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Items: 42

1.

Prp8 in a Reduced Spliceosome Lacks a Conserved Toggle that Correlates with Splicing Complexity across Diverse Taxa.

Garside EL, Whelan TA, Stark MR, Rader SD, Fast NM, MacMillan AM.

J Mol Biol. 2019 May 9. pii: S0022-2836(19)30257-8. doi: 10.1016/j.jmb.2019.04.047. [Epub ahead of print]

PMID:
31078556
2.

Microsporidian Introns Retained against a Background of Genome Reduction: Characterization of an Unusual Set of Introns.

Whelan TA, Lee NT, Lee RCH, Fast NM.

Genome Biol Evol. 2019 Jan 1;11(1):263-269. doi: 10.1093/gbe/evy260.

3.

Evolution and Diversity of Pre-mRNA Splicing in Highly Reduced Nucleomorph Genomes.

Wong DK, Grisdale CJ, Fast NM.

Genome Biol Evol. 2018 Jun 1;10(6):1573-1583. doi: 10.1093/gbe/evy111.

4.

Splicing diversity revealed by reduced spliceosomes in C. merolae and other organisms.

Hudson AJ, Stark MR, Fast NM, Russell AG, Rader SD.

RNA Biol. 2015;12(11):1-8. doi: 10.1080/15476286.2015.1094602. Epub 2015 Sep 23. Review.

5.

Dramatically reduced spliceosome in Cyanidioschyzon merolae.

Stark MR, Dunn EA, Dunn WS, Grisdale CJ, Daniele AR, Halstead MR, Fast NM, Rader SD.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1191-200. doi: 10.1073/pnas.1416879112. Epub 2015 Mar 2.

6.

Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages.

Sarkies P, Selkirk ME, Jones JT, Blok V, Boothby T, Goldstein B, Hanelt B, Ardila-Garcia A, Fast NM, Schiffer PM, Kraus C, Taylor MJ, Koutsovoulos G, Blaxter ML, Miska EA.

PLoS Biol. 2015 Feb 10;13(2):e1002061. doi: 10.1371/journal.pbio.1002061. eCollection 2015 Feb.

7.

Microsporidian diversity in soil, sand, and compost of the Pacific Northwest.

Ardila-Garcia AM, Raghuram N, Sihota P, Fast NM.

J Eukaryot Microbiol. 2013 Nov-Dec;60(6):601-8. doi: 10.1111/jeu.12066. Epub 2013 Jul 19.

PMID:
23869987
8.

Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity.

Monier A, Sudek S, Fast NM, Worden AZ.

ISME J. 2013 Sep;7(9):1764-74. doi: 10.1038/ismej.2013.70. Epub 2013 May 2.

9.

Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote.

Grisdale CJ, Bowers LC, Didier ES, Fast NM.

BMC Genomics. 2013 Mar 28;14:207. doi: 10.1186/1471-2164-14-207.

10.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
11.

Microsporidian infection in a free-living marine nematode.

Ardila-Garcia AM, Fast NM.

Eukaryot Cell. 2012 Dec;11(12):1544-51. doi: 10.1128/EC.00228-12. Epub 2012 Oct 19.

12.
13.

Constrained intron structures in a microsporidian.

Lee RC, Gill EE, Roy SW, Fast NM.

Mol Biol Evol. 2010 Sep;27(9):1979-82. doi: 10.1093/molbev/msq087. Epub 2010 Apr 1.

14.

Splicing and transcription differ between spore and intracellular life stages in the parasitic microsporidia.

Gill EE, Lee RC, Corradi N, Grisdale CJ, Limpright VO, Keeling PJ, Fast NM.

Mol Biol Evol. 2010 Jul;27(7):1579-84. doi: 10.1093/molbev/msq050. Epub 2010 Feb 18.

PMID:
20167610
15.

Alpha- and beta-tubulin phylogenies support a close relationship between the microsporidia Brachiola algerae and Antonospora locustae.

Lee RC, Williams BA, Brown AM, Adamson ML, Keeling PJ, Fast NM.

J Eukaryot Microbiol. 2008 Sep-Oct;55(5):388-92. doi: 10.1111/j.1550-7408.2008.00348.x.

PMID:
19017059
16.

ESTs from the microsporidian Edhazardia aedis.

Gill EE, Becnel JJ, Fast NM.

BMC Genomics. 2008 Jun 20;9:296. doi: 10.1186/1471-2164-9-296.

17.

Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities.

Williams BA, Lee RC, Becnel JJ, Weiss LM, Fast NM, Keeling PJ.

BMC Genomics. 2008 Apr 29;9:200. doi: 10.1186/1471-2164-9-200.

18.

Stripped-down DNA repair in a highly reduced parasite.

Gill EE, Fast NM.

BMC Mol Biol. 2007 Mar 20;8:24.

19.

Assessing the microsporidia-fungi relationship: Combined phylogenetic analysis of eight genes.

Gill EE, Fast NM.

Gene. 2006 Jun 21;375:103-9. Epub 2006 Mar 20.

PMID:
16626896
20.

A high frequency of overlapping gene expression in compacted eukaryotic genomes.

Williams BA, Slamovits CH, Patron NJ, Fast NM, Keeling PJ.

Proc Natl Acad Sci U S A. 2005 Aug 2;102(31):10936-41. Epub 2005 Jul 21.

21.

Comparative genomics of microsporidia.

Keeling PJ, Fast NM, Law JS, Williams BA, Slamovits CH.

Folia Parasitol (Praha). 2005 May;52(1-2):8-14. Review.

22.

Comment on "The evolution of modern eukaryotic phytoplankton".

Keeling PJ, Archibald JM, Fast NM, Palmer JD.

Science. 2004 Dec 24;306(5705):2191; author reply 2191. No abstract available.

23.

Genome compaction and stability in microsporidian intracellular parasites.

Slamovits CH, Fast NM, Law JS, Keeling PJ.

Curr Biol. 2004 May 25;14(10):891-6.

24.

Molecular phylogenies of Parabasalia inferred from four protein genes and comparison with rRNA trees.

Gerbod D, Sanders E, Moriya S, Noël C, Takasu H, Fast NM, Delgado-Viscogliosi P, Ohkuma M, Kudo T, Capron M, Palmer JD, Keeling PJ, Viscogliosi E.

Mol Phylogenet Evol. 2004 May;31(2):572-80.

PMID:
15062795
25.

Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies.

Inagaki Y, Susko E, Fast NM, Roger AJ.

Mol Biol Evol. 2004 Jul;21(7):1340-9. Epub 2004 Mar 19.

PMID:
15034136
26.
27.

HIV-specific CD8+ T cell function in children with vertically acquired HIV-1 infection is critically influenced by age and the state of the CD4+ T cell compartment.

Sandberg JK, Fast NM, Jordan KA, Furlan SN, Barbour JD, Fennelly G, Dobroszycki J, Spiegel HM, Wiznia A, Rosenberg MG, Nixon DF.

J Immunol. 2003 Apr 15;170(8):4403-10.

28.

Morphogenesis during division and griseofulvin-induced changes of the microtubular cytoskeleton in the parasitic protist, Trichomonas vaginalis.

Noël C, Gerbod D, Delgado-Viscogliosi P, Fast NM, Younes AB, Chose O, Roseto A, Capron M, Viscogliosi E.

Parasitol Res. 2003 Apr;89(6):487-94. Epub 2003 Jan 21.

PMID:
12658461
29.

Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage.

Saldarriaga JF, McEwan ML, Fast NM, Taylor FJ, Keeling PJ.

Int J Syst Evol Microbiol. 2003 Jan;53(Pt 1):355-65.

PMID:
12656195
30.

Microsporidia: biology and evolution of highly reduced intracellular parasites.

Keeling PJ, Fast NM.

Annu Rev Microbiol. 2002;56:93-116. Epub 2002 Jan 30. Review.

PMID:
12142484
31.

Selective loss of innate CD4(+) V alpha 24 natural killer T cells in human immunodeficiency virus infection.

Sandberg JK, Fast NM, Palacios EH, Fennelly G, Dobroszycki J, Palumbo P, Wiznia A, Grant RM, Bhardwaj N, Rosenberg MG, Nixon DF.

J Virol. 2002 Aug;76(15):7528-34.

32.

Re-examining alveolate evolution using multiple protein molecular phylogenies.

Fast NM, Xue L, Bingham S, Keeling PJ.

J Eukaryot Microbiol. 2002 Jan-Feb;49(1):30-7.

PMID:
11908896
33.

Tubulins in Trichomonas vaginalis: molecular characterization of alpha-tubulin genes, posttranslational modifications, and homology modeling of the tubulin dimer.

Noël C, Gerbod D, Fast NM, Wintjens R, Delgado-Viscogliosi P, Doolittle WF, Viscogliosi E.

J Eukaryot Microbiol. 2001 Nov-Dec;48(6):647-54.

PMID:
11831773
35.
36.

Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids.

Fast NM, Kissinger JC, Roos DS, Keeling PJ.

Mol Biol Evol. 2001 Mar;18(3):418-26.

PMID:
11230543
37.

Quantification of HIV-1-specific T-cell responses at the mucosal cervicovaginal surface.

Shacklett BL, Cu-Uvin S, Beadle TJ, Pace CA, Fast NM, Donahue SM, Caliendo AM, Flanigan TP, Carpenter CC, Nixon DF.

AIDS. 2000 Sep 8;14(13):1911-5.

PMID:
10997394
38.
39.

Trichomonas vaginalis possesses a gene encoding the essential spliceosomal component, PRP8.

Fast NM, Doolittle WF.

Mol Biochem Parasitol. 1999 Apr 30;99(2):275-8. No abstract available.

PMID:
10340492
41.

U2 and U6 snRNA genes in the microsporidian Nosema locustae: evidence for a functional spliceosome.

Fast NM, Roger AJ, Richardson CA, Doolittle WF.

Nucleic Acids Res. 1998 Jul 1;26(13):3202-7.

42.

Selfish DNA: the best defense is a good offense.

Edgell DR, Fast NM, Doolittle WF.

Curr Biol. 1996 Apr 1;6(4):385-8. Review.

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