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An Empirical Bayesian ranking method, with applications to high throughput biology.

Ferguson J, Chang J.

Bioinformatics. 2019 Jun 14. pii: btz471. doi: 10.1093/bioinformatics/btz471. [Epub ahead of print]



Ofstead CL, Wetzler HP, Eiland JE, Sonetti DA, Ferguson JS.

Chest. 2019 Jun;155(6):1300. doi: 10.1016/j.chest.2019.01.023. No abstract available.


Multi-Omic Analysis of the Microbiome and Metabolome in Healthy Subjects Reveals Microbiome-Dependent Relationships Between Diet and Metabolites.

Tang ZZ, Chen G, Hong Q, Huang S, Smith HM, Shah RD, Scholz M, Ferguson JF.

Front Genet. 2019 May 17;10:454. doi: 10.3389/fgene.2019.00454. eCollection 2019.


High dietary salt-induced dendritic cell activation underlies microbial dysbiosis-associated hypertension.

Ferguson JF, Aden LA, Barbaro NR, Van Beusecum JP, Xiao L, Simmons AJ, Warden C, Pasic L, Himmel LE, Washington MK, Revetta FL, Zhao S, Kumaresan S, Scholz MB, Tang Z, Chen G, Reilly MP, Kirabo A.

JCI Insight. 2019 Jun 4;5. pii: 126241. doi: 10.1172/jci.insight.126241.


Sequential Immunofluorescence and Immunohistochemistry on Cryosectioned Zebrafish Embryos.

Ferguson JL, Shive HR.

J Vis Exp. 2019 May 14;(147). doi: 10.3791/59344.


Reduced VRE and MRSA colonisation and infection following sustained reduction in broad spectrum antibiotic use in a large tertiary hospital.

Ferguson JK, Munnoch SA, Kozierowski K, Chiu S, Oldmeadow C.

Med J Aust. 2019 Jun 2. doi: 10.5694/mja2.50218. [Epub ahead of print] No abstract available.


The AKI Prediction Score: a new prediction model for acute kidney injury after liver transplantation.

Kalisvaart M, Schlegel A, Umbro I, de Haan JE, Polak WG, IJzermans JN, Mirza DF, Perera MTP, Isaac JR, Ferguson J, Mitterhofer AP, de Jonge J, Muiesan P.

HPB (Oxford). 2019 May 29. pii: S1365-182X(19)30526-X. doi: 10.1016/j.hpb.2019.04.008. [Epub ahead of print]


Study protocol for a randomised controlled trial of carvedilol versus variceal band ligation in primary prevention of variceal bleeding in liver cirrhosis (CALIBRE trial).

Tripathi D, Hayes PC, Richardson P, Rowe I, Ferguson J, Devine P, Mathers J, Poyner C, Jowett S, Handley K, Grant M, Slinn G, Ahmed K, Brocklehurst P.

BMJ Open Gastroenterol. 2019 Apr 25;6(1):e000290. doi: 10.1136/bmjgast-2019-000290. eCollection 2019.


Reforming medical regulation: a qualitative study of the implementation of medical revalidation in England, using Normalization Process Theory.

Tazzyman A, Ferguson J, Boyd A, Bryce M, Tredinnick-Rowe J, Price T, Walshe K.

J Health Serv Res Policy. 2019 May 21:1355819619848017. doi: 10.1177/1355819619848017. [Epub ahead of print]


Inhibition of urothelial carcinoma through targeted type I interferon-mediated immune activation.

Plote D, Choi W, Mokkapati S, Sundi D, Ferguson JE 3rd, Duplisea J, Parker NR, Yla-Herttuala S, Committee SCB, McConkey D, Schluns KS, Dinney CP.

Oncoimmunology. 2019 Feb 20;8(5):e1577125. doi: 10.1080/2162402X.2019.1577125. eCollection 2019.


Brief alcohol intervention for risky drinking in young people aged 14–15 years in secondary schools: the SIPS JR-HIGH RCT.

Giles EL, McGeechan GJ, Coulton S, Deluca P, Drummond C, Howel D, Kaner E, McColl E, McGovern R, Scott S, Stamp E, Sumnall H, Todd L, Vale L, Albani V, Boniface S, Ferguson J, Gilvarry E, Hendrie N, Howe N, Mossop H, Ramsay A, Stanley G, Newbury-Birch D.

Southampton (UK): NIHR Journals Library; 2019 May.


Dysregulation of EMT Drives the Progression to Clinically Aggressive Sarcomatoid Bladder Cancer.

Guo CC, Majewski T, Zhang L, Yao H, Bondaruk J, Wang Y, Zhang S, Wang Z, Lee JG, Lee S, Cogdell D, Zhang M, Wei P, Grossman HB, Kamat A, Duplisea JJ, Ferguson JE 3rd, Huang H, Dadhania V, Gao J, Dinney C, Weinstein JN, Baggerly K, McConkey D, Czerniak B.

Cell Rep. 2019 May 7;27(6):1781-1793.e4. doi: 10.1016/j.celrep.2019.04.048.


Accelerating Biomarker Discovery Through Electronic Health Records, Automated Biobanking, and Proteomics.

Wells QS, Gupta DK, Smith JG, Collins SP, Storrow AB, Ferguson J, Smith ML, Pulley JM, Collier S, Wang X, Roden DM, Gerszten RE, Wang TJ.

J Am Coll Cardiol. 2019 May 7;73(17):2195-2205. doi: 10.1016/j.jacc.2019.01.074.


Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C3 and C4 Crops.

Leakey ADB, Ferguson JN, Pignon CP, Wu A, Jin Z, Hammer GL, Lobell DB.

Annu Rev Plant Biol. 2019 Apr 29;70:781-808. doi: 10.1146/annurev-arplant-042817-040305.


Adapting Continuous Positive Airway Pressure Therapy to Where Patients Live: A Comparative Case Study.

Miech EJ, Bravata DM, Yaggi HK, Austin C, Tobias LA, Ferguson J, Matthias MS.

Cureus. 2019 Feb 15;11(2):e4078. doi: 10.7759/cureus.4078.


Radiographic and Histological Analysis of a Synthetic Bone Graft Substitute Eluting Gentamicin in the Treatment of Chronic Osteomyelitis.

Ferguson J, Athanasou N, Diefenbeck M, McNally M.

J Bone Jt Infect. 2019 Mar 16;4(2):76-84. doi: 10.7150/jbji.31592. eCollection 2019.


Vacuum-Induced Surface Freezing for the Freeze-Drying of the Human Growth Hormone: How Does Nucleation Control Affect Protein Stability?

Oddone I, Arsiccio A, Duru C, Malik K, Ferguson J, Pisano R, Matejtschuk P.

J Pharm Sci. 2019 Apr 17. pii: S0022-3549(19)30242-4. doi: 10.1016/j.xphs.2019.04.014. [Epub ahead of print]


Bread enriched with phytosterols with or without curcumin modulates lipoprotein profiles in hypercholesterolaemic individuals. A randomised controlled trial.

Ferguson JJA, Wolska A, Remaley AT, Stojanovski E, MacDonald-Wicks L, Garg ML.

Food Funct. 2019 May 22;10(5):2515-2527. doi: 10.1039/c8fo02512f.


Oscillatory cortical forces promote three dimensional cell intercalations that shape the murine mandibular arch.

Tao H, Zhu M, Lau K, Whitley OKW, Samani M, Xiao X, Chen XX, Hahn NA, Liu W, Valencia M, Wu M, Wang X, Fenelon KD, Pasiliao CC, Hu D, Wu J, Spring S, Ferguson J, Karuna EP, Henkelman RM, Dunn A, Huang H, Ho HH, Atit R, Goyal S, Sun Y, Hopyan S.

Nat Commun. 2019 Apr 12;10(1):1703. doi: 10.1038/s41467-019-09540-z.


Detonation Velocity Measurements Using Rare-Earth Doped Fibres.

Pooley J, Price E, Ferguson JW, Ibsen M.

Sensors (Basel). 2019 Apr 10;19(7). pii: E1697. doi: 10.3390/s19071697.


Epidemiology of neonatal early-onset sepsis in a geographically diverse Australian health district 2006-2016.

Braye K, Foureur M, de Waal K, Jones M, Putt E, Ferguson J.

PLoS One. 2019 Apr 8;14(4):e0214298. doi: 10.1371/journal.pone.0214298. eCollection 2019.


Chronic Kidney Disease After Liver Transplantation: Impact of Extended Criteria Grafts.

Kalisvaart M, Schlegel A, Trivedi PJ, Roberts K, Mirza DF, Perera T, Isaac JI, Ferguson J, de Jonge J, Muiesan P.

Liver Transpl. 2019 Jun;25(6):922-933. doi: 10.1002/lt.25468.


Group B streptococcal screening, intrapartum antibiotic prophylaxis, and neonatal early-onset infection rates in an Australian local health district: 2006-2016.

Braye K, Foureur M, de Waal K, Jones M, Putt E, Ferguson J.

PLoS One. 2019 Apr 4;14(4):e0214295. doi: 10.1371/journal.pone.0214295. eCollection 2019.


Behavioural weight management interventions for postnatal women: A systematic review of systematic reviews of randomized controlled trials.

Ferguson JA, Daley AJ, Parretti HM.

Obes Rev. 2019 Jun;20(6):829-841. doi: 10.1111/obr.12834. Epub 2019 Apr 2. Review.


Genotypic and Phenotypic Variables Affect Meiotic Cell Cycle Progression, Tumor Ploidy, and Cancer-Associated Mortality in a brca2-Mutant Zebrafish Model.

Mensah L, Ferguson JL, Shive HR.

J Oncol. 2019 Feb 26;2019:9218251. doi: 10.1155/2019/9218251. eCollection 2019.


Exploring adolescents and young people's candidacy for utilising health services in a rural district, South Africa.

Nkosi B, Seeley J, Ngwenya N, Mchunu SL, Gumede D, Ferguson J, Doyle AM.

BMC Health Serv Res. 2019 Mar 28;19(1):195. doi: 10.1186/s12913-019-3960-1.


The Big Four: Functional Assessment Research Informs Preventative Behavior Analysis.

Ala'i-Rosales S, Cihon JH, Currier TDR, Ferguson JL, Leaf JB, Leaf R, McEachin J, Weinkauf SM.

Behav Anal Pract. 2018 Sep 20;12(1):222-234. doi: 10.1007/s40617-018-00291-9. eCollection 2019 Mar.


Use of a Level System with Flexible Shaping to Improve Synchronous Engagement.

Cihon JH, Ferguson JL, Leaf JB, Leaf R, McEachin J, Taubman M.

Behav Anal Pract. 2018 Apr 20;12(1):44-51. doi: 10.1007/s40617-018-0254-8. eCollection 2019 Mar.


Ov2 is a modulator of OvHV-2 RTA mediated gene expression.

Dry I, Nightingale K, Ferguson J, Hopkins J, Dalziel R.

Vet Res Commun. 2019 May;43(2):91-97. doi: 10.1007/s11259-019-09748-w. Epub 2019 Mar 21.


Collaborative study for the establishment of erythropoietin BRP batch 5.

Ferguson J, Burns CJ, Regourd E, Costanzo A.

Pharmeur Bio Sci Notes. 2019;2019:27-33.


Lipid Lowering Therapy, Low-Density Lipoprotein Level and Risk of Intracerebral Hemorrhage - A Meta-Analysis.

Judge C, Ruttledge S, Costello M, Murphy R, Loughlin E, Alvarez-Iglesias A, Ferguson J, Gorey S, Nolan A, Canavan M, O'Halloran M, O'Donnell MJ.

J Stroke Cerebrovasc Dis. 2019 Jun;28(6):1703-1709. doi: 10.1016/j.jstrokecerebrovasdis.2019.02.018. Epub 2019 Mar 14.


Joint association of urinary sodium and potassium excretion with cardiovascular events and mortality: prospective cohort study.

O'Donnell M, Mente A, Rangarajan S, McQueen MJ, O'Leary N, Yin L, Liu X, Swaminathan S, Khatib R, Rosengren A, Ferguson J, Smyth A, Lopez-Jaramillo P, Diaz R, Avezum A, Lanas F, Ismail N, Yusoff K, Dans A, Iqbal R, Szuba A, Mohammadifard N, Oguz A, Yusufali AH, Alhabib KF, Kruger IM, Yusuf R, Chifamba J, Yeates K, Dagenais G, Wielgosz A, Lear SA, Teo K, Yusuf S; PURE Investigators.

BMJ. 2019 Mar 13;364:l772. doi: 10.1136/bmj.l772.


Home-Based Exercise in Patients Awaiting Liver Transplantation: A Feasibility Study.

Williams FR, Vallance A, Faulkner T, Towey J, Durman S, Kyte D, Elsharkawy AM, Perera T, Holt A, Ferguson J, Lord JM, Armstrong MJ.

Liver Transpl. 2019 Jul;25(7):995-1006. doi: 10.1002/lt.25442. Epub 2019 Jun 6.


Tomato Phytonutrients Balance UV Response: Results from a Double-Blind, Randomized, Placebo-Controlled Study.

Groten K, Marini A, Grether-Beck S, Jaenicke T, Ibbotson SH, Moseley H, Ferguson J, Krutmann J.

Skin Pharmacol Physiol. 2019;32(2):101-108. doi: 10.1159/000497104. Epub 2019 Mar 5.


Clinical presentations of Hepatitis E: A clinical review with representative case histories.

Chauhan A, Webb G, Ferguson J.

Clin Res Hepatol Gastroenterol. 2019 Feb 23. pii: S2210-7401(19)30033-6. doi: 10.1016/j.clinre.2019.01.005. [Epub ahead of print]


Combined liver-kidney transplantation versus liver transplant alone based on KDIGO stratification of estimated glomerular filtration rate: data from the United Kingdom Transplant registry - a retrospective cohort study.

Tinti F, Mitterhofer AP, Umbro I, Nightingale P, Inston N, Ghallab M, Ferguson J, Mirza DF, Ball S, Lipkin G, Muiesan P, Perera MTPR.

Transpl Int. 2019 Feb 21. doi: 10.1111/tri.13413. [Epub ahead of print]


High molecular weight oat β-glucan enhances lipid-lowering effects of phytosterols. A randomised controlled trial.

Ferguson JJ, Stojanovski E, MacDonald-Wicks L, Garg ML.

Clin Nutr. 2019 Feb 10. pii: S0261-5614(19)30059-7. doi: 10.1016/j.clnu.2019.02.007. [Epub ahead of print]


Liver disease in the young adult: the challenges and rewards.

Thompson FM, Ferguson JW, Kelly DA, Hirschfield GM.

Lancet Gastroenterol Hepatol. 2019 Mar;4(3):248-254. doi: 10.1016/S2468-1253(18)30244-9. Review.


The Improving Quality in Liver Services accreditation scheme.

Ferguson J, Johnston D, Bano M.

Lancet Gastroenterol Hepatol. 2019 Mar;4(3):194. doi: 10.1016/S2468-1253(19)30003-2. No abstract available.


Predicting the Outcome of Photocyclisation Reactions: A Joint Experimental and Computational Investigation.

Wonanke ADD, Ferguson JL, Fitchett CM, Crittenden DL.

Chem Asian J. 2019 Apr 15;14(8):1293-1303. doi: 10.1002/asia.201801761. Epub 2019 Feb 20.


Accelerated flowering time reduces lifetime water use without penalizing reproductive performance in Arabidopsis.

Ferguson JN, Meyer RC, Edwards KD, Humphry M, Brendel O, Bechtold U.

Plant Cell Environ. 2019 Jun;42(6):1847-1867. doi: 10.1111/pce.13527. Epub 2019 Mar 12.


Development of a comprehensive mobile assessment of pressure (CMAP) system for pressure injury prevention for veterans with spinal cord injury.

Olney CM, Vos-Draper T, Egginton J, Ferguson J, Goldish G, Eddy B, Hansen AH, Carroll K, Morrow M.

J Spinal Cord Med. 2019 Jan 31:1-10. doi: 10.1080/10790268.2019.1570437. [Epub ahead of print]


Heart Disease and Stroke Statistics-2019 Update: A Report From the American Heart Association.

Benjamin EJ, Muntner P, Alonso A, Bittencourt MS, Callaway CW, Carson AP, Chamberlain AM, Chang AR, Cheng S, Das SR, Delling FN, Djousse L, Elkind MSV, Ferguson JF, Fornage M, Jordan LC, Khan SS, Kissela BM, Knutson KL, Kwan TW, Lackland DT, Lewis TT, Lichtman JH, Longenecker CT, Loop MS, Lutsey PL, Martin SS, Matsushita K, Moran AE, Mussolino ME, O'Flaherty M, Pandey A, Perak AM, Rosamond WD, Roth GA, Sampson UKA, Satou GM, Schroeder EB, Shah SH, Spartano NL, Stokes A, Tirschwell DL, Tsao CW, Turakhia MP, VanWagner LB, Wilkins JT, Wong SS, Virani SS; American Heart Association Council on Epidemiology and Prevention Statistics Committee and Stroke Statistics Subcommittee.

Circulation. 2019 Mar 5;139(10):e56-e528. doi: 10.1161/CIR.0000000000000659. No abstract available.


ASID/ACIPC position statement - Infection control for patients with Clostridium difficile infection in healthcare facilities.

Stuart RL, Marshall C, Harrington G, Sasko L, McLaws ML, Ferguson J.

Infect Dis Health. 2019 Feb;24(1):32-43. doi: 10.1016/j.idh.2018.10.001. Epub 2018 Nov 17.


A two-stage experimental design for dilution assays.

Ferguson JM, Miura TA, Miller CR.

Biometrics. 2019 Jan 28. doi: 10.1111/biom.13032. [Epub ahead of print]


Maternal Human Papillomavirus and Preterm Premature Rupture of Membranes: A Retrospective Cohort Study.

Caballero A, Dudley D, Ferguson J, Pettit K, Boyle A.

J Womens Health (Larchmt). 2019 May;28(5):606-611. doi: 10.1089/jwh.2018.7043. Epub 2019 Jan 23.


Large-Scale Analysis of Flavobacterium psychrophilum Multilocus Sequence Typing Genotypes Recovered from North American Salmonids Indicates that both Newly Identified and Recurrent Clonal Complexes Are Associated with Disease.

Knupp C, Wiens GD, Faisal M, Call DR, Cain KD, Nicolas P, Van Vliet D, Yamashita C, Ferguson JA, Meuninck D, Hsu HM, Baker BB, Shen L, Loch TP.

Appl Environ Microbiol. 2019 Mar 6;85(6). pii: e02305-18. doi: 10.1128/AEM.02305-18. Print 2019 Mar 15.


Physician Characteristics Associated With Ordering 4 Low-Value Screening Tests in Primary Care.

Bouck Z, Ferguson J, Ivers NM, Kerr EA, Shojania KG, Kim M, Cram P, Pendrith C, Mecredy GC, Glazier RH, Tepper J, Austin PC, Martin D, Levinson W, Bhatia RS.

JAMA Netw Open. 2018 Oct 5;1(6):e183506. doi: 10.1001/jamanetworkopen.2018.3506.


Deleterious Mutation Burden and Its Association with Complex Traits in Sorghum (Sorghum bicolor).

Valluru R, Gazave EE, Fernandes SB, Ferguson JN, Lozano R, Hirannaiah P, Zuo T, Brown PJ, Leakey ADB, Gore MA, Buckler ES, Bandillo N.

Genetics. 2019 Mar;211(3):1075-1087. doi: 10.1534/genetics.118.301742. Epub 2019 Jan 8.


Linking beaver dam affected flow dynamics to upstream passage of Arctic grayling.

Cutting KA, Ferguson JM, Anderson ML, Cook K, Davis SC, Levine R.

Ecol Evol. 2018 Dec 4;8(24):12905-12917. doi: 10.1002/ece3.4728. eCollection 2018 Dec.

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