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Items: 33

1.

The classic metal-sensing transcription factor MTF1 promotes myogenesis in response to copper.

Tavera-Montañez C, Hainer SJ, Cangussu D, Gordon SJV, Xiao Y, Reyes-Gutierrez P, Imbalzano AN, Navea JG, Fazzio TG, Padilla-Benavides T.

FASEB J. 2019 Nov 5:fj201901606R. doi: 10.1096/fj.201901606R. [Epub ahead of print]

PMID:
31690123
2.

Profiling of Pluripotency Factors in Single Cells and Early Embryos.

Hainer SJ, Bošković A, McCannell KN, Rando OJ, Fazzio TG.

Cell. 2019 May 16;177(5):1319-1329.e11. doi: 10.1016/j.cell.2019.03.014. Epub 2019 Apr 4.

PMID:
30955888
3.

High-Resolution Chromatin Profiling Using CUT&RUN.

Hainer SJ, Fazzio TG.

Curr Protoc Mol Biol. 2019 Apr;126(1):e85. doi: 10.1002/cpmb.85. Epub 2019 Jan 28.

PMID:
30688406
4.

NmeCas9 is an intrinsically high-fidelity genome-editing platform.

Amrani N, Gao XD, Liu P, Edraki A, Mir A, Ibraheim R, Gupta A, Sasaki KE, Wu T, Donohoue PD, Settle AH, Lied AM, McGovern K, Fuller CK, Cameron P, Fazzio TG, Zhu LJ, Wolfe SA, Sontheimer EJ.

Genome Biol. 2018 Dec 5;19(1):214. doi: 10.1186/s13059-018-1591-1.

5.

TIP55, a splice isoform of the KAT5 acetyltransferase, is essential for developmental gene regulation and organogenesis.

Acharya D, Nera B, Milstone ZJ, Bourke L, Yoon Y, Rivera-Pérez JA, Trivedi CM, Fazzio TG.

Sci Rep. 2018 Oct 8;8(1):14908. doi: 10.1038/s41598-018-33213-4.

6.

Diabetes impairs wound healing by Dnmt1-dependent dysregulation of hematopoietic stem cells differentiation towards macrophages.

Yan J, Tie G, Wang S, Tutto A, DeMarco N, Khair L, Fazzio TG, Messina LM.

Nat Commun. 2018 Jan 2;9(1):33. doi: 10.1038/s41467-017-02425-z.

7.

Rlim-Dependent and -Independent Pathways for X Chromosome Inactivation in Female ESCs.

Wang F, McCannell KN, Bošković A, Zhu X, Shin J, Yu J, Gallant J, Byron M, Lawrence JB, Zhu LJ, Jones SN, Rando OJ, Fazzio TG, Bach I.

Cell Rep. 2017 Dec 26;21(13):3691-3699. doi: 10.1016/j.celrep.2017.12.004.

8.

An Embryonic Stem Cell-Specific NuRD Complex Functions through Interaction with WDR5.

Ee LS, McCannell KN, Tang Y, Fernandes N, Hardy WR, Green MR, Chu F, Fazzio TG.

Stem Cell Reports. 2017 Jun 6;8(6):1488-1496. doi: 10.1016/j.stemcr.2017.04.020. Epub 2017 May 18.

9.

KAT-Independent Gene Regulation by Tip60 Promotes ESC Self-Renewal but Not Pluripotency.

Acharya D, Hainer SJ, Yoon Y, Wang F, Bach I, Rivera-Pérez JA, Fazzio TG.

Cell Rep. 2017 Apr 25;19(4):671-679. doi: 10.1016/j.celrep.2017.04.001.

10.

DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells.

Hainer SJ, McCannell KN, Yu J, Ee LS, Zhu LJ, Rando OJ, Fazzio TG.

Elife. 2016 Nov 16;5. pii: e21964. doi: 10.7554/eLife.21964.

11.

Regulation of chromatin structure and cell fate by R-loops.

Fazzio TG.

Transcription. 2016 Aug 7;7(4):121-6. doi: 10.1080/21541264.2016.1198298. Epub 2016 Jun 21. Review.

12.

R loops regulate promoter-proximal chromatin architecture and cellular differentiation.

Chen PB, Chen HV, Acharya D, Rando OJ, Fazzio TG.

Nat Struct Mol Biol. 2015 Dec;22(12):999-1007. doi: 10.1038/nsmb.3122. Epub 2015 Nov 9.

13.

Regulation of Nucleosome Architecture and Factor Binding Revealed by Nuclease Footprinting of the ESC Genome.

Hainer SJ, Fazzio TG.

Cell Rep. 2015 Oct 6;13(1):61-69. doi: 10.1016/j.celrep.2015.08.071. Epub 2015 Sep 24.

14.

Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF.

Hainer SJ, Gu W, Carone BR, Landry BD, Rando OJ, Mello CC, Fazzio TG.

Genes Dev. 2015 Feb 15;29(4):362-78. doi: 10.1101/gad.253534.114.

15.

Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo.

Chen PB, Zhu LJ, Hainer SJ, McCannell KN, Fazzio TG.

BMC Genomics. 2014 Dec 15;15:1104. doi: 10.1186/1471-2164-15-1104.

16.

High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm.

Carone BR, Hung JH, Hainer SJ, Chou MT, Carone DM, Weng Z, Fazzio TG, Rando OJ.

Dev Cell. 2014 Jul 14;30(1):11-22. doi: 10.1016/j.devcel.2014.05.024. Epub 2014 Jul 3.

17.

Hdac6 regulates Tip60-p400 function in stem cells.

Chen PB, Hung JH, Hickman TL, Coles AH, Carey JF, Weng Z, Chu F, Fazzio TG.

Elife. 2013 Dec 3;2:e01557. doi: 10.7554/eLife.01557.

18.

NURDs are required for diversity.

Fazzio TG, Rando OJ.

EMBO J. 2012 May 11;31(14):3036-7. doi: 10.1038/emboj.2012.137. Review. No abstract available.

19.

Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells.

Yildirim O, Li R, Hung JH, Chen PB, Dong X, Ee LS, Weng Z, Rando OJ, Fazzio TG.

Cell. 2011 Dec 23;147(7):1498-510. doi: 10.1016/j.cell.2011.11.054.

20.

Control of embryonic stem cell identity by nucleosome remodeling enzymes.

Fazzio TG, Panning B.

Curr Opin Genet Dev. 2010 Oct;20(5):500-4. doi: 10.1016/j.gde.2010.08.001. Epub 2010 Aug 25. Review.

21.

Condensin complexes regulate mitotic progression and interphase chromatin structure in embryonic stem cells.

Fazzio TG, Panning B.

J Cell Biol. 2010 Feb 22;188(4):491-503. doi: 10.1083/jcb.200908026.

22.

Chromatin regulation Tip(60)s the balance in embryonic stem cell self-renewal.

Fazzio TG, Huff JT, Panning B.

Cell Cycle. 2008 Nov 1;7(21):3302-6. Epub 2008 Nov 5.

23.

An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity.

Fazzio TG, Huff JT, Panning B.

Cell. 2008 Jul 11;134(1):162-74. doi: 10.1016/j.cell.2008.05.031.

24.

Poly(ADP-ribose) polymerase 1 is inhibited by a histone H2A variant, MacroH2A, and contributes to silencing of the inactive X chromosome.

Nusinow DA, Hernández-Muñoz I, Fazzio TG, Shah GM, Kraus WL, Panning B.

J Biol Chem. 2007 Apr 27;282(17):12851-9. Epub 2007 Feb 23.

25.

Two distinct mechanisms of chromatin interaction by the Isw2 chromatin remodeling complex in vivo.

Fazzio TG, Gelbart ME, Tsukiyama T.

Mol Cell Biol. 2005 Nov;25(21):9165-74.

26.

Polyphosphate kinase protects Salmonella enterica from weak organic acid stress.

Price-Carter M, Fazzio TG, Vallbona EI, Roth JR.

J Bacteriol. 2005 May;187(9):3088-99.

27.

Assembly of yeast chromatin using ISWI complexes.

Vary JC Jr, Fazzio TG, Tsukiyama T.

Methods Enzymol. 2004;375:88-102. No abstract available.

PMID:
14870661
28.

Chromatin remodeling in vivo: evidence for a nucleosome sliding mechanism.

Fazzio TG, Tsukiyama T.

Mol Cell. 2003 Nov;12(5):1333-40.

29.

DNA relaxation by human topoisomerase I occurs in the closed clamp conformation of the protein.

Carey JF, Schultz SJ, Sisson L, Fazzio TG, Champoux JJ.

Proc Natl Acad Sci U S A. 2003 May 13;100(10):5640-5. Epub 2003 Apr 23.

30.

Improved background correction for spotted DNA microarrays.

Kooperberg C, Fazzio TG, Delrow JJ, Tsukiyama T.

J Comput Biol. 2002;9(1):55-66.

PMID:
11911795
31.

Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression.

Fazzio TG, Kooperberg C, Goldmark JP, Neal C, Basom R, Delrow J, Tsukiyama T.

Mol Cell Biol. 2001 Oct;21(19):6450-60.

32.

The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p.

Goldmark JP, Fazzio TG, Estep PW, Church GM, Tsukiyama T.

Cell. 2000 Oct 27;103(3):423-33.

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