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Items: 15

1.

Pluripotency and the origin of animal multicellularity.

Sogabe S, Hatleberg WL, Kocot KM, Say TE, Stoupin D, Roper KE, Fernandez-Valverde SL, Degnan SM, Degnan BM.

Nature. 2019 Jun 12. doi: 10.1038/s41586-019-1290-4. [Epub ahead of print]

PMID:
31189954
2.

Metatranscriptomics and nitrogen fixation from the rhizoplane of maize plantlets inoculated with a group of PGPRs.

Gómez-Godínez LJ, Fernandez-Valverde SL, Martinez Romero JC, Martínez-Romero E.

Syst Appl Microbiol. 2019 May 22. pii: S0723-2020(19)30118-3. doi: 10.1016/j.syapm.2019.05.003. [Epub ahead of print]

PMID:
31176475
3.

Diverse RNA interference strategies in early-branching metazoans.

Calcino AD, Fernandez-Valverde SL, Taft RJ, Degnan BM.

BMC Evol Biol. 2018 Nov 1;18(1):160. doi: 10.1186/s12862-018-1274-2.

4.

Inference of Developmental Gene Regulatory Networks Beyond Classical Model Systems: New Approaches in the Post-genomic Era.

Fernandez-Valverde SL, Aguilera F, Ramos-Díaz RA.

Integr Comp Biol. 2018 Oct 1;58(4):640-653. doi: 10.1093/icb/icy061. Review.

PMID:
29917089
5.

Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity.

Gaiti F, Jindrich K, Fernandez-Valverde SL, Roper KE, Degnan BM, Tanurdžić M.

Elife. 2017 Apr 11;6. pii: e22194. doi: 10.7554/eLife.22194.

6.

The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest.

Hall MR, Kocot KM, Baughman KW, Fernandez-Valverde SL, Gauthier MEA, Hatleberg WL, Krishnan A, McDougall C, Motti CA, Shoguchi E, Wang T, Xiang X, Zhao M, Bose U, Shinzato C, Hisata K, Fujie M, Kanda M, Cummins SF, Satoh N, Degnan SM, Degnan BM.

Nature. 2017 Apr 5;544(7649):231-234. doi: 10.1038/nature22033.

PMID:
28379940
7.

Bilaterian-like promoters in the highly compact Amphimedon queenslandica genome.

Fernandez-Valverde SL, Degnan BM.

Sci Rep. 2016 Mar 2;6:22496. doi: 10.1038/srep22496.

8.

The mid-developmental transition and the evolution of animal body plans.

Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I.

Nature. 2016 Mar 31;531(7596):637-641. doi: 10.1038/nature16994. Epub 2016 Feb 17.

9.

Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity.

Gaiti F, Fernandez-Valverde SL, Nakanishi N, Calcino AD, Yanai I, Tanurdzic M, Degnan BM.

Mol Biol Evol. 2015 Sep;32(9):2367-82. doi: 10.1093/molbev/msv117. Epub 2015 May 14.

10.

Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica.

Fernandez-Valverde SL, Calcino AD, Degnan BM.

BMC Genomics. 2015 May 15;16:387. doi: 10.1186/s12864-015-1588-z.

11.

BLIND ordering of large-scale transcriptomic developmental timecourses.

Anavy L, Levin M, Khair S, Nakanishi N, Fernandez-Valverde SL, Degnan BM, Yanai I.

Development. 2014 Mar;141(5):1161-6. doi: 10.1242/dev.105288. Epub 2014 Feb 6.

12.

SOX9 regulates microRNA miR-202-5p/3p expression during mouse testis differentiation.

Wainwright EN, Jorgensen JS, Kim Y, Truong V, Bagheri-Fam S, Davidson T, Svingen T, Fernandez-Valverde SL, McClelland KS, Taft RJ, Harley VR, Koopman P, Wilhelm D.

Biol Reprod. 2013 Aug 15;89(2):34. doi: 10.1095/biolreprod.113.110155. Print 2013 Aug.

PMID:
23843232
13.

MicroRNAs-140-5p/140-3p modulate Leydig cell numbers in the developing mouse testis.

Rakoczy J, Fernandez-Valverde SL, Glazov EA, Wainwright EN, Sato T, Takada S, Combes AN, Korbie DJ, Miller D, Grimmond SM, Little MH, Asahara H, Mattick JS, Taft RJ, Wilhelm D.

Biol Reprod. 2013 Jun 6;88(6):143. doi: 10.1095/biolreprod.113.107607. Print 2013 Jun.

PMID:
23616593
14.

MicroRNAs in β-cell biology, insulin resistance, diabetes and its complications.

Fernandez-Valverde SL, Taft RJ, Mattick JS.

Diabetes. 2011 Jul;60(7):1825-31. doi: 10.2337/db11-0171. Review. No abstract available.

15.

Dynamic isomiR regulation in Drosophila development.

Fernandez-Valverde SL, Taft RJ, Mattick JS.

RNA. 2010 Oct;16(10):1881-8. doi: 10.1261/rna.2379610. Epub 2010 Aug 30.

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