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Multi-Omic Analysis of the Microbiome and Metabolome in Healthy Subjects Reveals Microbiome-Dependent Relationships Between Diet and Metabolites.

Tang ZZ, Chen G, Hong Q, Huang S, Smith HM, Shah RD, Scholz M, Ferguson JF.

Front Genet. 2019 May 17;10:454. doi: 10.3389/fgene.2019.00454. eCollection 2019.


High dietary salt-induced dendritic cell activation underlies microbial dysbiosis-associated hypertension.

Ferguson JF, Aden LA, Barbaro NR, Van Beusecum JP, Xiao L, Simmons AJ, Warden C, Pasic L, Himmel LE, Washington MK, Revetta FL, Zhao S, Kumaresan S, Scholz MB, Tang Z, Chen G, Reilly MP, Kirabo A.

JCI Insight. 2019 Jun 4;5. pii: 126241. doi: 10.1172/jci.insight.126241.


Heart Disease and Stroke Statistics-2019 Update: A Report From the American Heart Association.

Benjamin EJ, Muntner P, Alonso A, Bittencourt MS, Callaway CW, Carson AP, Chamberlain AM, Chang AR, Cheng S, Das SR, Delling FN, Djousse L, Elkind MSV, Ferguson JF, Fornage M, Jordan LC, Khan SS, Kissela BM, Knutson KL, Kwan TW, Lackland DT, Lewis TT, Lichtman JH, Longenecker CT, Loop MS, Lutsey PL, Martin SS, Matsushita K, Moran AE, Mussolino ME, O'Flaherty M, Pandey A, Perak AM, Rosamond WD, Roth GA, Sampson UKA, Satou GM, Schroeder EB, Shah SH, Spartano NL, Stokes A, Tirschwell DL, Tsao CW, Turakhia MP, VanWagner LB, Wilkins JT, Wong SS, Virani SS; American Heart Association Council on Epidemiology and Prevention Statistics Committee and Stroke Statistics Subcommittee.

Circulation. 2019 Mar 5;139(10):e56-e528. doi: 10.1161/CIR.0000000000000659. No abstract available.


Probing the Virtual Proteome to Identify Novel Disease Biomarkers.

Mosley JD, Benson MD, Smith JG, Melander O, Ngo D, Shaffer CM, Ferguson JF, Herzig MS, McCarty CA, Chute CG, Jarvik GP, Gordon AS, Palmer MR, Crosslin DR, Larson EB, Carrell DS, Kullo IJ, Pacheco JA, Peissig PL, Brilliant MH, Kitchner TE, Linneman JG, Namjou B, Williams MS, Ritchie MD, Borthwick KM, Kiryluk K, Mentch FD, Sleiman PM, Karlson EW, Verma SS, Zhu Y, Vasan RS, Yang Q, Denny JC, Roden DM, Gerszten RE, Wang TJ.

Circulation. 2018 Nov 27;138(22):2469-2481. doi: 10.1161/CIRCULATIONAHA.118.036063.


Tissue-Specific Differential Expression of Novel Genes and Long Intergenic Noncoding RNAs in Humans With Extreme Response to Evoked Endotoxemia.

Ferguson JF, Xue C, Gao Y, Tian T, Shi J, Zhang X, Wang Y, Li YD, Wei Z, Li M, Zhang H, Reilly MP.

Circ Genom Precis Med. 2018 Nov;11(11):e001907. doi: 10.1161/CIRCGEN.117.001907.


Development of the Gut Microbiome in Children, and Lifetime Implications for Obesity and Cardiometabolic Disease.

Mohammadkhah AI, Simpson EB, Patterson SG, Ferguson JF.

Children (Basel). 2018 Nov 27;5(12). pii: E160. doi: 10.3390/children5120160. Review.


Omega-3 polyunsaturated fatty acids attenuate inflammatory activation and alter differentiation in human adipocytes.

Ferguson JF, Roberts-Lee K, Borcea C, Smith HM, Midgette Y, Shah R.

J Nutr Biochem. 2019 Feb;64:45-49. doi: 10.1016/j.jnutbio.2018.09.027. Epub 2018 Oct 11.


Relationship between very low low-density lipoprotein cholesterol concentrations not due to statin therapy and risk of type 2 diabetes: A US-based cross-sectional observational study using electronic health records.

Feng Q, Wei WQ, Chung CP, Levinson RT, Sundermann AC, Mosley JD, Bastarache L, Ferguson JF, Cox NJ, Roden DM, Denny JC, Linton MF, Edwards DRV, Stein CM.

PLoS Med. 2018 Aug 28;15(8):e1002642. doi: 10.1371/journal.pmed.1002642. eCollection 2018 Aug.


Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of linc-ADAL in adipocyte metabolism.

Zhang X, Xue C, Lin J, Ferguson JF, Weiner A, Liu W, Han Y, Hinkle C, Li W, Jiang H, Gosai S, Hachet M, Garcia BA, Gregory BD, Soccio RE, Hogenesch JB, Seale P, Li M, Reilly MP.

Sci Transl Med. 2018 Jun 20;10(446). pii: eaar5987. doi: 10.1126/scitranslmed.aar5987.


Interdisciplinary Models for Research and Clinical Endeavors in Genomic Medicine: A Scientific Statement From the American Heart Association.

Musunuru K, Arora P, Cooke JP, Ferguson JF, Hershberger RE, Hickey KT, Lee JM, Lima JAC, Loscalzo J, Pereira NL, Russell MW, Shah SH, Sheikh F, Wang TJ, MacRae CA; American Heart Association Council on Genomic and Precision Medicine; Council on Cardiovascular Disease in the Young; Council on Cardiovascular and Stroke Nursing; Council on Cardiovascular Radiology and Intervention; Council on Peripheral Vascular Disease; Council on Quality of Care and Outcomes Research; and Stroke Council.

Circ Genom Precis Med. 2018 Jun;11(6):e000046. doi: 10.1161/HCG.0000000000000046. Review.


Acute effects of insulin on circulating natriuretic peptide levels in humans.

Bachmann KN, Deger SM, Alsouqi A, Huang S, Xu M, Ferguson JF, Su YR, Niswender KD, Ikizler TA, Wang TJ.

PLoS One. 2018 May 14;13(5):e0196869. doi: 10.1371/journal.pone.0196869. eCollection 2018.


Heart Disease and Stroke Statistics-2018 Update: A Report From the American Heart Association.

Benjamin EJ, Virani SS, Callaway CW, Chamberlain AM, Chang AR, Cheng S, Chiuve SE, Cushman M, Delling FN, Deo R, de Ferranti SD, Ferguson JF, Fornage M, Gillespie C, Isasi CR, Jiménez MC, Jordan LC, Judd SE, Lackland D, Lichtman JH, Lisabeth L, Liu S, Longenecker CT, Lutsey PL, Mackey JS, Matchar DB, Matsushita K, Mussolino ME, Nasir K, O'Flaherty M, Palaniappan LP, Pandey A, Pandey DK, Reeves MJ, Ritchey MD, Rodriguez CJ, Roth GA, Rosamond WD, Sampson UKA, Satou GM, Shah SH, Spartano NL, Tirschwell DL, Tsao CW, Voeks JH, Willey JZ, Wilkins JT, Wu JH, Alger HM, Wong SS, Muntner P; American Heart Association Council on Epidemiology and Prevention Statistics Committee and Stroke Statistics Subcommittee.

Circulation. 2018 Mar 20;137(12):e67-e492. doi: 10.1161/CIR.0000000000000558. Epub 2018 Jan 31. Review. No abstract available. Erratum in: Circulation. 2018 Mar 20;137(12 ):e493.


Synergistic Modulation of Inflammatory but not Metabolic Effects of High-Fat Feeding by CCR2 and CX3CR1.

Zhang H, Hinkle CC, O'Neill SM, Shi J, Caughey J, Lynch E, Lynch G, Gerelus M, Tsai ASD, Shah R, Ferguson JF, Ahima RS, Reilly MP.

Obesity (Silver Spring). 2017 Aug;25(8):1410-1420. doi: 10.1002/oby.21900. Epub 2017 Jun 26.


Loss of Cardioprotective Effects at the ADAMTS7 Locus as a Result of Gene-Smoking Interactions.

Saleheen D, Zhao W, Young R, Nelson CP, Ho W, Ferguson JF, Rasheed A, Ou K, Nurnberg ST, Bauer RC, Goel A, Do R, Stewart AFR, Hartiala J, Zhang W, Thorleifsson G, Strawbridge RJ, Sinisalo J, Kanoni S, Sedaghat S, Marouli E, Kristiansson K, Hua Zhao J, Scott R, Gauguier D, Shah SH, Smith AV, van Zuydam N, Cox AJ, Willenborg C, Kessler T, Zeng L, Province MA, Ganna A, Lind L, Pedersen NL, White CC, Joensuu A, Edi Kleber M, Hall AS, März W, Salomaa V, O'Donnell C, Ingelsson E, Feitosa MF, Erdmann J, Bowden DW, Palmer CNA, Gudnason V, Faire U, Zalloua P, Wareham N, Thompson JR, Kuulasmaa K, Dedoussis G, Perola M, Dehghan A, Chambers JC, Kooner J, Allayee H, Deloukas P, McPherson R, Stefansson K, Schunkert H, Kathiresan S, Farrall M, Marcel Frossard P, Rader DJ, Samani NJ, Reilly MP.

Circulation. 2017 Jun 13;135(24):2336-2353. doi: 10.1161/CIRCULATIONAHA.116.022069. Epub 2017 May 1.


De novo RNA sequence assembly during in vivo inflammatory stress reveals hundreds of unannotated lincRNAs in human blood CD14+ monocytes and in adipose tissue.

Xue C, Zhang X, Zhang H, Ferguson JF, Wang Y, Hinkle CC, Li M, Reilly MP.

Physiol Genomics. 2017 Jun 1;49(6):287-305. doi: 10.1152/physiolgenomics.00001.2017. Epub 2017 Apr 7.


Expression of Calgranulin Genes S100A8, S100A9 and S100A12 Is Modulated by n-3 PUFA during Inflammation in Adipose Tissue and Mononuclear Cells.

Shah RD, Xue C, Zhang H, Tuteja S, Li M, Reilly MP, Ferguson JF.

PLoS One. 2017 Jan 26;12(1):e0169614. doi: 10.1371/journal.pone.0169614. eCollection 2017.


Sedentary Behavior and Cardiovascular Morbidity and Mortality: A Science Advisory From the American Heart Association.

Young DR, Hivert MF, Alhassan S, Camhi SM, Ferguson JF, Katzmarzyk PT, Lewis CE, Owen N, Perry CK, Siddique J, Yong CM; Physical Activity Committee of the Council on Lifestyle and Cardiometabolic Health; Council on Clinical Cardiology; Council on Epidemiology and Prevention; Council on Functional Genomics and Translational Biology; and Stroke Council.

Circulation. 2016 Sep 27;134(13):e262-79. doi: 10.1161/CIR.0000000000000440. Epub 2016 Aug 15. Review.


Nutrigenomics, the Microbiome, and Gene-Environment Interactions: New Directions in Cardiovascular Disease Research, Prevention, and Treatment: A Scientific Statement From the American Heart Association.

Ferguson JF, Allayee H, Gerszten RE, Ideraabdullah F, Kris-Etherton PM, Ordovás JM, Rimm EB, Wang TJ, Bennett BJ; American Heart Association Council on Functional Genomics and Translational Biology, Council on Epidemiology and Prevention, and Stroke Council.

Circ Cardiovasc Genet. 2016 Jun;9(3):291-313. doi: 10.1161/HCG.0000000000000030. Epub 2016 Apr 19. Review.


Adipose tissue RNASeq reveals novel gene-nutrient interactions following n-3 PUFA supplementation and evoked inflammation in humans.

Ferguson JF, Xue C, Hu Y, Li M, Reilly MP.

J Nutr Biochem. 2016 Apr;30:126-32. doi: 10.1016/j.jnutbio.2015.12.010. Epub 2016 Jan 11.


Branched-Chain Amino Acids and Cardiovascular Disease: Does Diet Matter?

Ferguson JF, Wang TJ.

Clin Chem. 2016 Apr;62(4):545-7. doi: 10.1373/clinchem.2016.254318. Epub 2016 Feb 16. No abstract available.


Bioactive products formed in humans from fish oils.

Skarke C, Alamuddin N, Lawson JA, Li X, Ferguson JF, Reilly MP, FitzGerald GA.

J Lipid Res. 2015 Sep;56(9):1808-20. doi: 10.1194/jlr.M060392. Epub 2015 Jul 15.


Activation of innate immunity modulates insulin sensitivity, glucose effectiveness and pancreatic β-cell function in both African ancestry and European ancestry healthy humans.

Ferguson JF, Shah RY, Shah R, Mehta NN, Rickels MR, Reilly MP.

Metabolism. 2015 Apr;64(4):513-520. doi: 10.1016/j.metabol.2014.12.007. Epub 2014 Dec 26.


Human experimental endotoxemia in modeling the pathophysiology, genomics, and therapeutics of innate immunity in complex cardiometabolic diseases.

Patel PN, Shah RY, Ferguson JF, Reilly MP.

Arterioscler Thromb Vasc Biol. 2015 Mar;35(3):525-34. doi: 10.1161/ATVBAHA.114.304455. Epub 2014 Dec 30. Review.


Integrative genomics identifies 7p11.2 as a novel locus for fever and clinical stress response in humans.

Ferguson JF, Meyer NJ, Qu L, Xue C, Liu Y, DerOhannessian SL, Rushefski M, Paschos GK, Tang S, Schadt EE, Li M, Christie JD, Reilly MP.

Hum Mol Genet. 2015 Mar 15;24(6):1801-12. doi: 10.1093/hmg/ddu589. Epub 2014 Nov 20.


PCSK9 is a critical regulator of the innate immune response and septic shock outcome.

Walley KR, Thain KR, Russell JA, Reilly MP, Meyer NJ, Ferguson JF, Christie JD, Nakada TA, Fjell CD, Thair SA, Cirstea MS, Boyd JH.

Sci Transl Med. 2014 Oct 15;6(258):258ra143. doi: 10.1126/scitranslmed.3008782.


Very low density lipoprotein cholesterol associates with coronary artery calcification in type 2 diabetes beyond circulating levels of triglycerides.

Prenner SB, Mulvey CK, Ferguson JF, Rickels MR, Bhatt AB, Reilly MP.

Atherosclerosis. 2014 Oct;236(2):244-50. doi: 10.1016/j.atherosclerosis.2014.07.008. Epub 2014 Jul 22.


A functional synonymous coding variant in the IL1RN gene is associated with survival in septic shock.

Meyer NJ, Ferguson JF, Feng R, Wang F, Patel PN, Li M, Xue C, Qu L, Liu Y, Boyd JH, Russell JA, Christie JD, Walley KR, Reilly MP.

Am J Respir Crit Care Med. 2014 Sep 15;190(6):656-64. doi: 10.1164/rccm.201403-0586OC.


Kinetics modeling predicts bioaugmentation with Sphingomonad cultures as a viable technology for enhanced pharmaceutical and personal care products removal during wastewater treatment.

Zhou NA, Lutovsky AC, Andaker GL, Ferguson JF, Gough HL.

Bioresour Technol. 2014 Aug;166:158-67. doi: 10.1016/j.biortech.2014.05.028. Epub 2014 May 21.


Dietary isoflavone intake is associated with evoked responses to inflammatory cardiometabolic stimuli and improved glucose homeostasis in healthy volunteers.

Ferguson JF, Ryan MF, Gibney ER, Brennan L, Roche HM, Reilly MP.

Nutr Metab Cardiovasc Dis. 2014 Sep;24(9):996-1003. doi: 10.1016/j.numecd.2014.03.010. Epub 2014 Apr 18.


Insulin sensitivity index in type 1 diabetes and following human islet transplantation: comparison of the minimal model to euglycemic clamp measures.

Rickels MR, Kong SM, Fuller C, Dalton-Bakes C, Ferguson JF, Reilly MP, Teff KL, Naji A.

Am J Physiol Endocrinol Metab. 2014 May 15;306(10):E1217-24. doi: 10.1152/ajpendo.00667.2013. Epub 2014 Apr 1.


Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases.

Liu Y, Ferguson JF, Xue C, Ballantyne RL, Silverman IM, Gosai SJ, Serfecz J, Morley MP, Gregory BD, Li M, Reilly MP.

Arterioscler Thromb Vasc Biol. 2014 Apr;34(4):902-12. doi: 10.1161/ATVBAHA.113.303123. Epub 2014 Feb 6.


PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution.

Hu Y, Liu Y, Mao X, Jia C, Ferguson JF, Xue C, Reilly MP, Li H, Li M.

Nucleic Acids Res. 2014 Feb;42(3):e20. doi: 10.1093/nar/gkt1304. Epub 2013 Dec 20.


Characterization of persistent virus-like particles in two acetate-fed methanogenic reactors.

Chien IC, Meschke JS, Gough HL, Ferguson JF.

PLoS One. 2013 Nov 22;8(11):e81040. doi: 10.1371/journal.pone.0081040. eCollection 2013.


Omega-3 PUFA supplementation and the response to evoked endotoxemia in healthy volunteers.

Ferguson JF, Mulvey CK, Patel PN, Shah RY, Doveikis J, Zhang W, Tabita-Martinez J, Terembula K, Eiden M, Koulman A, Griffin JL, Mehta NN, Shah R, Propert KJ, Song WL, Reilly MP.

Mol Nutr Food Res. 2014 Mar;58(3):601-13. doi: 10.1002/mnfr.201300368. Epub 2013 Nov 5.


Improvement in insulin sensitivity after human islet transplantation for type 1 diabetes.

Rickels MR, Kong SM, Fuller C, Dalton-Bakes C, Ferguson JF, Reilly MP, Teff KL, Naji A.

J Clin Endocrinol Metab. 2013 Nov;98(11):E1780-5. doi: 10.1210/jc.2013-1764. Epub 2013 Oct 1.


Impact of geographical region on urinary metabolomic and plasma fatty acid profiles in subjects with the metabolic syndrome across Europe: the LIPGENE study.

Walsh MC, McLoughlin GA, Roche HM, Ferguson JF, Drevon CA, Saris WH, Lovegrove JA, Risérus U, López-Miranda J, Defoort C, Kieć-Wilk B, Brennan L, Gibney MJ.

Br J Nutr. 2014 Feb;111(3):424-31. doi: 10.1017/S0007114513002602. Epub 2013 Sep 19.


Differential associations of oral glucose tolerance test-derived measures of insulin sensitivity and pancreatic β-cell function with coronary artery calcification and microalbuminuria in type 2 diabetes.

Mulvey CK, McNeill AM, Girman CJ, Churchill TW, Terembula K, Ferguson JF, Shah R, Mehta NN, Qasim AN, Rickels MR, Reilly MP.

Diabetes Care. 2014;37(1):124-33. doi: 10.2337/dc12-1880. Epub 2013 Aug 15.


Genetics of coronary artery calcification among African Americans, a meta-analysis.

Wojczynski MK, Li M, Bielak LF, Kerr KF, Reiner AP, Wong ND, Yanek LR, Qu L, White CC, Lange LA, Ferguson JF, He J, Young T, Mosley TH, Smith JA, Kral BG, Guo X, Wong Q, Ganesh SK, Heckbert SR, Griswold ME, O'Leary DH, Budoff M, Carr JJ, Taylor HA Jr, Bluemke DA, Demissie S, Hwang SJ, Paltoo DN, Polak JF, Psaty BM, Becker DM, Province MA, Post WS, O'Donnell CJ, Wilson JG, Harris TB, Kavousi M, Cupples LA, Rotter JI, Fornage M, Becker LC, Peyser PA, Borecki IB, Reilly MP.

BMC Med Genet. 2013 Jul 19;14:75. doi: 10.1186/1471-2350-14-75.


Effects of chloride, sulfate and natural organic matter (NOM) on the accumulation and release of trace-level inorganic contaminants from corroding iron.

Peng CY, Ferguson JF, Korshin GV.

Water Res. 2013 Sep 15;47(14):5257-69. doi: 10.1016/j.watres.2013.06.004. Epub 2013 Jun 14.


Evaluating the impact of sequencing depth on transcriptome profiling in human adipose.

Liu Y, Ferguson JF, Xue C, Silverman IM, Gregory B, Reilly MP, Li M.

PLoS One. 2013 Jun 24;8(6):e66883. doi: 10.1371/journal.pone.0066883. Print 2013.


Meat-loving microbes: do steak-eating bacteria promote atherosclerosis?

Ferguson JF.

Circ Cardiovasc Genet. 2013 Jun;6(3):308-9. doi: 10.1161/CIRCGENETICS.113.000213. No abstract available.


Candidate gene association study of coronary artery calcification in chronic kidney disease: findings from the CRIC study (Chronic Renal Insufficiency Cohort).

Ferguson JF, Matthews GJ, Townsend RR, Raj DS, Kanetsky PA, Budoff M, Fischer MJ, Rosas SE, Kanthety R, Rahman M, Master SR, Qasim A, Li M, Mehta NN, Shen H, Mitchell BD, O'Connell JR, Shuldiner AR, Ho WK, Young R, Rasheed A, Danesh J, He J, Kusek JW, Ojo AO, Flack J, Go AS, Gadegbeku CA, Wright JT Jr, Saleheen D, Feldman HI, Rader DJ, Foulkes AS, Reilly MP; CRIC Study Principal Investigators.

J Am Coll Cardiol. 2013 Aug 27;62(9):789-98. doi: 10.1016/j.jacc.2013.01.103. Epub 2013 May 30.


Effects of blending of desalinated and conventionally treated surface water on iron corrosion and its release from corroding surfaces and pre-existing scales.

Liu H, Schonberger KD, Peng CY, Ferguson JF, Desormeaux E, Meyerhofer P, Luckenbach H, Korshin GV.

Water Res. 2013 Jul 1;47(11):3817-26. doi: 10.1016/j.watres.2013.03.052. Epub 2013 Apr 16.


Race and gender variation in response to evoked inflammation.

Ferguson JF, Patel PN, Shah RY, Mulvey CK, Gadi R, Nijjar PS, Usman HM, Mehta NN, Shah R, Master SR, Propert KJ, Reilly MP.

J Transl Med. 2013 Mar 12;11:63. doi: 10.1186/1479-5876-11-63.


Cultivation and characterization of bacterial isolates capable of degrading pharmaceutical and personal care products for improved removal in activated sludge wastewater treatment.

Zhou NA, Lutovsky AC, Andaker GL, Gough HL, Ferguson JF.

Biodegradation. 2013 Nov;24(6):813-27. doi: 10.1007/s10532-013-9630-9. Epub 2013 Feb 28.


Mixed modeling of meta-analysis P-values (MixMAP) suggests multiple novel gene loci for low density lipoprotein cholesterol.

Foulkes AS, Matthews GJ, Das U, Ferguson JF, Lin R, Reilly MP.

PLoS One. 2013;8(2):e54812. doi: 10.1371/journal.pone.0054812. Epub 2013 Feb 6.


Peroxisome Proliferator-Activated Receptor-α Agonism With Fenofibrate Does Not Suppress Inflammatory Responses to Evoked Endotoxemia.

Mulvey CK, Ferguson JF, Tabita-Martinez J, Kong S, Shah RY, Patel PN, Master SR, Usman MH, Propert KJ, Shah R, Mehta NN, Reilly MP.

J Am Heart Assoc. 2012 Aug;1(4):e002923. doi: 10.1161/JAHA.112.002923. Epub 2012 Aug 24.


Increasing power: multivariate analysis of metabolic networks reveals novel atherosclerosis loci.

Ferguson JF.

Circ Cardiovasc Genet. 2012 Oct 1;5(5):595-6. doi: 10.1161/CIRCGENETICS.112.964882. No abstract available.


Bacterial infective arthritis following a penetrating stick injury of the stifle joint in a dog.

Clarke SP, Ferguson JF.

J Small Anim Pract. 2012 Aug;53(8):483-6. doi: 10.1111/j.1748-5827.2012.01248.x. Epub 2012 Jul 12.


Omics gets personal: integrative profiling of health and disease.

Ferguson JF.

Circ Cardiovasc Genet. 2012 Jun;5(3):381-2. doi: 10.1161/CIRCGENETICS.112.963801. No abstract available.


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