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Items: 1 to 50 of 102

1.

Viral genome integration of canine papillomavirus 16.

Luff J, Mader M, Rowland P, Britton M, Fass J, Yuan H.

Papillomavirus Res. 2019 Jun;7:88-96. doi: 10.1016/j.pvr.2019.02.002. Epub 2019 Feb 13.

2.

Toward Learned Chemical Perception of Force Field Typing Rules.

Zanette C, Bannan CC, Bayly CI, Fass J, Gilson MK, Shirts MR, Chodera JD, Mobley DL.

J Chem Theory Comput. 2019 Jan 8;15(1):402-423. doi: 10.1021/acs.jctc.8b00821. Epub 2018 Dec 24.

PMID:
30512951
3.

Quantifying Configuration-Sampling Error in Langevin Simulations of Complex Molecular Systems.

Fass J, Sivak DA, Crooks GE, Beauchamp KA, Leimkuhler B, Chodera JD.

Entropy (Basel). 2018 May;20(5). pii: 318. doi: 10.3390/e20050318. Epub 2018 Apr 26.

4.

Biomolecular Simulations under Realistic Macroscopic Salt Conditions.

Ross GA, Rustenburg AS, Grinaway PB, Fass J, Chodera JD.

J Phys Chem B. 2018 May 31;122(21):5466-5486. doi: 10.1021/acs.jpcb.7b11734.

5.

Binding Modes of Ligands Using Enhanced Sampling (BLUES): Rapid Decorrelation of Ligand Binding Modes via Nonequilibrium Candidate Monte Carlo.

Gill SC, Lim NM, Grinaway PB, Rustenburg AS, Fass J, Ross GA, Chodera JD, Mobley DL.

J Phys Chem B. 2018 May 31;122(21):5579-5598. doi: 10.1021/acs.jpcb.7b11820. Epub 2018 Mar 12.

6.

Identifying rhesus macaque gene orthologs using heterospecific human CNV probes.

Ng J, Fass JN, Durbin-Johnson B, Smith DG, Kanthaswamy S.

Genom Data. 2015 Sep 16;6:202-7. doi: 10.1016/j.gdata.2015.09.016. eCollection 2015 Dec.

7.

Refinement of the canine CD1 locus topology and investigation of antibody binding to recombinant canine CD1 isoforms.

Schjaerff M, Keller SM, Fass J, Froenicke L, Grahn RA, Lyons L, Affolter VK, Kristensen AT, Moore PF.

Immunogenetics. 2016 Mar;68(3):191-204. doi: 10.1007/s00251-015-0889-3. Epub 2015 Dec 21.

PMID:
26687789
8.

RNA-seq analyses of changes in the Anopheles gambiae transcriptome associated with resistance to pyrethroids in Kenya: identification of candidate-resistance genes and candidate-resistance SNPs.

Bonizzoni M, Ochomo E, Dunn WA, Britton M, Afrane Y, Zhou G, Hartsel J, Lee MC, Xu J, Githeko A, Fass J, Yan G.

Parasit Vectors. 2015 Sep 17;8:474. doi: 10.1186/s13071-015-1083-z.

9.

Complete genome sequence of canine papillomavirus type 16.

Luff J, Mader M, Britton M, Fass J, Rowland P, Orr C, Schlegel R, Yuan H.

Genome Announc. 2015 May 7;3(3). pii: e00404-15. doi: 10.1128/genomeA.00404-15.

10.

Probing functional polymorphisms in the dengue vector, Aedes aegypti.

Bonizzoni M, Britton M, Marinotti O, Dunn WA, Fass J, James AA.

BMC Genomics. 2013 Oct 29;14:739. doi: 10.1186/1471-2164-14-739.

11.

Multicenter phase II trial to investigate safety and efficacy of gemcitabine combined with cetuximab as adjuvant therapy in pancreatic cancer (ATIP).

Fensterer H, Schade-Brittinger C, Müller HH, Tebbe S, Fass J, Lindig U, Settmacher U, Schmidt WE, Märten A, Ebert MP, Kornmann M, Hofheinz R, Endlicher E, Brendel C, Barth PJ, Bartsch DK, Michl P, Gress TM; Arbeitsgemeinschaft Internistische Onkologie.

Ann Oncol. 2013 Oct;24(10):2576-81. doi: 10.1093/annonc/mdt270. Epub 2013 Jul 29.

PMID:
23897705
12.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, Durbin R, Earl D, Emrich S, Fedotov P, Fonseca NA, Ganapathy G, Gibbs RA, Gnerre S, Godzaridis E, Goldstein S, Haimel M, Hall G, Haussler D, Hiatt JB, Ho IY, Howard J, Hunt M, Jackman SD, Jaffe DB, Jarvis ED, Jiang H, Kazakov S, Kersey PJ, Kitzman JO, Knight JR, Koren S, Lam TW, Lavenier D, Laviolette F, Li Y, Li Z, Liu B, Liu Y, Luo R, Maccallum I, Macmanes MD, Maillet N, Melnikov S, Naquin D, Ning Z, Otto TD, Paten B, Paulo OS, Phillippy AM, Pina-Martins F, Place M, Przybylski D, Qin X, Qu C, Ribeiro FJ, Richards S, Rokhsar DS, Ruby JG, Scalabrin S, Schatz MC, Schwartz DC, Sergushichev A, Sharpe T, Shaw TI, Shendure J, Shi Y, Simpson JT, Song H, Tsarev F, Vezzi F, Vicedomini R, Vieira BM, Wang J, Worley KC, Yin S, Yiu SM, Yuan J, Zhang G, Zhang H, Zhou S, Korf IF.

Gigascience. 2013 Jul 22;2(1):10. doi: 10.1186/2047-217X-2-10.

13.

Identifying human-rhesus macaque gene orthologs using heterospecific SNP probes.

Kanthaswamy S, Ng J, Ross CT, Trask JS, Smith DG, Buffalo VS, Fass JN, Lin D.

Genomics. 2013 Jan;101(1):30-7. doi: 10.1016/j.ygeno.2012.09.001. Epub 2012 Sep 12.

14.

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

You FM, Deal KR, Wang J, Britton MT, Fass JN, Lin D, Dandekar AM, Leslie CA, Aradhya M, Luo MC, Dvorak J.

BMC Genomics. 2012 Jul 31;13:354. doi: 10.1186/1471-2164-13-354.

15.

Multiple clonal MLL fusions in a patient receiving CHOP-based chemotherapy.

Shih SJ, Fass J, Buffalo V, Lin D, Singh SP, Diaz MO, Vaughan AT.

Br J Haematol. 2012 Oct;159(1):50-7. doi: 10.1111/j.1365-2141.2012.09248.x. Epub 2012 Jul 30.

16.

Transcriptome profiling of citrus fruit response to huanglongbing disease.

Martinelli F, Uratsu SL, Albrecht U, Reagan RL, Phu ML, Britton M, Buffalo V, Fass J, Leicht E, Zhao W, Lin D, D'Souza R, Davis CE, Bowman KD, Dandekar AM.

PLoS One. 2012;7(5):e38039. doi: 10.1371/journal.pone.0038039. Epub 2012 May 31.

17.

Synthetic cathinones (bath salts): legal status and patterns of abuse.

Fass JA, Fass AD, Garcia AS.

Ann Pharmacother. 2012 Mar;46(3):436-41. doi: 10.1345/aph.1Q628. Epub 2012 Feb 28. Review.

PMID:
22388331
18.

Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila.

Fass JN, Joshi NA, Couvillion MT, Bowen J, Gorovsky MA, Hamilton EP, Orias E, Hong K, Coyne RS, Eisen JA, Chalker DL, Lin D, Collins K.

G3 (Bethesda). 2011 Nov;1(6):515-22. doi: 10.1534/g3.111.000927. Epub 2011 Nov 1.

19.

Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing.

Monson-Miller J, Sanchez-Mendez DC, Fass J, Henry IM, Tai TH, Comai L.

BMC Genomics. 2012 Feb 14;13:72. doi: 10.1186/1471-2164-13-72.

20.

Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection.

Ahmad R, Parfitt DE, Fass J, Ogundiwin E, Dhingra A, Gradziel TM, Lin D, Joshi NA, Martinez-Garcia PJ, Crisosto CH.

BMC Genomics. 2011 Nov 22;12:569. doi: 10.1186/1471-2164-12-569.

21.

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, Simpson JT, Fonseca NA, Birol İ, Docking TR, Ho IY, Rokhsar DS, Chikhi R, Lavenier D, Chapuis G, Naquin D, Maillet N, Schatz MC, Kelley DR, Phillippy AM, Koren S, Yang SP, Wu W, Chou WC, Srivastava A, Shaw TI, Ruby JG, Skewes-Cox P, Betegon M, Dimon MT, Solovyev V, Seledtsov I, Kosarev P, Vorobyev D, Ramirez-Gonzalez R, Leggett R, MacLean D, Xia F, Luo R, Li Z, Xie Y, Liu B, Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Yin S, Sharpe T, Hall G, Kersey PJ, Durbin R, Jackman SD, Chapman JA, Huang X, DeRisi JL, Caccamo M, Li Y, Jaffe DB, Green RE, Haussler D, Korf I, Paten B.

Genome Res. 2011 Dec;21(12):2224-41. doi: 10.1101/gr.126599.111. Epub 2011 Sep 16.

22.

Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker Discovery(F).

Ono NN, Britton MT, Fass JN, Nicolet CM, Lin D, Tian L.

J Integr Plant Biol. 2011 Oct;53(10):800-13. doi: 10.1111/j.1744-7909.2011.01073.x.

PMID:
21910825
23.
24.

FDA joint collaborations: enhancing patient access to health information and the pharmacist's role.

Fass JA, Garcia AS.

J Am Pharm Assoc (2003). 2011 May-Jun;51(3):328-30. doi: 10.1331/JAPhA.2011.10121. No abstract available.

PMID:
21555283
25.

[An algorithm for postoperative pain management in visceral and thoracic surgery: an observational study].

Klammer F, Gehling M, Klammer A, Fass J, Tryba M.

Zentralbl Chir. 2013 Dec;138(6):616-21. doi: 10.1055/s-0031-1271430. Epub 2011 Apr 29. German.

PMID:
21534181
26.

Discovery of rare mutations in populations: TILLING by sequencing.

Tsai H, Howell T, Nitcher R, Missirian V, Watson B, Ngo KJ, Lieberman M, Fass J, Uauy C, Tran RK, Khan AA, Filkov V, Tai TH, Dubcovsky J, Comai L.

Plant Physiol. 2011 Jul;156(3):1257-68. doi: 10.1104/pp.110.169748. Epub 2011 Apr 29.

27.

Physician-assisted suicide: ongoing challenges for pharmacists.

Fass J, Fass A.

Am J Health Syst Pharm. 2011 May 1;68(9):846-9. doi: 10.2146/ajhp100333. No abstract available.

PMID:
21515870
28.

The FDA Bad Ad Program: implications for NPs.

Fass JA.

Nurse Pract. 2011 Apr;36(4):10-1. doi: 10.1097/01.NPR.0000393977.53716.56. No abstract available.

PMID:
21422974
29.

Prescription drug take-back programs.

Fass JA.

Am J Health Syst Pharm. 2011 Apr 1;68(7):567, 570. doi: 10.2146/ajhp100559. No abstract available.

PMID:
21411797
30.

New Practitioners Forum: Strategies for reinventing journal club.

Stallings A, Borja-Hart N, Fass J.

Am J Health Syst Pharm. 2011 Jan 1;68(1):14-6. doi: 10.2146/ajhp100201. No abstract available.

PMID:
21164060
31.

A label-free differential quantitative mass spectrometry method for the characterization and identification of protein changes during citrus fruit development.

Katz E, Fon M, Eigenheer RA, Phinney BS, Fass JN, Lin D, Sadka A, Blumwald E.

Proteome Sci. 2010 Dec 16;8:68. doi: 10.1186/1477-5956-8-68.

32.

Carisoprodol legal status and patterns of abuse.

Fass JA.

Ann Pharmacother. 2010 Dec;44(12):1962-7. doi: 10.1345/aph.1P339. Epub 2010 Nov 9. Review.

PMID:
21062909
33.

Mitochondrial DNA variant discovery and evaluation in human Cardiomyopathies through next-generation sequencing.

Zaragoza MV, Fass J, Diegoli M, Lin D, Arbustini E.

PLoS One. 2010 Aug 20;5(8):e12295. doi: 10.1371/journal.pone.0012295.

34.

Cost consideration by Medicare Part D plans may promote the use of potentially inappropriate medications.

Golden AG, Fass J, Tewary S, Stefanacci RG, Roos BA.

J Am Geriatr Soc. 2010 May;58(5):979-81. doi: 10.1111/j.1532-5415.2010.02835.x. No abstract available.

PMID:
20722823
35.

Comment: effect of scheduling tramadol as a controlled substance on poison center exposures to tramadol.

Fass J.

Ann Pharmacother. 2010 Sep;44(9):1509. doi: 10.1345/aph.1P064a. Epub 2010 Aug 3. No abstract available.

PMID:
20682851
36.

Stochastic simulation of actin dynamics reveals the role of annealing and fragmentation.

Fass J, Pak C, Bamburg J, Mogilner A.

J Theor Biol. 2008 May 7;252(1):173-83. doi: 10.1016/j.jtbi.2008.01.001. Epub 2008 Jan 11.

37.

Rx package inserts: redesigned with fewer errors in mind.

Fass JA, Seamon MJ, Cytacki J.

J Fam Pract. 2007 Jun;56(6):438-41. No abstract available.

PMID:
17543253
38.

Medical marijuana and the developing role of the pharmacist.

Seamon MJ, Fass JA, Maniscalco-Feichtl M, Abu-Shraie NA.

Am J Health Syst Pharm. 2007 May 15;64(10):1037-44. Review.

PMID:
17494903
39.

Prevalence of the mismatch-repair-deficient phenotype in colonic adenomas arising in HNPCC patients: results of a 5-year follow-up study.

German HNPCC Consortium, Müller A, Beckmann C, Westphal G, Bocker Edmonston T, Friedrichs N, Dietmaier W, Brasch FE, Kloor M, Poremba C, Keller G, Aust DE, Fass J, Büttner R, Becker H, Rüschoff J.

Int J Colorectal Dis. 2006 Oct;21(7):632-41. Epub 2006 Mar 2.

PMID:
16511680
40.

Cutaneous tumors as the initial presentation of non-T, non-B, nonmyeloid CD4+ CD56+ hematolymphoid malignancy in an adolescent boy.

Fass J, Tichy EH, Kraus EW, Herrick JL, Ehsan A, Peterson J, Grimwood RE.

Pediatr Dermatol. 2005 Jan-Feb;22(1):19-22.

PMID:
15660891
41.

Regulating filopodial dynamics through actin-depolymerizing factor/cofilin.

Fass J, Gehler S, Sarmiere P, Letourneau P, Bamburg JR.

Anat Sci Int. 2004 Dec;79(4):173-83. Review.

PMID:
15633455
42.

Tensile force-dependent neurite elicitation via anti-beta1 integrin antibody-coated magnetic beads.

Fass JN, Odde DJ.

Biophys J. 2003 Jul;85(1):623-36. Erratum in: Biophys J. 2004 Se[;87(3):623.

43.

Influence of intraperitoneal therapy with mitomycin C adsorbed on activated carbon on anastomotic and wound healing in rats.

Jansen M, Jansen PL, Fass J, Langejürgen E, Forsch S, Tietze L, Schumpelick V.

Dig Dis Sci. 2002 Sep;47(9):1992-7.

PMID:
12353843
44.

Adult onset of eruptive widespread Spitz's nevi.

Fass J, Grimwood RE, Kraus E, Hyman J.

J Am Acad Dermatol. 2002 May;46(5 Suppl):S142-3.

PMID:
12004294
45.

Influence of postoperative epidural analgesia with bupivacaine on intestinal motility, transit time, and anastomotic healing.

Jansen M, Fass J, Tittel A, Mumme T, Anurov M, Titkova S, Polivoda M, Ottinger A, Schumpelick V.

World J Surg. 2002 Mar;26(3):303-6. Epub 2001 Dec 21.

PMID:
11865365
46.

[Concomitant occurrence of angiomyolipoma, focal nodular hyperplasia, bile duct adenoma, and cavernous hemangioma in the liver].

Langner C, Homayounfar K, Ruten B, Fass J, Rüschoff J.

Pathologe. 2001 Nov;22(6):417-23. German.

PMID:
11766641
47.

Activity and cellular origin of gelatinases in patients with colon and rectal carcinoma differential activity of matrix metalloproteinase-9.

Roeb E, Dietrich CG, Winograd R, Arndt M, Breuer B, Fass J, Schumpelick V, Matern S.

Cancer. 2001 Nov 15;92(10):2680-91.

PMID:
11745204
48.

[Prognostic factors for development of peritoneal carcinosis in stomach carcinoma].

Jansen M, Büchin P, Dreuw B, Fass J, Minkenberg R, Mehring M, Schumpelick V.

Chirurg. 2001 May;72(5):561-5. German.

PMID:
11383068
49.

Colon interposition for esophageal replacement: isoperistaltic or antiperistaltic? Experimental results.

Dreuw B, Fass J, Titkova S, Anurov M, Polivoda M, Ottinger AP, Schumpelick V.

Ann Thorac Surg. 2001 Jan;71(1):303-8.

PMID:
11216766
50.

Endoscopic ultrasonography in the preoperative staging of gastric cancer: accuracy and impact on surgical therapy.

Willis S, Truong S, Gribnitz S, Fass J, Schumpelick V.

Surg Endosc. 2000 Oct;14(10):951-4.

PMID:
11080410

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