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Items: 8

1.

Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria.

Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P, Acinas SG, Kehoe DM, Garczarek L.

Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):E2010-E2019. doi: 10.1073/pnas.1717069115. Epub 2018 Feb 12.

2.

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria.

Farrant GK, Doré H, Cornejo-Castillo FM, Partensky F, Ratin M, Ostrowski M, Pitt FD, Wincker P, Scanlan DJ, Iudicone D, Acinas SG, Garczarek L.

Proc Natl Acad Sci U S A. 2016 Jun 14;113(24):E3365-74. doi: 10.1073/pnas.1524865113. Epub 2016 Jun 2.

3.

WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data.

Farrant GK, Hoebeke M, Partensky F, Andres G, Corre E, Garczarek L.

BMC Bioinformatics. 2015 Sep 3;16:281. doi: 10.1186/s12859-015-0705-y.

4.

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport.

Villar E, Farrant GK, Follows M, Garczarek L, Speich S, Audic S, Bittner L, Blanke B, Brum JR, Brunet C, Casotti R, Chase A, Dolan JR, d'Ortenzio F, Gattuso JP, Grima N, Guidi L, Hill CN, Jahn O, Jamet JL, Le Goff H, Lepoivre C, Malviya S, Pelletier E, Romagnan JB, Roux S, Santini S, Scalco E, Schwenck SM, Tanaka A, Testor P, Vannier T, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans Coordinators, Acinas SG, Bork P, Boss E, de Vargas C, Gorsky G, Ogata H, Pesant S, Sullivan MB, Sunagawa S, Wincker P, Karsenti E, Bowler C, Not F, Hingamp P, Iudicone D.

Science. 2015 May 22;348(6237):1261447. doi: 10.1126/science.1261447.

5.

Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus.

Humily F, Farrant GK, Marie D, Partensky F, Mazard S, Perennou M, Labadie K, Aury JM, Wincker P, Segui AN, Scanlan DJ, Garczarek L.

FEMS Microbiol Ecol. 2014 May;88(2):231-49. doi: 10.1111/1574-6941.12285. Epub 2014 Feb 24.

6.

A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus.

Humily F, Partensky F, Six C, Farrant GK, Ratin M, Marie D, Garczarek L.

PLoS One. 2013 Dec 31;8(12):e84459. doi: 10.1371/journal.pone.0084459. eCollection 2013.

7.

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum.

Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen AE, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L.

Nat Commun. 2013;4:2091. doi: 10.1038/ncomms3091. Erratum in: Nat Commun. 2014;5:3028. Allen, Andrew [corrected to Allen, Andrew E].

PMID:
23820484
8.

Unusual organization, complexity and redundancy at the Escherichia coli hcp-hcr operon promoter.

Chismon DL, Browning DF, Farrant GK, Busby SJ.

Biochem J. 2010 Aug 15;430(1):61-8. doi: 10.1042/BJ20100623.

PMID:
20533909

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