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Items: 7

1.

A spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host.

Feder AF, Kline C, Polacino P, Cottrell M, Kashuba ADM, Keele BF, Hu SL, Petrov DA, Pennings PS, Ambrose Z.

PLoS Pathog. 2017 May 25;13(5):e1006358. doi: 10.1371/journal.ppat.1006358. eCollection 2017 May.

2.

Correction: More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1.

Feder AF, Rhee SY, Holmes SP, Shafer RW, Petrov DA, Pennings PS.

Elife. 2017 Jan 19;6. pii: e24879. doi: 10.7554/eLife.24879. No abstract available.

3.

More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1.

Feder AF, Rhee SY, Holmes SP, Shafer RW, Petrov DA, Pennings PS.

Elife. 2016 Feb 15;5. pii: e10670. doi: 10.7554/eLife.10670. Erratum in: Elife. 2017 Jan 19;6:.

4.

The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens.

Wilson BA, Garud NR, Feder AF, Assaf ZJ, Pennings PS.

Mol Ecol. 2016 Jan;25(1):42-66. doi: 10.1111/mec.13474. Epub 2015 Dec 17. Review.

5.

Identifying signatures of selection in genetic time series.

Feder AF, Kryazhimskiy S, Plotkin JB.

Genetics. 2014 Feb;196(2):509-22. doi: 10.1534/genetics.113.158220. Epub 2013 Dec 6.

6.

LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data.

Feder AF, Petrov DA, Bergland AO.

PLoS One. 2012;7(11):e48588. doi: 10.1371/journal.pone.0048588. Epub 2012 Nov 9.

7.

Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome.

Lohmueller KE, Albrechtsen A, Li Y, Kim SY, Korneliussen T, Vinckenbosch N, Tian G, Huerta-Sanchez E, Feder AF, Grarup N, Jørgensen T, Jiang T, Witte DR, Sandbæk A, Hellmann I, Lauritzen T, Hansen T, Pedersen O, Wang J, Nielsen R.

PLoS Genet. 2011 Oct;7(10):e1002326. doi: 10.1371/journal.pgen.1002326. Epub 2011 Oct 13.

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