Jiang L, Obata T, Graf A, Fernie AR.

Plant Physiol. 2018 Jul;177(3):966-979. doi: 10.1104/pp.17.01687. Epub 2018 May 23.

49.

Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant.

Durgud M, Gupta S, Ivanov I, Omidbakhshfard MA, Benina M, Alseekh S, Staykov N, Hauenstein M, Dijkwel PP, Hörtensteiner S, Toneva V, Brotman Y, Fernie AR, Mueller-Roeber B, Gechev TS.

Plant Physiol. 2018 Jul;177(3):1319-1338. doi: 10.1104/pp.18.00055. Epub 2018 May 22.

50.

Acquisition of Volatile Compounds by Gas Chromatography-Mass Spectrometry (GC-MS).

Vallarino JG, Erban A, Fehrle I, Fernie AR, Kopka J, Osorio S.

Methods Mol Biol. 2018;1778:225-239. doi: 10.1007/978-1-4939-7819-9_16.

PMID:
29761442

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