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Items: 1 to 50 of 176

1.

WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome.

Pinholt M, Bayliss SC, Gumpert H, Worning P, Jensen VVS, Pedersen M, Feil EJ, Westh H.

J Antimicrob Chemother. 2019 Mar 30. pii: dkz118. doi: 10.1093/jac/dkz118. [Epub ahead of print]

PMID:
30929020
2.

Real time monitoring of Aeromonas salmonicida evolution in response to successive antibiotic therapies in a commercial fish farm.

Du X, Bayliss SC, Feil EJ, Liu Y, Wang C, Zhang G, Zhou D, Wei D, Tang N, Leclercq SO, Feng J.

Environ Microbiol. 2019 Mar;21(3):1113-1123. doi: 10.1111/1462-2920.14531. Epub 2019 Feb 22.

PMID:
30637959
3.

Using the wax moth larva Galleria mellonella infection model to detect emerging bacterial pathogens.

Hernandez RJ, Hesse E, Dowling AJ, Coyle NM, Feil EJ, Gaze WH, Vos M.

PeerJ. 2019 Jan 4;6:e6150. doi: 10.7717/peerj.6150. eCollection 2019.

4.

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis.

Méric G, Mageiros L, Pensar J, Laabei M, Yahara K, Pascoe B, Kittiwan N, Tadee P, Post V, Lamble S, Bowden R, Bray JE, Morgenstern M, Jolley KA, Maiden MCJ, Feil EJ, Didelot X, Miragaia M, de Lencastre H, Moriarty TF, Rohde H, Massey R, Mack D, Corander J, Sheppard SK.

Nat Commun. 2018 Nov 28;9(1):5034. doi: 10.1038/s41467-018-07368-7.

5.

Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation.

Brynildsrud OB, Pepperell CS, Suffys P, Grandjean L, Monteserin J, Debech N, Bohlin J, Alfsnes K, Pettersson JO, Kirkeleite I, Fandinho F, da Silva MA, Perdigao J, Portugal I, Viveiros M, Clark T, Caws M, Dunstan S, Thai PVK, Lopez B, Ritacco V, Kitchen A, Brown TS, van Soolingen D, O'Neill MB, Holt KE, Feil EJ, Mathema B, Balloux F, Eldholm V.

Sci Adv. 2018 Oct 17;4(10):eaat5869. doi: 10.1126/sciadv.aat5869. eCollection 2018 Oct.

6.

Mediation analyses of Internet-facilitated cognitive behavioral intervention for maternal depression.

Seeley JR, Sheeber LB, Feil EG, Leve C, Davis B, Sorensen E, Allan S.

Cogn Behav Ther. 2019 Jul;48(4):337-352. doi: 10.1080/16506073.2018.1513554. Epub 2018 Oct 12.

PMID:
30311850
7.

Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland.

Al-Khafaji AM, Clegg SR, Pinder AC, Luu L, Hansford KM, Seelig F, Dinnis RE, Margos G, Medlock JM, Feil EJ, Darby AC, McGarry JW, Gilbert L, Plantard O, Sassera D, Makepeace BL.

Ticks Tick Borne Dis. 2019 Jan;10(1):52-62. doi: 10.1016/j.ttbdis.2018.08.016. Epub 2018 Aug 31.

PMID:
30197267
8.

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry.

Bayliss SC, Verner-Jeffreys DW, Ryder D, Suarez R, Ramirez R, Romero J, Pascoe B, Sheppard SK, Godoy M, Feil EJ.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000201. Epub 2018 Jul 24.

9.

Gene exchange drives the ecological success of a multi-host bacterial pathogen.

Richardson EJ, Bacigalupe R, Harrison EM, Weinert LA, Lycett S, Vrieling M, Robb K, Hoskisson PA, Holden MTG, Feil EJ, Paterson GK, Tong SYC, Shittu A, van Wamel W, Aanensen DM, Parkhill J, Peacock SJ, Corander J, Holmes M, Fitzgerald JR.

Nat Ecol Evol. 2018 Sep;2(9):1468-1478. doi: 10.1038/s41559-018-0617-0. Epub 2018 Jul 23.

10.

Evidence for an effect of landscape connectivity on Borrelia burgdorferi sensu stricto dispersion in a zone of range expansion.

Mechai S, Margos G, Feil EJ, Lindsay LR, Michel P, Kotchi SO, Ogden NH.

Ticks Tick Borne Dis. 2018 Sep;9(6):1407-1415. doi: 10.1016/j.ttbdis.2018.07.001. Epub 2018 Jul 2.

11.

Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones.

Tyler S, Tyson S, Dibernardo A, Drebot M, Feil EJ, Graham M, Knox NC, Lindsay LR, Margos G, Mechai S, Van Domselaar G, Thorpe HA, Ogden NH.

Sci Rep. 2018 Jul 12;8(1):10552. doi: 10.1038/s41598-018-28908-7.

12.

The importance of cross-disciplinary research to combat antimicrobial resistance: introducing a new pop-up journal, X-AMR.

Knight G, Lambert H, Feil E, Holmes M, Lindsay J.

J Med Microbiol. 2018 Aug;67(8):1017-1018. doi: 10.1099/mic.0.000684. Epub 2018 Jun 22. No abstract available.

13.

The importance of cross-disciplinary research to combat antimicrobial resistance: introducing a new pop-up journal, X-AMR.

Knight G, Lambert H, Feil E, Holmes M, Lindsay J.

Microb Genom. 2018 Jul;4(7). doi: 10.1099/mic.0.000684. Epub 2018 Jun 22. No abstract available.

14.

The importance of cross-disciplinary research to combat antimicrobial resistance: introducing a new pop-up journal, X-AMR.

Knight G, Lambert H, Feil E, Holmes M, Lindsay J.

J Gen Virol. 2018 Aug;99(8):951-952. doi: 10.1099/mic.0.000684. Epub 2018 Jun 22. No abstract available.

PMID:
29932386
15.

The importance of cross-disciplinary research to combat antimicrobial resistance: introducing a new pop-up journal, X-AMR.

Knight G, Lambert H, Feil E, Holmes M, Lindsay J.

Microbiology. 2018 Aug;164(8):1007-1008. doi: 10.1099/mic.0.000684. Epub 2018 Jun 20. No abstract available.

PMID:
29923824
16.

The distribution of bacterial doubling times in the wild.

Gibson B, Wilson DJ, Feil E, Eyre-Walker A.

Proc Biol Sci. 2018 Jun 13;285(1880). pii: 20180789. doi: 10.1098/rspb.2018.0789.

17.

Enantioselective fractionation of fluoroquinolones in the aqueous environment using chiral liquid chromatography coupled with tandem mass spectrometry.

Castrignanò E, Kannan AM, Feil EJ, Kasprzyk-Hordern B.

Chemosphere. 2018 Sep;206:376-386. doi: 10.1016/j.chemosphere.2018.05.005. Epub 2018 May 4.

18.

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria.

Thorpe HA, Bayliss SC, Sheppard SK, Feil EJ.

Gigascience. 2018 Apr 1;7(4):1-11. doi: 10.1093/gigascience/giy015.

19.

Phylogeny of Vibrio vulnificus from the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy.

Roig FJ, González-Candelas F, Sanjuán E, Fouz B, Feil EJ, Llorens C, Baker-Austin C, Oliver JD, Danin-Poleg Y, Gibas CJ, Kashi Y, Gulig PA, Morrison SS, Amaro C.

Front Microbiol. 2018 Jan 5;8:2613. doi: 10.3389/fmicb.2017.02613. eCollection 2017.

20.

A Randomized Study of a Mobile Behavioral Parent Training Application.

Feil EG, Sprengelmeyer PG, Leve C.

Telemed J E Health. 2018 Jun;24(6):457-463. doi: 10.1089/tmj.2017.0137. Epub 2017 Dec 12.

21.

Population genetic structuring of methicillin-resistant Staphylococcus aureus clone EMRSA-15 within UK reflects patient referral patterns.

Donker T, Reuter S, Scriberras J, Reynolds R, Brown NM, Török ME, James R, Network EOEMR, Aanensen DM, Bentley SD, Holden MTG, Parkhill J, Spratt BG, Peacock SJ, Feil EJ, Grundmann H.

Microb Genom. 2017 Jul 4;3(7):e000113. doi: 10.1099/mgen.0.000113. eCollection 2017 Jul.

22.

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland.

Reuter S, Török ME, Holden MTG, Reynolds R, Raven KE, Blane B, Donker T, Bentley SD, Aanensen DM, Grundmann H, Feil EJ, Spratt BG, Parkhill J, Peacock SJ.

Genome Res. 2017 Sep;27(9):1622. doi: 10.1101/gr.228155.117. No abstract available.

23.
24.

A Randomized Controlled Trial Examination of a Remote Parenting Intervention: Engagement and Effects on Parenting Behavior and Child Abuse Potential.

Baggett K, Davis B, Feil E, Sheeber L, Landry S, Leve C, Johnson U.

Child Maltreat. 2017 Nov;22(4):315-323. doi: 10.1177/1077559517712000. Epub 2017 Jun 7.

25.

Bayesian identification of bacterial strains from sequencing data.

Sankar A, Malone B, Bayliss SC, Pascoe B, Méric G, Hitchings MD, Sheppard SK, Feil EJ, Corander J, Honkela A.

Microb Genom. 2016 Aug 25;2(8):e000075. doi: 10.1099/mgen.0.000075. eCollection 2016 Aug.

26.

Identifying copy number variation of the dominant virulence factors msa and p22 within genomes of the fish pathogen Renibacterium salmoninarum.

Brynildsrud O, Gulla S, Feil EJ, Nørstebø SF, Rhodes LD.

Microb Genom. 2016 Apr 29;2(4):e000055. doi: 10.1099/mgen.0.000055. eCollection 2016 Apr.

27.

Microreact: visualizing and sharing data for genomic epidemiology and phylogeography.

Argimón S, Abudahab K, Goater RJE, Fedosejev A, Bhai J, Glasner C, Feil EJ, Holden MTG, Yeats CA, Grundmann H, Spratt BG, Aanensen DM.

Microb Genom. 2016 Nov 30;2(11):e000093. doi: 10.1099/mgen.0.000093. eCollection 2016 Nov.

28.

Mom-net: Evaluation of an internet-facilitated cognitive behavioral intervention for low-income depressed mothers.

Sheeber LB, Feil EG, Seeley JR, Leve C, Gau JM, Davis B, Sorensen E, Allan S.

J Consult Clin Psychol. 2017 Apr;85(4):355-366. doi: 10.1037/ccp0000175.

29.

The use of Oxford Nanopore native barcoding for complete genome assembly.

Bayliss SC, Hunt VL, Yokoyama M, Thorpe HA, Feil EJ.

Gigascience. 2017 Mar 1;6(3):1-6. doi: 10.1093/gigascience/gix001.

30.

Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species.

Thorpe HA, Bayliss SC, Hurst LD, Feil EJ.

Genetics. 2017 May;206(1):363-376. doi: 10.1534/genetics.116.195784. Epub 2017 Mar 9.

31.

The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.

Bayliss SC, Verner-Jeffreys DW, Bartie KL, Aanensen DM, Sheppard SK, Adams A, Feil EJ.

Front Microbiol. 2017 Feb 3;8:121. doi: 10.3389/fmicb.2017.00121. eCollection 2017. Review.

32.

Enterobacteriaceae: joining the dots with pan-European epidemiology.

Feil EJ.

Lancet Infect Dis. 2017 Feb;17(2):118-119. doi: 10.1016/S1473-3099(16)30333-4. Epub 2016 Nov 18. No abstract available.

PMID:
27866943
33.

A Technology-Mediated Approach to the Implementation of an Evidence-Based Child Maltreatment Prevention Program.

Self-Brown SR, C Osborne M, Rostad W, Feil E.

Child Maltreat. 2017 Nov;22(4):344-353. doi: 10.1177/1077559516678482. Epub 2016 Nov 11.

PMID:
27837009
34.

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark.

Pinholt M, Gumpert H, Bayliss S, Nielsen JB, Vorobieva V, Pedersen M, Feil E, Worning P, Westh H.

J Antimicrob Chemother. 2017 Jan;72(1):40-47. Epub 2016 Sep 7.

PMID:
27605596
35.

Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing.

Senghore M, Bayliss SC, Kwambana-Adams BA, Foster-Nyarko E, Manneh J, Dione M, Badji H, Ebruke C, Doughty EL, Thorpe HA, Jasinska AJ, Schmitt CA, Cramer JD, Turner TR, Weinstock G, Freimer NB, Pallen MJ, Feil EJ, Antonio M.

Appl Environ Microbiol. 2016 Sep 16;82(19):5910-7. doi: 10.1128/AEM.01496-16. Print 2016 Oct 1.

36.

Correction: The Diversity and Geographical Structure of Orientia tsutsugamushi Strains from Scrub Typhus Patients in Laos.

Phetsouvanh R, Sonthayanon P, Pukrittayakamee S, Paris DH, Newton PN, Feil EJ, Day NP.

PLoS Negl Trop Dis. 2016 May 17;10(5):e0004742. doi: 10.1371/journal.pntd.0004742. eCollection 2016 May.

37.

Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe.

Aanensen DM, Feil EJ, Holden MT, Dordel J, Yeats CA, Fedosejev A, Goater R, Castillo-Ramírez S, Corander J, Colijn C, Chlebowicz MA, Schouls L, Heck M, Pluister G, Ruimy R, Kahlmeter G, Åhman J, Matuschek E, Friedrich AW, Parkhill J, Bentley SD, Spratt BG, Grundmann H; European SRL Working Group.

MBio. 2016 May 5;7(3). pii: e00444-16. doi: 10.1128/mBio.00444-16.

38.

The impact of host metapopulation structure on the population genetics of colonizing bacteria.

Numminen E, Gutmann M, Shubin M, Marttinen P, Méric G, van Schaik W, Coque TM, Baquero F, Willems RJ, Sheppard SK, Feil EJ, Hanage WP, Corander J.

J Theor Biol. 2016 May 7;396:53-62. doi: 10.1016/j.jtbi.2016.02.019. Epub 2016 Feb 23.

PMID:
26916623
39.

Evidence for Host-Genotype Associations of Borrelia burgdorferi Sensu Stricto.

Mechai S, Margos G, Feil EJ, Barairo N, Lindsay LR, Michel P, Ogden NH.

PLoS One. 2016 Feb 22;11(2):e0149345. doi: 10.1371/journal.pone.0149345. eCollection 2016.

40.

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.

Chang HH, Dordel J, Donker T, Worby CJ, Feil EJ, Hanage WP, Bentley SD, Huang SS, Lipsitch M.

Genome Med. 2016 Feb 13;8(1):18. doi: 10.1186/s13073-016-0274-3.

41.

Early Intervention for Preschoolers at Risk for Attention-Deficit/Hyperactivity Disorder: Preschool First Step to Success.

Feil EG, Small JW, Seeley JR, Walker HM, Golly A, Frey A, Forness SR.

Behav Disord. 2016 Feb;41(2):95-106. doi: 10.17988/0198-7429-41.2.95. Epub 2016 Feb 1.

42.

The Stealthy Superbug: the Role of Asymptomatic Enteric Carriage in Maintaining a Long-Term Hospital Outbreak of ST228 Methicillin-Resistant Staphylococcus aureus.

Senn L, Clerc O, Zanetti G, Basset P, Prod'hom G, Gordon NC, Sheppard AE, Crook DW, James R, Thorpe HA, Feil EJ, Blanc DS.

MBio. 2016 Jan 19;7(1):e02039-15. doi: 10.1128/mBio.02039-15.

43.

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland.

Reuter S, Török ME, Holden MT, Reynolds R, Raven KE, Blane B, Donker T, Bentley SD, Aanensen DM, Grundmann H, Feil EJ, Spratt BG, Parkhill J, Peacock SJ.

Genome Res. 2016 Feb;26(2):263-70. doi: 10.1101/gr.196709.115. Epub 2015 Dec 15. Erratum in: Genome Res. 2017 Sep;27(9):1622.

44.

First Step to Success: Applications to Preschoolers at Risk of Developing Autism Spectrum Disorders.

Frey AJ, Small JW, Feil EG, Seeley JR, Walker HM, Forness S.

Educ Train Autism Dev Disabil. 2015 Dec;50(4):397-407. Epub 2016 Jan 19.

45.

Toward a synthesis of genotypic typing and phenotypic inference in the genomics era.

Feil EJ.

Future Microbiol. 2015;10(12):1897-9. doi: 10.2217/fmb.15.113. Epub 2015 Nov 19. No abstract available.

46.

Evolutionary Trade-Offs Underlie the Multi-faceted Virulence of Staphylococcus aureus.

Laabei M, Uhlemann AC, Lowy FD, Austin ED, Yokoyama M, Ouadi K, Feil E, Thorpe HA, Williams B, Perkins M, Peacock SJ, Clarke SR, Dordel J, Holden M, Votintseva AA, Bowden R, Crook DW, Young BC, Wilson DJ, Recker M, Massey RC.

PLoS Biol. 2015 Sep 2;13(9):e1002229. doi: 10.1371/journal.pbio.1002229. eCollection 2015.

47.

The Diversity and Geographical Structure of Orientia tsutsugamushi Strains from Scrub Typhus Patients in Laos.

Phetsouvanh R, Sonthayanon P, Pukrittayakamee S, Paris DH, Newton PN, Feil EJ, Day NP.

PLoS Negl Trop Dis. 2015 Aug 28;9(8):e0004024. doi: 10.1371/journal.pntd.0004024. eCollection 2015. Erratum in: PLoS Negl Trop Dis. 2016 May;10(5):e0004742.

48.

Evolutionary aspects of emerging Lyme disease in Canada.

Ogden NH, Feil EJ, Leighton PA, Lindsay LR, Margos G, Mechai S, Michel P, Moriarty TJ.

Appl Environ Microbiol. 2015 Nov;81(21):7350-9. doi: 10.1128/AEM.01671-15. Epub 2015 Aug 21. Review.

49.

Alternative Splice in Alternative Lice.

Tovar-Corona JM, Castillo-Morales A, Chen L, Olds BP, Clark JM, Reynolds SE, Pittendrigh BR, Feil EJ, Urrutia AO.

Mol Biol Evol. 2015 Oct;32(10):2749-59. doi: 10.1093/molbev/msv151. Epub 2015 Jul 13.

50.

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

Méric G, Miragaia M, de Been M, Yahara K, Pascoe B, Mageiros L, Mikhail J, Harris LG, Wilkinson TS, Rolo J, Lamble S, Bray JE, Jolley KA, Hanage WP, Bowden R, Maiden MC, Mack D, de Lencastre H, Feil EJ, Corander J, Sheppard SK.

Genome Biol Evol. 2015 Apr 16;7(5):1313-28. doi: 10.1093/gbe/evv066.

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