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Items: 8

1.

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.

Waese J, Fan J, Pasha A, Yu H, Fucile G, Shi R, Cumming M, Kelley LA, Sternberg MJ, Krishnakumar V, Ferlanti E, Miller J, Town C, Stuerzlinger W, Provart NJ.

Plant Cell. 2017 Aug;29(8):1806-1821. doi: 10.1105/tpc.17.00073. Epub 2017 Aug 14.

2.

ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery.

Krishnakumar V, Contrino S, Cheng CY, Belyaeva I, Ferlanti ES, Miller JR, Vaughn MW, Micklem G, Town CD, Chan AP.

Plant Cell Physiol. 2017 Jan 1;58(1):e4. doi: 10.1093/pcp/pcw200.

PMID:
28013278
3.

Araport: the Arabidopsis information portal.

Krishnakumar V, Hanlon MR, Contrino S, Ferlanti ES, Karamycheva S, Kim M, Rosen BD, Cheng CY, Moreira W, Mock SA, Stubbs J, Sullivan JM, Krampis K, Miller JR, Micklem G, Vaughn M, Town CD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1003-9. doi: 10.1093/nar/gku1200. Epub 2014 Nov 20.

4.

A Multilocus Sequence Typing System (MLST) reveals a high level of diversity and a genetic component to Entamoeba histolytica virulence.

Gilchrist CA, Ali IK, Kabir M, Alam F, Scherbakova S, Ferlanti E, Weedall GD, Hall N, Haque R, Petri WA Jr, Caler E.

BMC Microbiol. 2012 Jul 27;12:151. doi: 10.1186/1471-2180-12-151.

5.

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R.

BMC Bioinformatics. 2008 Dec 9;9:529. doi: 10.1186/1471-2105-9-529.

6.

WebBLAST 2.0: an integrated solution for organizing and analyzing sequence data.

Ferlanti ES, Ryan JF, Makalowska I, Baxevanis AD.

Bioinformatics. 1999 May;15(5):422-3.

PMID:
10366662
7.

The Homeodomain Resource: sequences, structures and genomic information.

Banerjee-Basu S, Ferlanti ES, Ryan JF, Baxevanis AD.

Nucleic Acids Res. 1999 Jan 1;27(1):336-7.

8.

Histone Sequence Database: sequences, structures, post-translational modifications and genetic loci.

Makalowska I, Ferlanti ES, Baxevanis AD, Landsman D.

Nucleic Acids Res. 1999 Jan 1;27(1):323-4.

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