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Items: 29

1.

Mycobacteria infect different cell types in the human lung and cause species dependent cellular changes in infected cells.

Ganbat D, Seehase S, Richter E, Vollmer E, Reiling N, Fellenberg K, Gaede KI, Kugler C, Goldmann T.

BMC Pulm Med. 2016 Jan 23;16:19. doi: 10.1186/s12890-016-0185-5.

2.

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data.

Feuerriegel S, Schleusener V, Beckert P, Kohl TA, Miotto P, Cirillo DM, Cabibbe AM, Niemann S, Fellenberg K.

J Clin Microbiol. 2015 Jun;53(6):1908-14. doi: 10.1128/JCM.00025-15. Epub 2015 Apr 8.

3.

Control of morphogenesis, protease secretion and gene expression in Candida albicans by the preferred nitrogen source ammonium.

Dunkel N, Biswas K, Hiller E, Fellenberg K, Satheesh SV, Rupp S, Morschhäuser J.

Microbiology. 2014 Aug;160(Pt 8):1599-608. doi: 10.1099/mic.0.078238-0. Epub 2014 May 19.

PMID:
24841705
4.

Plasma protein analysis of patients with different B-cell lymphomas using high-content antibody microarrays.

Schröder C, Srinivasan H, Sill M, Linseisen J, Fellenberg K, Becker N, Nieters A, Hoheisel JD.

Proteomics Clin Appl. 2013 Dec;7(11-12):802-12. doi: 10.1002/prca.201300048.

PMID:
24323458
5.

Ultra-high intra-spectrum mass accuracy enables unambiguous identification of fragment reporter ions in isobaric multiplexed quantitative proteomics.

Pachl F, Fellenberg K, Wagner C, Kuster B.

Proteomics. 2012 May;12(9):1328-32. doi: 10.1002/pmic.201100622.

PMID:
22589182
6.

Replication and virus-induced transcriptome of HAdV-5 in normal host cells versus cancer cells--differences of relevance for adenoviral oncolysis.

Dorer DE, Holtrup F, Fellenberg K, Kaufmann JK, Engelhardt S, Hoheisel JD, Nettelbeck DM.

PLoS One. 2011;6(11):e27934. doi: 10.1371/journal.pone.0027934. Epub 2011 Nov 30.

7.

Robust protein profiling with complex antibody microarrays in a dual-colour mode.

Schröder C, Alhamdani MS, Fellenberg K, Bauer A, Jacob A, Hoheisel JD.

Methods Mol Biol. 2011;785:203-21. doi: 10.1007/978-1-61779-286-1_14.

PMID:
21901602
8.

Microarray analysis of nemorosone-induced cytotoxic effects on pancreatic cancer cells reveals activation of the unfolded protein response (UPR).

Holtrup F, Bauer A, Fellenberg K, Hilger RA, Wink M, Hoheisel JD.

Br J Pharmacol. 2011 Mar;162(5):1045-59. doi: 10.1111/j.1476-5381.2010.01125.x.

9.

Sulfite reductase defines a newly discovered bottleneck for assimilatory sulfate reduction and is essential for growth and development in Arabidopsis thaliana.

Khan MS, Haas FH, Samami AA, Gholami AM, Bauer A, Fellenberg K, Reichelt M, Hänsch R, Mendel RR, Meyer AJ, Wirtz M, Hell R.

Plant Cell. 2010 Apr;22(4):1216-31. doi: 10.1105/tpc.110.074088. Epub 2010 Apr 27.

10.

Cross-species common regulatory network inference without requirement for prior gene affiliation.

Gholami AM, Fellenberg K.

Bioinformatics. 2010 Apr 15;26(8):1082-90. doi: 10.1093/bioinformatics/btq096. Epub 2010 Mar 2.

PMID:
20200011
11.

Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-related antibodies.

Schröder C, Jacob A, Tonack S, Radon TP, Sill M, Zucknick M, Rüffer S, Costello E, Neoptolemos JP, Crnogorac-Jurcevic T, Bauer A, Fellenberg K, Hoheisel JD.

Mol Cell Proteomics. 2010 Jun;9(6):1271-80. doi: 10.1074/mcp.M900419-MCP200. Epub 2010 Feb 16.

12.

The transcriptome of the colonial marine hydroid Hydractinia echinata.

Soza-Ried J, Hotz-Wagenblatt A, Glatting KH, del Val C, Fellenberg K, Bode HR, Frank U, Hoheisel JD, Frohme M.

FEBS J. 2010 Jan;277(1):197-209. doi: 10.1111/j.1742-4658.2009.07474.x. Epub 2009 Dec 3.

13.

Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons.

Queiroz R, Benz C, Fellenberg K, Hoheisel JD, Clayton C.

BMC Genomics. 2009 Oct 26;10:495. doi: 10.1186/1471-2164-10-495.

14.

Gene expression profiling identifies novel key players involved in the cytotoxic effect of Artesunate on pancreatic cancer cells.

Youns M, Efferth T, Reichling J, Fellenberg K, Bauer A, Hoheisel JD.

Biochem Pharmacol. 2009 Aug 1;78(3):273-83. doi: 10.1016/j.bcp.2009.04.014. Epub 2009 Apr 22.

PMID:
19393226
15.

From experimental setup to data analysis in transcriptomics: copper metabolism in the human pathogen Candida albicans.

Hauser NC, Dukalska M, Fellenberg K, Rupp S.

J Biophotonics. 2009 Apr;2(4):262-8. doi: 10.1002/jbio.200910004.

PMID:
19367594
16.

Use of complex DNA and antibody microarrays as tools in functional analyses.

Bauer A, Beckmann B, Busold C, Brandt O, Kusnezow W, Pullat J, Aign V, Fellenberg K, Fleischer R, Jacob A, Frohme M, Hoheisel JD.

Comp Funct Genomics. 2003;4(5):520-4. doi: 10.1002/cfg.320.

17.

Whole genome analysis of a wine yeast strain.

Hauser NC, Fellenberg K, Gil R, Bastuck S, Hoheisel JD, Pérez-Ortín JE.

Comp Funct Genomics. 2001;2(2):69-79. doi: 10.1002/cfg.73.

18.

Genotypic resistance testing in HIV by arrayed primer extension.

Schanné M, Bodem J, Gerhold-Ay A, Jacob A, Fellenberg K, Kräusslich HG, Hoheisel JD.

Anal Bioanal Chem. 2008 Jul;391(5):1661-9. doi: 10.1007/s00216-007-1775-0. Epub 2008 Jan 18.

19.

New bioinformatic strategies to rapidly characterize retroviral integration sites of gene therapy vectors.

Giordano FA, Hotz-Wagenblatt A, Lauterborn D, Appelt JU, Fellenberg K, Nagy KZ, Zeller WJ, Suhai S, Fruehauf S, Laufs S.

Methods Inf Med. 2007;46(5):542-7.

PMID:
17938776
20.

Small trypanosome RNA-binding proteins TbUBP1 and TbUBP2 influence expression of F-box protein mRNAs in bloodstream trypanosomes.

Hartmann C, Benz C, Brems S, Ellis L, Luu VD, Stewart M, D'Orso I, Busold C, Fellenberg K, Frasch AC, Carrington M, Hoheisel J, Clayton CE.

Eukaryot Cell. 2007 Nov;6(11):1964-78. Epub 2007 Sep 14.

21.

Systematic interpretation of microarray data using experiment annotations.

Fellenberg K, Busold CH, Witt O, Bauer A, Beckmann B, Hauser NC, Frohme M, Winter S, Dippon J, Hoheisel JD.

BMC Genomics. 2006 Dec 20;7:319.

22.

Integration of GO annotations in Correspondence Analysis: facilitating the interpretation of microarray data.

Busold CH, Winter S, Hauser N, Bauer A, Dippon J, Hoheisel JD, Fellenberg K.

Bioinformatics. 2005 May 15;21(10):2424-9. Epub 2005 Mar 3.

PMID:
15746280
23.

Characterization of antirrhinum petal development and identification of target genes of the class B MADS box gene DEFICIENS.

Bey M, Stüber K, Fellenberg K, Schwarz-Sommer Z, Sommer H, Saedler H, Zachgo S.

Plant Cell. 2004 Dec;16(12):3197-215. Epub 2004 Nov 11.

24.

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome.

Hild M, Beckmann B, Haas SA, Koch B, Solovyev V, Busold C, Fellenberg K, Boutros M, Vingron M, Sauer F, Hoheisel JD, Paro R.

Genome Biol. 2003;5(1):R3. Epub 2003 Dec 22.

25.

Microarray data representation, annotation and storage.

Brazma A, Sarkans U, Robinson A, Vilo J, Vingron M, Hoheisel J, Fellenberg K.

Adv Biochem Eng Biotechnol. 2002;77:113-39.

PMID:
12227734
26.

Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis.

Fellenberg K, Hauser NC, Brors B, Hoheisel JD, Vingron M.

Bioinformatics. 2002 Mar;18(3):423-33.

PMID:
11934741
27.

Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays.

Scheideler M, Schlaich NL, Fellenberg K, Beissbarth T, Hauser NC, Vingron M, Slusarenko AJ, Hoheisel JD.

J Biol Chem. 2002 Mar 22;277(12):10555-61. Epub 2001 Dec 17.

28.

Correspondence analysis applied to microarray data.

Fellenberg K, Hauser NC, Brors B, Neutzner A, Hoheisel JD, Vingron M.

Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10781-6. Epub 2001 Sep 4.

29.

Processing and quality control of DNA array hybridization data.

Beissbarth T, Fellenberg K, Brors B, Arribas-Prat R, Boer J, Hauser NC, Scheideler M, Hoheisel JD, Schütz G, Poustka A, Vingron M.

Bioinformatics. 2000 Nov;16(11):1014-22.

PMID:
11159313

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