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Items: 1 to 50 of 59

1.

A polyploid admixed origin of beer yeasts derived from European and Asian wine populations.

Fay JC, Liu P, Ong GT, Dunham MJ, Cromie GA, Jeffery EW, Ludlow CL, Dudley AM.

PLoS Biol. 2019 Mar 5;17(3):e3000147. doi: 10.1371/journal.pbio.3000147. eCollection 2019 Mar.

2.

Mitochondrial DNA and temperature tolerance in lager yeasts.

Baker EP, Peris D, Moriarty RV, Li XC, Fay JC, Hittinger CT.

Sci Adv. 2019 Jan 30;5(1):eaav1869. doi: 10.1126/sciadv.aav1869. eCollection 2019 Jan.

3.

Mitochondria-encoded genes contribute to evolution of heat and cold tolerance in yeast.

Li XC, Peris D, Hittinger CT, Sia EA, Fay JC.

Sci Adv. 2019 Jan 30;5(1):eaav1848. doi: 10.1126/sciadv.aav1848. eCollection 2019 Jan.

4.

Genetic Basis of Variation in Heat and Ethanol Tolerance in Saccharomyces cerevisiae.

Riles L, Fay JC.

G3 (Bethesda). 2019 Jan 9;9(1):179-188. doi: 10.1534/g3.118.200566.

5.

Chronodisruption: An untimely cause of preterm birth?

Reschke L, McCarthy R, Herzog ED, Fay JC, Jungheim ES, England SK.

Best Pract Res Clin Obstet Gynaecol. 2018 Oct;52:60-67. doi: 10.1016/j.bpobgyn.2018.08.001. Epub 2018 Aug 20. Review.

PMID:
30228028
6.

Comparative Genomics Approaches Accurately Predict Deleterious Variants in Plants.

Kono TJY, Lei L, Shih CH, Hoffman PJ, Morrell PL, Fay JC.

G3 (Bethesda). 2018 Oct 3;8(10):3321-3329. doi: 10.1534/g3.118.200563.

7.

Mouse models of preterm birth: suggested assessment and reporting guidelines.

McCarthy R, Martin-Fairey C, Sojka DK, Herzog ED, Jungheim ES, Stout MJ, Fay JC, Mahendroo M, Reese J, Herington JL, Plosa EJ, Shelton EL, England SK.

Biol Reprod. 2018 Nov 1;99(5):922-937. doi: 10.1093/biolre/ioy109.

8.

A multi-phase approach to select new wine yeast strains with enhanced fermentative fitness and glutathione production.

Bonciani T, De Vero L, Mezzetti F, Fay JC, Giudici P.

Appl Microbiol Biotechnol. 2018 Mar;102(5):2269-2278. doi: 10.1007/s00253-018-8773-3. Epub 2018 Jan 22.

PMID:
29356870
9.

Genetic variation and expression changes associated with molybdate resistance from a glutathione producing wine strain of Saccharomyces cerevisiae.

Mezzetti F, Fay JC, Giudici P, De Vero L.

PLoS One. 2017 Jul 6;12(7):e0180814. doi: 10.1371/journal.pone.0180814. eCollection 2017.

10.

Cis-Regulatory Divergence in Gene Expression between Two Thermally Divergent Yeast Species.

Li XC, Fay JC.

Genome Biol Evol. 2017 May 1;9(5):1120-1129. doi: 10.1093/gbe/evx072.

11.

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production.

Peris D, Moriarty RV, Alexander WG, Baker E, Sylvester K, Sardi M, Langdon QK, Libkind D, Wang QM, Bai FY, Leducq JB, Charron G, Landry CR, Sampaio JP, Gonçalves P, Hyma KE, Fay JC, Sato TK, Hittinger CT.

Biotechnol Biofuels. 2017 Mar 27;10:78. doi: 10.1186/s13068-017-0763-7. eCollection 2017.

12.

The Role of Deleterious Substitutions in Crop Genomes.

Kono TJ, Fu F, Mohammadi M, Hoffman PJ, Liu C, Stupar RM, Smith KP, Tiffin P, Fay JC, Morrell PL.

Mol Biol Evol. 2016 Sep;33(9):2307-17. doi: 10.1093/molbev/msw102. Epub 2016 Jun 14.

13.

Independent Origins of Yeast Associated with Coffee and Cacao Fermentation.

Ludlow CL, Cromie GA, Garmendia-Torres C, Sirr A, Hays M, Field C, Jeffery EW, Fay JC, Dudley AM.

Curr Biol. 2016 Apr 4;26(7):965-71. doi: 10.1016/j.cub.2016.02.012. Epub 2016 Mar 24.

14.

Selective photonic disinfection of cell culture using a visible ultrashort pulsed laser.

Tsen SD, Kibler K, Jacobs B, Fay JC, Podolnikova NP, Ugarova TP, Achilefu S, Tsen KT.

IEEE J Sel Top Quantum Electron. 2016 May-Jun;22(3). pii: 7100508. Epub 2015 Nov 9.

15.

Changes in the Relative Abundance of Two Saccharomyces Species from Oak Forests to Wine Fermentations.

Dashko S, Liu P, Volk H, Butinar L, Piškur J, Fay JC.

Front Microbiol. 2016 Feb 24;7:215. doi: 10.3389/fmicb.2016.00215. eCollection 2016.

16.

Divergent MLS1 Promoters Lie on a Fitness Plateau for Gene Expression.

Bergen AC, Olsen GM, Fay JC.

Mol Biol Evol. 2016 May;33(5):1270-9. doi: 10.1093/molbev/msw010. Epub 2016 Jan 18.

17.

Patterns of Gene Conversion in Duplicated Yeast Histones Suggest Strong Selection on a Coadapted Macromolecular Complex.

Scienski K, Fay JC, Conant GC.

Genome Biol Evol. 2015 Nov 11;7(12):3249-58. doi: 10.1093/gbe/evv216.

18.

Cori meets Dobzhansky: Evolution and Gene Expression in St. Louis: A report on the "Evolution and Core Processes in Gene Regulation" meeting in St. Louis, June 25-28, 2015.

Arnosti DN, Fay JC, Zeitlinger J.

Bioessays. 2015 Oct;37(10):1042-4. doi: 10.1002/bies.201500106. Epub 2015 Sep 10.

PMID:
26354485
19.

Evolution of ecological dominance of yeast species in high-sugar environments.

Williams KM, Liu P, Fay JC.

Evolution. 2015 Aug;69(8):2079-93. doi: 10.1111/evo.12707. Epub 2015 Jul 14.

20.

Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides.

Nikolskiy I, Conrad DF, Chun S, Fay JC, Cheverud JM, Lawson HA.

BMC Genomics. 2015 May 28;16:415. doi: 10.1186/s12864-015-1592-3.

21.

Heterochronic meiotic misexpression in an interspecific yeast hybrid.

Swain Lenz D, Riles L, Fay JC.

Mol Biol Evol. 2014 Jun;31(6):1333-42. doi: 10.1093/molbev/msu098. Epub 2014 Mar 7.

22.

The molecular basis of phenotypic variation in yeast.

Fay JC.

Curr Opin Genet Dev. 2013 Dec;23(6):672-7. doi: 10.1016/j.gde.2013.10.005. Epub 2013 Nov 21. Review.

23.

Fine-mapping an association of FSHR with preterm birth in a Finnish population.

Chun S, Plunkett J, Teramo K, Muglia LJ, Fay JC.

PLoS One. 2013 Oct 29;8(10):e78032. doi: 10.1371/journal.pone.0078032. eCollection 2013.

24.

Genomic sequence diversity and population structure of Saccharomyces cerevisiae assessed by RAD-seq.

Cromie GA, Hyma KE, Ludlow CL, Garmendia-Torres C, Gilbert TL, May P, Huang AA, Dudley AM, Fay JC.

G3 (Bethesda). 2013 Dec 9;3(12):2163-71. doi: 10.1534/g3.113.007492.

25.

Disease consequences of human adaptation.

Fay JC.

Appl Transl Genom. 2013 Aug 22;2:42-47. eCollection 2013 Dec 1. Review.

26.
27.

Mixing of vineyard and oak-tree ecotypes of Saccharomyces cerevisiae in North American vineyards.

Hyma KE, Fay JC.

Mol Ecol. 2013 Jun;22(11):2917-30. doi: 10.1111/mec.12155. Epub 2013 Jan 3.

28.

Tapping into yeast diversity.

Fay JC.

Mol Ecol. 2012 Nov;21(22):5387-9.

PMID:
23281494
29.

A noncomplementation screen for quantitative trait alleles in saccharomyces cerevisiae.

Kim HS, Huh J, Riles L, Reyes A, Fay JC.

G3 (Bethesda). 2012 Jul;2(7):753-60. doi: 10.1534/g3.112.002550. Epub 2012 Jul 1.

30.

Divergence of the yeast transcription factor FZF1 affects sulfite resistance.

Engle EK, Fay JC.

PLoS Genet. 2012;8(6):e1002763. doi: 10.1371/journal.pgen.1002763. Epub 2012 Jun 14.

31.

Divergence in wine characteristics produced by wild and domesticated strains of Saccharomyces cerevisiae.

Hyma KE, Saerens SM, Verstrepen KJ, Fay JC.

FEMS Yeast Res. 2011 Nov;11(7):540-51. doi: 10.1111/j.1567-1364.2011.00746.x. Epub 2011 Sep 2.

32.

Evidence for hitchhiking of deleterious mutations within the human genome.

Chun S, Fay JC.

PLoS Genet. 2011 Aug;7(8):e1002240. doi: 10.1371/journal.pgen.1002240. Epub 2011 Aug 25.

33.

Weighing the evidence for adaptation at the molecular level.

Fay JC.

Trends Genet. 2011 Sep;27(9):343-9. doi: 10.1016/j.tig.2011.06.003. Epub 2011 Jul 19.

34.

Primate-specific evolution of noncoding element insertion into PLA2G4C and human preterm birth.

Plunkett J, Doniger S, Morgan T, Haataja R, Hallman M, Puttonen H, Menon R, Kuczynski E, Norwitz E, Snegovskikh V, Palotie A, Peltonen L, Fellman V, DeFranco EA, Chaudhari BP, Oates J, Boutaud O, McGregor TL, McElroy JJ, Teramo K, Borecki I, Fay JC, Muglia LJ.

BMC Med Genomics. 2010 Dec 24;3:62. doi: 10.1186/1755-8794-3-62.

35.

Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence?

Venkataram S, Fay JC.

Genome Biol Evol. 2010;2:851-8. doi: 10.1093/gbe/evq066. Epub 2010 Nov 10.

36.

Preventing preterm birth: the past limitations and new potential of animal models.

Ratajczak CK, Fay JC, Muglia LJ.

Dis Model Mech. 2010 Jul-Aug;3(7-8):407-14. doi: 10.1242/dmm.001701.

37.

Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations.

Will JL, Kim HS, Clarke J, Painter JC, Fay JC, Gasch AP.

PLoS Genet. 2010 Apr 1;6(4):e1000893. doi: 10.1371/journal.pgen.1000893.

38.

A combined-cross analysis reveals genes with drug-specific and background-dependent effects on drug sensitivity in Saccharomyces cerevisiae.

Kim HS, Fay JC.

Genetics. 2009 Nov;183(3):1141-51. doi: 10.1534/genetics.109.108068. Epub 2009 Aug 31.

39.

Identification of deleterious mutations within three human genomes.

Chun S, Fay JC.

Genome Res. 2009 Sep;19(9):1553-61. doi: 10.1101/gr.092619.109. Epub 2009 Jul 14.

40.

Dissecting the pleiotropic consequences of a quantitative trait nucleotide.

Kim HS, Huh J, Fay JC.

FEMS Yeast Res. 2009 Aug;9(5):713-22. doi: 10.1111/j.1567-1364.2009.00516.x. Epub 2009 Apr 23.

41.

Quantification of rare allelic variants from pooled genomic DNA.

Druley TE, Vallania FL, Wegner DJ, Varley KE, Knowles OL, Bonds JA, Robison SW, Doniger SW, Hamvas A, Cole FS, Fay JC, Mitra RD.

Nat Methods. 2009 Apr;6(4):263-5. doi: 10.1038/nmeth.1307. Epub 2009 Mar 1.

42.

A catalog of neutral and deleterious polymorphism in yeast.

Doniger SW, Kim HS, Swain D, Corcuera D, Williams M, Yang SP, Fay JC.

PLoS Genet. 2008 Aug 29;4(8):e1000183. doi: 10.1371/journal.pgen.1000183.

43.

Genetic variation in the cysteine biosynthesis pathway causes sensitivity to pharmacological compounds.

Kim HS, Fay JC.

Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19387-91. Epub 2007 Nov 27.

44.

Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome.

Misulovin Z, Schwartz YB, Li XY, Kahn TG, Gause M, MacArthur S, Fay JC, Eisen MB, Pirrotta V, Biggin MD, Dorsett D.

Chromosoma. 2008 Feb;117(1):89-102. Epub 2007 Oct 27.

45.

Frequent gain and loss of functional transcription factor binding sites.

Doniger SW, Fay JC.

PLoS Comput Biol. 2007 May;3(5):e99. Epub 2007 Apr 19. Erratum in: PLoS Comput Biol. 2009 Feb;5(2). doi: 10.1371/annotation/363b6074-caec-4238-b88f-acbf45de498f.

46.

Evaluating the role of natural selection in the evolution of gene regulation.

Fay JC, Wittkopp PJ.

Heredity (Edinb). 2008 Feb;100(2):191-9. Epub 2007 May 23. Review.

47.

Phylogeny based discovery of regulatory elements.

Gertz J, Fay JC, Cohen BA.

BMC Bioinformatics. 2006 May 22;7:266.

48.

Evidence for domesticated and wild populations of Saccharomyces cerevisiae.

Fay JC, Benavides JA.

PLoS Genet. 2005 Jul;1(1):66-71. Epub 2005 Jul 25.

49.

Hypervariable noncoding sequences in Saccharomyces cerevisiae.

Fay JC, Benavides JA.

Genetics. 2005 Aug;170(4):1575-87. Epub 2005 Jun 14.

50.

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