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Items: 25

1.

DNA hypermethylation is associated with invasive phenotype of malignant melanoma.

Koroknai V, Szász I, Hernandez-Vargas H, Fernandez-Jimenez N, Cuenin C, Herceg Z, Vízkeleti L, Ádány R, Ecsedi S, Balázs M.

Exp Dermatol. 2019 Oct 11. doi: 10.1111/exd.14047. [Epub ahead of print]

PMID:
31602702
2.

Combined Analysis of Methylation and Gene Expression Profiles in Separate Compartments of Small Bowel Mucosa Identified Celiac Disease Patients' Signatures.

Cielo D, Galatola M, Fernandez-Jimenez N, De Leo L, Garcia-Etxebarria K, Loganes C, Tommasini A, Not T, Auricchio R, Greco L, Bilbao JR.

Sci Rep. 2019 Jul 10;9(1):10020. doi: 10.1038/s41598-019-46468-2.

3.

Comparison of Illumina 450K and EPIC arrays in placental DNA methylation.

Fernandez-Jimenez N, Allard C, Bouchard L, Perron P, Bustamante M, Bilbao JR, Hivert MF.

Epigenetics. 2019 Dec;14(12):1177-1182. doi: 10.1080/15592294.2019.1634975. Epub 2019 Jun 28.

PMID:
31250700
4.
5.

MethylCal: Bayesian calibration of methylation levels.

Ochoa E, Zuber V, Fernandez-Jimenez N, Bilbao JR, Clark GR, Maher ER, Bottolo L.

Nucleic Acids Res. 2019 Aug 22;47(14):e81. doi: 10.1093/nar/gkz325.

6.

The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region.

Fernandez-Jimenez N, Garcia-Etxebarria K, Plaza-Izurieta L, Romero-Garmendia I, Jauregi-Miguel A, Legarda M, Ecsedi S, Castellanos-Rubio A, Cahais V, Cuenin C, Degli Esposti D, Irastorza I, Hernandez-Vargas H, Herceg Z, Bilbao JR.

Sci Rep. 2019 Feb 4;9(1):1298. doi: 10.1038/s41598-018-37746-6.

7.

Transcription Factor Binding Site Enrichment Analysis in Co-Expression Modules in Celiac Disease.

Romero-Garmendia I, Garcia-Etxebarria K, Hernandez-Vargas H, Santin I, Jauregi-Miguel A, Plaza-Izurieta L, Cros MP, Legarda M, Irastorza I, Herceg Z, Fernandez-Jimenez N, Bilbao JR.

Genes (Basel). 2018 May 10;9(5). pii: E245. doi: 10.3390/genes9050245.

8.

Celiac Diasease-associated lncRNA Named HCG14 Regulates NOD1 Expression in Intestinal Cells.

Santin I, Jauregi-Miguel A, Velayos T, Castellanos-Rubio A, Garcia-Etxebarria K, Romero-Garmendia I, Fernandez-Jimenez N, Irastorza I, Castaño L, Bilbao JR.

J Pediatr Gastroenterol Nutr. 2018 Aug;67(2):225-231. doi: 10.1097/MPG.0000000000001970.

PMID:
29601440
9.

Genome-wide profiling of normal gastric mucosa identifies Helicobacter pylori- and cancer-associated DNA methylome changes.

Woo HD, Fernandez-Jimenez N, Ghantous A, Degli Esposti D, Cuenin C, Cahais V, Choi IJ, Kim YI, Kim J, Herceg Z.

Int J Cancer. 2018 Aug 1;143(3):597-609. doi: 10.1002/ijc.31381. Epub 2018 Apr 6.

10.

Lowly methylated region analysis identifies EBF1 as a potential epigenetic modifier in breast cancer.

Fernandez-Jimenez N, Sklias A, Ecsedi S, Cahais V, Degli-Esposti D, Jay A, Ancey PB, Woo HD, Hernandez-Vargas H, Herceg Z.

Epigenetics. 2017;12(11):964-972. doi: 10.1080/15592294.2017.1373919. Epub 2017 Nov 10.

11.

Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas.

Degli Esposti D, Sklias A, Lima SC, Beghelli-de la Forest Divonne S, Cahais V, Fernandez-Jimenez N, Cros MP, Ecsedi S, Cuenin C, Bouaoun L, Byrnes G, Accardi R, Sudaka A, Giordanengo V, Hernandez-Vargas H, Pinto LF, Van Obberghen-Schilling E, Herceg Z.

Genome Med. 2017 Apr 5;9(1):33. doi: 10.1186/s13073-017-0419-z.

12.

A long noncoding RNA associated with susceptibility to celiac disease.

Castellanos-Rubio A, Fernandez-Jimenez N, Kratchmarov R, Luo X, Bhagat G, Green PH, Schneider R, Kiledjian M, Bilbao JR, Ghosh S.

Science. 2016 Apr 1;352(6281):91-5. doi: 10.1126/science.aad0467.

13.

Identification of novel long non-coding RNAs deregulated in hepatocellular carcinoma using RNA-sequencing.

Esposti DD, Hernandez-Vargas H, Voegele C, Fernandez-Jimenez N, Forey N, Bancel B, Le Calvez-Kelm F, McKay J, Merle P, Herceg Z.

Oncotarget. 2016 May 31;7(22):31862-77. doi: 10.18632/oncotarget.7364.

14.

Patterns of somatic uniparental disomy identify novel tumor suppressor genes in colorectal cancer.

Torabi K, Miró R, Fernández-Jiménez N, Quintanilla I, Ramos L, Prat E, del Rey J, Pujol N, Killian JK, Meltzer PS, Fernández PL, Ried T, Lozano JJ, Camps J, Ponsa I.

Carcinogenesis. 2015 Oct;36(10):1103-10. doi: 10.1093/carcin/bgv115. Epub 2015 Aug 4.

15.

Expression analysis in intestinal mucosa reveals complex relations among genes under the association peaks in celiac disease.

Plaza-Izurieta L, Fernandez-Jimenez N, Irastorza I, Jauregi-Miguel A, Romero-Garmendia I, Vitoria JC, Bilbao JR.

Eur J Hum Genet. 2015 Aug;23(8):1100-5. doi: 10.1038/ejhg.2014.244. Epub 2014 Nov 12.

16.

Alteration of tight junction gene expression in celiac disease.

Jauregi-Miguel A, Fernandez-Jimenez N, Irastorza I, Plaza-Izurieta L, Vitoria JC, Bilbao JR.

J Pediatr Gastroenterol Nutr. 2014 Jun;58(6):762-7. doi: 10.1097/MPG.0000000000000338.

PMID:
24552675
17.

Detection of atomic scale changes in the free volume void size of three-dimensional colorectal cancer cell culture using positron annihilation lifetime spectroscopy.

Axpe E, Lopez-Euba T, Castellanos-Rubio A, Merida D, Garcia JA, Plaza-Izurieta L, Fernandez-Jimenez N, Plazaola F, Bilbao JR.

PLoS One. 2014 Jan 2;9(1):e83838. doi: 10.1371/journal.pone.0083838. eCollection 2014.

18.

Coregulation and modulation of NFκB-related genes in celiac disease: uncovered aspects of gut mucosal inflammation.

Fernandez-Jimenez N, Castellanos-Rubio A, Plaza-Izurieta L, Irastorza I, Elcoroaristizabal X, Jauregi-Miguel A, Lopez-Euba T, Tutau C, de Pancorbo MM, Vitoria JC, Bilbao JR.

Hum Mol Genet. 2014 Mar 1;23(5):1298-310. doi: 10.1093/hmg/ddt520. Epub 2013 Oct 24.

19.

THEMIS and PTPRK in celiac intestinal mucosa: coexpression in disease and after in vitro gliadin challenge.

Bondar C, Plaza-Izurieta L, Fernandez-Jimenez N, Irastorza I, Withoff S, Wijmenga C, Chirdo F, Bilbao JR; CEGEC.

Eur J Hum Genet. 2014 Mar;22(3):358-62. doi: 10.1038/ejhg.2013.136. Epub 2013 Jul 3.

20.

Cubic regression-based degree of correction predicts the performance of whole bisulfitome amplified DNA methylation analysis.

Fernandez-Jimenez N, Plaza-Izurieta L, Lopez-Euba T, Jauregi-Miguel A, Ramon Bilbao J.

Epigenetics. 2012 Dec 1;7(12):1349-54. doi: 10.4161/epi.22846. Epub 2012 Nov 15.

21.

Accuracy in copy number calling by qPCR and PRT: a matter of DNA.

Fernandez-Jimenez N, Castellanos-Rubio A, Plaza-Izurieta L, Gutierrez G, Irastorza I, Castaño L, Vitoria JC, Bilbao JR.

PLoS One. 2011;6(12):e28910. doi: 10.1371/journal.pone.0028910. Epub 2011 Dec 13.

22.

Angiogenesis-related gene expression analysis in celiac disease.

Castellanos-Rubio A, Caja S, Irastorza I, Fernandez-Jimenez N, Plaza-Izurieta L, Vitoria JC, Maki M, Lindfors K, Bilbao JR.

Autoimmunity. 2012 May;45(3):264-70. doi: 10.3109/08916934.2011.637531. Epub 2012 Jan 9.

PMID:
22136669
23.

Upregulation of KIR3DL1 gene expression in intestinal mucosa in active celiac disease.

Fernandez-Jimenez N, Santín I, Irastorza I, Plaza-Izurieta L, Castellanos-Rubio A, Vitoria JC, Bilbao JR.

Hum Immunol. 2011 Aug;72(8):617-20. doi: 10.1016/j.humimm.2011.04.008. Epub 2011 May 13.

PMID:
21616111
24.

Revisiting genome wide association studies (GWAS) in coeliac disease: replication study in Spanish population and expression analysis of candidate genes.

Plaza-Izurieta L, Castellanos-Rubio A, Irastorza I, Fernández-Jimenez N, Gutierrez G; CEGEC, Bilbao JR.

J Med Genet. 2011 Jul;48(7):493-6. doi: 10.1136/jmg.2011.089714. Epub 2011 Apr 13.

PMID:
21490378
25.

Analysis of beta-defensin and Toll-like receptor gene copy number variation in celiac disease.

Fernandez-Jimenez N, Castellanos-Rubio A, Plaza-Izurieta L, Gutierrez G, Castaño L, Vitoria JC, Bilbao JR.

Hum Immunol. 2010 Aug;71(8):833-6. doi: 10.1016/j.humimm.2010.05.012. Epub 2010 May 17.

PMID:
20483368

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