Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 34

1.

Validating the NCBI AMRFinder Tool and Resistance Gene Database Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of NARMS Isolates.

Feldgarden M, Brover V, Haft DH, Prasad AB, Slotta DJ, Tolstoy I, Tyson GH, Zhao S, Hsu CH, McDermott PF, Tadesse DA, Morales C, Simmons M, Tillman G, Wasilenko J, Folster JP, Klimke W.

Antimicrob Agents Chemother. 2019 Aug 19. pii: AAC.00483-19. doi: 10.1128/AAC.00483-19. [Epub ahead of print]

2.

Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere.

Challagundla L, Reyes J, Rafiqullah I, Sordelli DO, Echaniz-Aviles G, Velazquez-Meza ME, Castillo-Ramírez S, Fittipaldi N, Feldgarden M, Chapman SB, Calderwood MS, Carvajal LP, Rincon S, Hanson B, Planet PJ, Arias CA, Diaz L, Robinson DA.

Front Microbiol. 2018 Aug 22;9:1901. doi: 10.3389/fmicb.2018.01901. eCollection 2018.

3.

Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.

Partridge SR, Di Pilato V, Doi Y, Feldgarden M, Haft DH, Klimke W, Kumar-Singh S, Liu JH, Malhotra-Kumar S, Prasad A, Rossolini GM, Schwarz S, Shen J, Walsh T, Wang Y, Xavier BB.

J Antimicrob Chemother. 2018 Oct 1;73(10):2625-2630. doi: 10.1093/jac/dky262.

4.

Genomics of Corynebacterium striatum, an emerging multidrug-resistant pathogen of immunocompromised patients.

Nudel K, Zhao X, Basu S, Dong X, Hoffmann M, Feldgarden M, Allard M, Klompas M, Bry L.

Clin Microbiol Infect. 2018 Sep;24(9):1016.e7-1016.e13. doi: 10.1016/j.cmi.2017.12.024. Epub 2018 Jan 9.

5.

Whole-genome comparison of urinary pathogenic Escherichia coli and faecal isolates of UTI patients and healthy controls.

Nielsen KL, Stegger M, Kiil K, Godfrey PA, Feldgarden M, Lilje B, Andersen PS, Frimodt-Møller N.

Int J Med Microbiol. 2017 Dec;307(8):497-507. doi: 10.1016/j.ijmm.2017.09.007. Epub 2017 Sep 14.

6.

Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks.

Cerqueira GC, Earl AM, Ernst CM, Grad YH, Dekker JP, Feldgarden M, Chapman SB, Reis-Cunha JL, Shea TP, Young S, Zeng Q, Delaney ML, Kim D, Peterson EM, O'Brien TF, Ferraro MJ, Hooper DC, Huang SS, Kirby JE, Onderdonk AB, Birren BW, Hung DT, Cosimi LA, Wortman JR, Murphy CI, Hanage WP.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):1135-1140. doi: 10.1073/pnas.1616248114. Epub 2017 Jan 17.

7.

Adaptation of Escherichia coli traversing from the faecal environment to the urinary tract.

Nielsen KL, Stegger M, Godfrey PA, Feldgarden M, Andersen PS, Frimodt-Møller N.

Int J Med Microbiol. 2016 Dec;306(8):595-603. doi: 10.1016/j.ijmm.2016.10.005. Epub 2016 Nov 4.

8.

Comment on: Resistance gene naming and numbering: is it a new gene or not?

Jacoby GA, Bonomo RA, Bradford PA, Bush K, Doi Y, Feldgarden M, Haft D, Klimke W, Nordmann P, Palzkill T, Poirel L, Prasad A, Rossolini GM, Walsh T.

J Antimicrob Chemother. 2016 Sep;71(9):2677-8. doi: 10.1093/jac/dkw204. Epub 2016 Jun 3. No abstract available.

9.

The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.

Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, Feldgarden M, Wortman J, Clermont D, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P, Rocha EP.

Genome Biol Evol. 2014 Oct 13;6(10):2866-82. doi: 10.1093/gbe/evu225.

10.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

11.

Selection of unique Escherichia coli clones by random amplified polymorphic DNA (RAPD): Evaluation by whole genome sequencing.

Nielsen KL, Godfrey PA, Stegger M, Andersen PS, Feldgarden M, Frimodt-Møller N.

J Microbiol Methods. 2014 Aug;103:101-3. doi: 10.1016/j.mimet.2014.05.018. Epub 2014 Jun 6.

12.

Identification of 50 class D β-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp.

Périchon B, Goussard S, Walewski V, Krizova L, Cerqueira G, Murphy C, Feldgarden M, Wortman J, Clermont D, Nemec A, Courvalin P.

Antimicrob Agents Chemother. 2014;58(2):936-49. doi: 10.1128/AAC.01261-13. Epub 2013 Nov 25.

13.

Whole-Genome Sequences of 94 Environmental Isolates of Bacillus cereus Sensu Lato.

Van der Auwera GA, Feldgarden M, Kolter R, Mahillon J.

Genome Announc. 2013 Oct 3;1(5). pii: e00380-13. doi: 10.1128/genomeA.00380-13.

14.

Staphylococcal enterotoxin P predicts bacteremia in hospitalized patients colonized with methicillin-resistant Staphylococcus aureus.

Calderwood MS, Desjardins CA, Sakoulas G, Nicol R, Dubois A, Delaney ML, Kleinman K, Cosimi LA, Feldgarden M, Onderdonk AB, Birren BW, Platt R, Huang SS; CDC Prevention Epicenters Program.

J Infect Dis. 2014 Feb 15;209(4):571-7. doi: 10.1093/infdis/jit501. Epub 2013 Sep 16.

15.

Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.

Kos VN, Desjardins CA, Griggs A, Cerqueira G, Van Tonder A, Holden MT, Godfrey P, Palmer KL, Bodi K, Mongodin EF, Wortman J, Feldgarden M, Lawley T, Gill SR, Haas BJ, Birren B, Gilmore MS.

MBio. 2012 May 22;3(3). pii: e00112-12. doi: 10.1128/mBio.00112-12. Print 2012.

16.

Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus.

McAdam PR, Templeton KE, Edwards GF, Holden MT, Feil EJ, Aanensen DM, Bargawi HJ, Spratt BG, Bentley SD, Parkhill J, Enright MC, Holmes A, Girvan EK, Godfrey PA, Feldgarden M, Kearns AM, Rambaut A, Robinson DA, Fitzgerald JR.

Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):9107-12. doi: 10.1073/pnas.1202869109. Epub 2012 May 14.

17.

Draft genome sequences of Staphylococcus aureus sequence type 34 (ST34) and ST42 hybrids.

Thomas JC, Godfrey PA, Feldgarden M, Robinson DA.

J Bacteriol. 2012 May;194(10):2740-1. doi: 10.1128/JB.00248-12.

18.

Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus.

Palmer KL, Godfrey P, Griggs A, Kos VN, Zucker J, Desjardins C, Cerqueira G, Gevers D, Walker S, Wortman J, Feldgarden M, Haas B, Birren B, Gilmore MS.

MBio. 2012 Mar 1;3(1):e00318-11. doi: 10.1128/mBio.00318-11. Print 2012.

19.

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.

Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, Godfrey P, Haas BJ, Murphy CI, Russ C, Sykes S, Walker BJ, Wortman JR, Young S, Zeng Q, Abouelleil A, Bochicchio J, Chauvin S, Desmet T, Gujja S, McCowan C, Montmayeur A, Steelman S, Frimodt-Møller J, Petersen AM, Struve C, Krogfelt KA, Bingen E, Weill FX, Lander ES, Nusbaum C, Birren BW, Hung DT, Hanage WP.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3065-70. doi: 10.1073/pnas.1121491109. Epub 2012 Feb 6. Erratum in: Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5547.

20.

Candidate targets of balancing selection in the genome of Staphylococcus aureus.

Thomas JC, Godfrey PA, Feldgarden M, Robinson DA.

Mol Biol Evol. 2012 Apr;29(4):1175-86. doi: 10.1093/molbev/msr286. Epub 2011 Nov 22.

21.

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species.

Luo C, Walk ST, Gordon DM, Feldgarden M, Tiedje JM, Konstantinidis KT.

Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7200-5. doi: 10.1073/pnas.1015622108. Epub 2011 Apr 11.

22.

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ; Human Microbiome Consortium, Petrosino JF, Knight R, Birren BW.

Genome Res. 2011 Mar;21(3):494-504. doi: 10.1101/gr.112730.110. Epub 2011 Jan 6.

23.

A catalog of reference genomes from the human microbiome.

Human Microbiome Jumpstart Reference Strains Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D.

Science. 2010 May 21;328(5981):994-9. doi: 10.1126/science.1183605.

24.

High-quality draft genome sequences of 28 Enterococcus sp. isolates.

Palmer KL, Carniol K, Manson JM, Heiman D, Shea T, Young S, Zeng Q, Gevers D, Feldgarden M, Birren B, Gilmore MS.

J Bacteriol. 2010 May;192(9):2469-70. doi: 10.1128/JB.00153-10. Epub 2010 Mar 5.

25.

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics.

Beres SB, Carroll RK, Shea PR, Sitkiewicz I, Martinez-Gutierrez JC, Low DE, McGeer A, Willey BM, Green K, Tyrrell GJ, Goldman TD, Feldgarden M, Birren BW, Fofanov Y, Boos J, Wheaton WD, Honisch C, Musser JM.

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4371-6. doi: 10.1073/pnas.0911295107. Epub 2010 Feb 8.

26.

Haplotype diversity in "source-sink" dynamics of Escherichia coli urovirulence.

Chattopadhyay S, Feldgarden M, Weissman SJ, Dykhuizen DE, van Belle G, Sokurenko EV.

J Mol Evol. 2007 Feb;64(2):204-14. Epub 2006 Dec 19.

PMID:
17177088
27.

Selection footprint in the FimH adhesin shows pathoadaptive niche differentiation in Escherichia coli.

Sokurenko EV, Feldgarden M, Trintchina E, Weissman SJ, Avagyan S, Chattopadhyay S, Johnson JR, Dykhuizen DE.

Mol Biol Evol. 2004 Jul;21(7):1373-83. Epub 2004 Mar 24.

PMID:
15044596
28.

Gradual evolution in bacteria: evidence from Bacillus systematics.

Feldgarden M, Byrd N, Cohan FM.

Microbiology. 2003 Dec;149(Pt 12):3565-73.

PMID:
14663088
29.

SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA.

Feldgarden M, Stoebel DM, Brisson D, Dykhuizen DE.

Ecology. 2003 Jul;84(7):1679-1687.

30.

THE PHENOTYPIC AND FITNESS EFFECTS OF COLICIN RESISTANCE IN ESCHERICHIA COLI K-12.

Feldgarden M, Riley MA.

Evolution. 1999 Aug;53(4):1019-1027. doi: 10.1111/j.1558-5646.1999.tb04517.x.

PMID:
28565527
31.

HIGH LEVELS OF COLICIN RESISTANCE IN ESCHERICHIA COLI.

Feldgarden M, Riley MA.

Evolution. 1998 Oct;52(5):1270-1276. doi: 10.1111/j.1558-5646.1998.tb02008.x.

PMID:
28565393
32.

Can phage defence maintain colicin plasmids in Escherichia coli?

Feldgarden M, Golden S, Wilson H, Riley MA.

Microbiology. 1995 Nov;141 ( Pt 11):2977-84.

PMID:
8535525
33.

To Thine Own Self be True? Yes! Thou Canst Not Then be False to Any Other. A Reply to Grosberg.

Yund PO, Feldgarden M.

Biol Bull. 1992 Jun;182(3):458-459. doi: 10.2307/1542266. No abstract available.

PMID:
29304581
34.

Allorecognition in Colonial Marine Invertebrates: Does Selection Favor Fusion with Kin of Fusion with Self?

Feldgarden M, Yund PO.

Biol Bull. 1992 Feb;182(1):155-158. doi: 10.2307/1542190.

PMID:
29304700

Supplemental Content

Loading ...
Support Center