Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 7

1.

TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via the MYC Regulatory Network.

Seruggia D, Oti M, Tripathi P, Canver MC, LeBlanc L, Di Giammartino DC, Bullen MJ, Nefzger CM, Sun YBY, Farouni R, Polo JM, Pinello L, Apostolou E, Kim J, Orkin SH, Das PP.

Mol Cell. 2019 Jun 20;74(6):1148-1163.e7. doi: 10.1016/j.molcel.2019.03.025. Epub 2019 Apr 17.

2.

CRISPResso2 provides accurate and rapid genome editing sequence analysis.

Clement K, Rees H, Canver MC, Gehrke JM, Farouni R, Hsu JY, Cole MA, Liu DR, Joung JK, Bauer DE, Pinello L.

Nat Biotechnol. 2019 Mar;37(3):224-226. doi: 10.1038/s41587-019-0032-3. No abstract available.

PMID:
30809026
3.

CRISPR-SURF: discovering regulatory elements by deconvolution of CRISPR tiling screen data.

Hsu JY, Fulco CP, Cole MA, Canver MC, Pellin D, Sher F, Farouni R, Clement K, Guo JA, Biasco L, Orkin SH, Engreitz JM, Lander ES, Joung JK, Bauer DE, Pinello L.

Nat Methods. 2018 Dec;15(12):992-993. doi: 10.1038/s41592-018-0225-6. No abstract available.

4.

AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing.

Clement K, Farouni R, Bauer DE, Pinello L.

Bioinformatics. 2018 Jul 1;34(13):i202-i210. doi: 10.1093/bioinformatics/bty264.

5.

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements.

Pinello L, Farouni R, Yuan GC.

Bioinformatics. 2018 Jun 1;34(11):1930-1933. doi: 10.1093/bioinformatics/bty031.

6.

ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data.

Baskin E, Farouni R, Mathé EA.

Bioinformatics. 2017 Aug 15;33(16):2609. doi: 10.1093/bioinformatics/btx386. No abstract available.

7.

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.

Baskin E, Farouni R, Mathé EA.

Bioinformatics. 2017 Mar 1;33(5):740-742. doi: 10.1093/bioinformatics/btw688. Erratum in: Bioinformatics. 2017 Aug 15;33(16):2609.

Supplemental Content

Loading ...
Support Center