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Items: 42

1.

Scientific Business Abstracts of the 112th Annual Meeting of the Association of Physicians of Great Britain and Ireland.

Chauhan A, Lalor T, Watson S, Adams D, Farrah TE, Anand A, Kimmitt R, Mills NL, Webb DJ, Dhaun N, Kalla R, Adams A, Vatn S, Bonfliglio F, Nimmo E, Kennedy N, Ventham N, Vatn M, Ricanek P, Halfvarson J, Soderhollm J, Pierik M, Torkvist L, Gomollon F, Gut I, Jahnsen J, Satsangi J, Body R, Almashali M, McDowell G, Taylor P, Lacey A, Rees A, Dayan C, Lazarus J, Nelson S, Okosieme O, Corcoran D, Young R, Ciadella P, McCartney P, Bajrangee A, Hennigan B, Collison D, Carrick D, Shaukat A, Good R, Watkins S, McEntegart M, Watt J, Welsh P, Sattar N, McConnachie A, Oldroyd K, Berry C, Parks T, Auckland K, Mentzer AJ, Kado J, Mirabel MM, Kauwe JK, Robson KJ, Mittal B, Steer AC, Hill AVS, Akbar M, Forrester M, Virlan AT, Gilmour A, Wallace C, Paterson C, Reid D, Siebert S, Porter D, Liversidge J, McInnes I, Goodyear C, Athwal V, Pritchett J, Zaitoun A, Irving W, Guha IN, Hanley NA, Hanley KP, Briggs T, Reynolds J, Rice G, Bondet V, Bruce E, Crow Y, Duffy D, Parker B, Bruce I, Martin K, Pritchett J, Aoibheann Mullan M, Llewellyn J, Athwal V, Zeef L, Farrow S, Streuli C, Henderson N, Friedman S, Hanley N, Hanley KP.

QJM. 2018 Dec 1;111(12):920-924. doi: 10.1093/qjmed/hcy193. No abstract available.

PMID:
31222346
2.

Advances in Therapies and Imaging for Systemic Vasculitis.

Farrah TE, Basu N, Dweck M, Calcagno C, Fayad ZA, Dhaun N.

Arterioscler Thromb Vasc Biol. 2019 Aug;39(8):1520-1541. doi: 10.1161/ATVBAHA.118.310957. Epub 2019 Jun 13.

PMID:
31189432
3.

Endothelin Receptor Antagonism Improves Lipid Profiles and Lowers PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) in Patients With Chronic Kidney Disease.

Farrah TE, Anand A, Gallacher PJ, Kimmitt R, Carter E, Dear JW, Mills NL, Webb DJ, Dhaun N.

Hypertension. 2019 Aug;74(2):323-330. doi: 10.1161/HYPERTENSIONAHA.119.12919. Epub 2019 Jun 10.

4.

Retinal fingerprints for precision profiling of cardiovascular risk.

Farrah TE, Webb DJ, Dhaun N.

Nat Rev Cardiol. 2019 Jul;16(7):379-381. doi: 10.1038/s41569-019-0205-2. No abstract available.

PMID:
31089264
5.

Cyclophosphamide-Induced Lung Injury.

Pugh D, Farrah TE, Gallacher PJ, Kluth DC, Dhaun N.

Kidney Int Rep. 2018 Nov 10;4(3):484-486. doi: 10.1016/j.ekir.2018.11.001. eCollection 2019 Mar. No abstract available.

6.

A novel role for myeloid endothelin-B receptors in hypertension.

Czopek A, Moorhouse R, Guyonnet L, Farrah T, Lenoir O, Owen E, van Bragt J, Costello HM, Menolascina F, Baudrie V, Webb DJ, Kluth DC, Bailey MA, Tharaux PL, Dhaun N.

Eur Heart J. 2019 Mar 1;40(9):768-784. doi: 10.1093/eurheartj/ehy881.

7.

Author Correction: Parent-of-origin-specific signatures of de novo mutations.

Goldmann JM, Wong WSW, Pinelli M, Farrah T, Bodian D, Stittrich AB, Glusman G, Vissers LELM, Hoischen A, Roach JC, Vockley JG, Veltman JA, Solomon BD, Gilissen C, Niederhuber JE.

Nat Genet. 2018 Nov;50(11):1615. doi: 10.1038/s41588-018-0226-5.

PMID:
30291356
8.

Endothelin antagonism reduces circulating galectin-3 in patients with proteinuric chronic kidney disease.

Farrah TE, Anand A, Miller-Hodges E, Mills NL, Webb DJ, Dhaun N.

Kidney Int. 2018 Jan;93(1):270. doi: 10.1016/j.kint.2017.10.009. No abstract available.

PMID:
29291821
9.

ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions.

King B, Farrah T, Richards MA, Mundy M, Simeonidis E, Price ND.

Bioinformatics. 2018 May 1;34(9):1594-1596. doi: 10.1093/bioinformatics/btx796.

PMID:
29267848
10.

High-Sensitivity Cardiac Troponin and the Risk Stratification of Patients With Renal Impairment Presenting With Suspected Acute Coronary Syndrome.

Miller-Hodges E, Anand A, Shah ASV, Chapman AR, Gallacher P, Lee KK, Farrah T, Halbesma N, Blackmur JP, Newby DE, Mills NL, Dhaun N.

Circulation. 2018 Jan 30;137(5):425-435. doi: 10.1161/CIRCULATIONAHA.117.030320. Epub 2017 Oct 4.

11.

First-in-Man Demonstration of Direct Endothelin-Mediated Natriuresis and Diuresis.

Hunter RW, Moorhouse R, Farrah TE, MacIntyre IM, Asai T, Gallacher PJ, Kerr D, Melville V, Czopek A, Morrison EE, Ivy JR, Dear JW, Bailey MA, Goddard J, Webb DJ, Dhaun N.

Hypertension. 2017 Jul;70(1):192-200. doi: 10.1161/HYPERTENSIONAHA.116.08832. Epub 2017 May 15.

12.

Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.

Deutsch EW, Sun Z, Campbell DS, Binz PA, Farrah T, Shteynberg D, Mendoza L, Omenn GS, Moritz RL.

J Proteome Res. 2016 Nov 4;15(11):4091-4100. Epub 2016 Sep 12.

13.

The effect of renal dysfunction and haemodialysis on circulating liver specific miR-122.

Rivoli L, Vliegenthart AD, de Potter CM, van Bragt JJ, Tzoumas N, Gallacher P, Farrah TE, Dhaun N, Dear JW.

Br J Clin Pharmacol. 2017 Mar;83(3):584-592. doi: 10.1111/bcp.13136. Epub 2016 Oct 21.

14.

Parent-of-origin-specific signatures of de novo mutations.

Goldmann JM, Wong WS, Pinelli M, Farrah T, Bodian D, Stittrich AB, Glusman G, Vissers LE, Hoischen A, Roach JC, Vockley JG, Veltman JA, Solomon BD, Gilissen C, Niederhuber JE.

Nat Genet. 2016 Aug;48(8):935-9. doi: 10.1038/ng.3597. Epub 2016 Jun 20. Erratum in: Nat Genet. 2018 Nov;50(11):1615.

PMID:
27322544
15.

Symptomatic fracture risk in the renal replacement therapy population.

Dey V, Farrah TE, Traynor JP, Spalding EM, Robertson SE, Geddes CC.

Nephrol Dial Transplant. 2017 Jul 1;32(7):1211-1216. doi: 10.1093/ndt/gfw222.

PMID:
27257273
16.

Pharmacological Effects of RAAS Blockade in Ischemic Nephropathy.

Rivoli L, Di Mario F, Coppolino G, Gigante A, Barbano B, Farrah TE, Rosato E, Fuiano G, Cianci R.

Curr Drug Metab. 2016;17(6):550-8. Review.

PMID:
26892730
17.

Identification of copy number variants in whole-genome data using Reference Coverage Profiles.

Glusman G, Severson A, Dhankani V, Robinson M, Farrah T, Mauldin DE, Stittrich AB, Ament SA, Roach JC, Brunkow ME, Bodian DL, Vockley JG, Shmulevich I, Niederhuber JE, Hood L.

Front Genet. 2015 Feb 17;6:45. doi: 10.3389/fgene.2015.00045. eCollection 2015.

18.

A standardized framing for reporting protein identifications in mzIdentML 1.2.

Seymour SL, Farrah T, Binz PA, Chalkley RJ, Cottrell JS, Searle BC, Tabb DL, Vizcaíno JA, Prieto G, Uszkoreit J, Eisenacher M, Martínez-Bartolomé S, Ghali F, Jones AR.

Proteomics. 2014 Nov;14(21-22):2389-99. doi: 10.1002/pmic.201400080. Epub 2014 Sep 23.

19.

Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics.

Kusebauch U, Deutsch EW, Campbell DS, Sun Z, Farrah T, Moritz RL.

Curr Protoc Bioinformatics. 2014 Jun 17;46:13.25.1-28. doi: 10.1002/0471250953.bi1325s46.

20.

ProteomeXchange provides globally coordinated proteomics data submission and dissemination.

Vizcaíno JA, Deutsch EW, Wang R, Csordas A, Reisinger F, Ríos D, Dianes JA, Sun Z, Farrah T, Bandeira N, Binz PA, Xenarios I, Eisenacher M, Mayer G, Gatto L, Campos A, Chalkley RJ, Kraus HJ, Albar JP, Martinez-Bartolomé S, Apweiler R, Omenn GS, Martens L, Jones AR, Hermjakob H.

Nat Biotechnol. 2014 Mar;32(3):223-6. doi: 10.1038/nbt.2839. No abstract available.

21.

State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project.

Farrah T, Deutsch EW, Omenn GS, Sun Z, Watts JD, Yamamoto T, Shteynberg D, Harris MM, Moritz RL.

J Proteome Res. 2014 Jan 3;13(1):60-75. doi: 10.1021/pr4010037. Epub 2013 Dec 6.

22.

The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis.

Schubert OT, Mouritsen J, Ludwig C, Röst HL, Rosenberger G, Arthur PK, Claassen M, Campbell DS, Sun Z, Farrah T, Gengenbacher M, Maiolica A, Kaufmann SHE, Moritz RL, Aebersold R.

Cell Host Microbe. 2013 May 15;13(5):602-612. doi: 10.1016/j.chom.2013.04.008.

23.

The state of the human proteome in 2012 as viewed through PeptideAtlas.

Farrah T, Deutsch EW, Hoopmann MR, Hallows JL, Sun Z, Huang CY, Moritz RL.

J Proteome Res. 2013 Jan 4;12(1):162-71. doi: 10.1021/pr301012j. Epub 2012 Dec 5.

24.

A Bovine PeptideAtlas of milk and mammary gland proteomes.

Bislev SL, Deutsch EW, Sun Z, Farrah T, Aebersold R, Moritz RL, Bendixen E, Codrea MC.

Proteomics. 2012 Sep;12(18):2895-9. doi: 10.1002/pmic.201200057.

25.

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics.

Hüttenhain R, Soste M, Selevsek N, Röst H, Sethi A, Carapito C, Farrah T, Deutsch EW, Kusebauch U, Moritz RL, Niméus-Malmström E, Rinner O, Aebersold R.

Sci Transl Med. 2012 Jul 11;4(142):142ra94. doi: 10.1126/scitranslmed.3003989.

26.

PASSEL: the PeptideAtlas SRMexperiment library.

Farrah T, Deutsch EW, Kreisberg R, Sun Z, Campbell DS, Mendoza L, Kusebauch U, Brusniak MY, Hüttenhain R, Schiess R, Selevsek N, Aebersold R, Moritz RL.

Proteomics. 2012 Apr;12(8):1170-5. doi: 10.1002/pmic.201100515.

27.

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.

Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz JE, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R.

Mol Cell Proteomics. 2011 Sep;10(9):M110.006353. doi: 10.1074/mcp.M110.006353. Epub 2011 Jun 1.

28.

Using the Human Plasma PeptideAtlas to study human plasma proteins.

Farrah T, Deutsch EW, Aebersold R.

Methods Mol Biol. 2011;728:349-74. doi: 10.1007/978-1-61779-068-3_23.

PMID:
21468960
29.

A guided tour of the Trans-Proteomic Pipeline.

Deutsch EW, Mendoza L, Shteynberg D, Farrah T, Lam H, Tasman N, Sun Z, Nilsson E, Pratt B, Prazen B, Eng JK, Martin DB, Nesvizhskii AI, Aebersold R.

Proteomics. 2010 Mar;10(6):1150-9. doi: 10.1002/pmic.200900375. Review.

30.

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets.

Deutsch EW, Shteynberg D, Lam H, Sun Z, Eng JK, Carapito C, von Haller PD, Tasman N, Mendoza L, Farrah T, Aebersold R.

Proteomics. 2010 Mar;10(6):1190-5. doi: 10.1002/pmic.200900567.

31.

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes.

Picotti P, Rinner O, Stallmach R, Dautel F, Farrah T, Domon B, Wenschuh H, Aebersold R.

Nat Methods. 2010 Jan;7(1):43-6. doi: 10.1038/nmeth.1408. Epub 2009 Dec 6.

PMID:
19966807
32.

A poxvirus-encoded semaphorin induces cytokine production from monocytes and binds to a novel cellular semaphorin receptor, VESPR.

Comeau MR, Johnson R, DuBose RF, Petersen M, Gearing P, VandenBos T, Park L, Farrah T, Buller RM, Cohen JI, Strockbine LD, Rauch C, Spriggs MK.

Immunity. 1998 Apr;8(4):473-82.

33.

The Epstein-Barr virus BARF1 gene encodes a novel, soluble colony-stimulating factor-1 receptor.

Strockbine LD, Cohen JI, Farrah T, Lyman SD, Wagener F, DuBose RF, Armitage RJ, Spriggs MK.

J Virol. 1998 May;72(5):4015-21.

34.

The extracellular domain of the Epstein-Barr virus BZLF2 protein binds the HLA-DR beta chain and inhibits antigen presentation.

Spriggs MK, Armitage RJ, Comeau MR, Strockbine L, Farrah T, Macduff B, Ulrich D, Alderson MR, Müllberg J, Cohen JI.

J Virol. 1996 Aug;70(8):5557-63.

35.

Cyclosporin associated headache.

Steiger MJ, Farrah T, Rolles K, Harvey P, Burroughs AK.

J Neurol Neurosurg Psychiatry. 1994 Oct;57(10):1258-9.

36.

Molecular characterization of a family of ligands for eph-related tyrosine kinase receptors.

Beckmann MP, Cerretti DP, Baum P, Vanden Bos T, James L, Farrah T, Kozlosky C, Hollingsworth T, Shilling H, Maraskovsky E, et al.

EMBO J. 1994 Aug 15;13(16):3757-62.

37.

The TNF receptor superfamily of cellular and viral proteins: activation, costimulation, and death.

Smith CA, Farrah T, Goodwin RG.

Cell. 1994 Mar 25;76(6):959-62. Review. No abstract available.

PMID:
8137429
38.

CD30 antigen, a marker for Hodgkin's lymphoma, is a receptor whose ligand defines an emerging family of cytokines with homology to TNF.

Smith CA, Gruss HJ, Davis T, Anderson D, Farrah T, Baker E, Sutherland GR, Brannan CI, Copeland NG, Jenkins NA, et al.

Cell. 1993 Jul 2;73(7):1349-60.

PMID:
8391931
39.

Molecular characterization of the early activation antigen CD69: a type II membrane glycoprotein related to a family of natural killer cell activation antigens.

Ziegler SF, Ramsdell F, Hjerrild KA, Armitage RJ, Grabstein KH, Hennen KB, Farrah T, Fanslow WC, Shevach EM, Alderson MR.

Eur J Immunol. 1993 Jul;23(7):1643-8.

PMID:
8100776
40.

Emerging cytokine family.

Farrah T, Smith CA.

Nature. 1992 Jul 2;358(6381):26. No abstract available.

PMID:
1377364
41.

Enhanced hematopoietic activity of a human granulocyte/macrophage colony-stimulating factor-interleukin 3 fusion protein.

Curtis BM, Williams DE, Broxmeyer HE, Dunn J, Farrah T, Jeffery E, Clevenger W, deRoos P, Martin U, Friend D, et al.

Proc Natl Acad Sci U S A. 1991 Jul 1;88(13):5809-13.

42.

T2 open reading frame from the Shope fibroma virus encodes a soluble form of the TNF receptor.

Smith CA, Davis T, Wignall JM, Din WS, Farrah T, Upton C, McFadden G, Goodwin RG.

Biochem Biophys Res Commun. 1991 Apr 15;176(1):335-42.

PMID:
1850261

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