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Items: 47

1.

Commensal Propionibacterium strain UF1 mitigates intestinal inflammation via Th17 cell regulation.

Colliou N, Ge Y, Sahay B, Gong M, Zadeh M, Owen JL, Neu J, Farmerie WG, Alonzo F 3rd, Liu K, Jones DP, Li S, Mohamadzadeh M.

J Clin Invest. 2017 Nov 1;127(11):3970-3986. doi: 10.1172/JCI95376. Epub 2017 Sep 25.

2.

Genome Sequence of Porphyromonas gingivalis Strain A7A1-28.

Xie G, Chastain-Gross RP, Bélanger M, Kumar D, Whitlock JA, Liu L, Farmerie WG, Zeng CL, Daligault HE, Han CS, Brettin TS, Progulske-Fox A.

Genome Announc. 2017 Mar 9;5(10). pii: e00021-17. doi: 10.1128/genomeA.00021-17.

3.

Genome Sequence of Porphyromonas gingivalis Strain 381.

Chastain-Gross RP, Xie G, Bélanger M, Kumar D, Whitlock JA, Liu L, Raines SM, Farmerie WG, Daligault HE, Han CS, Brettin TS, Progulske-Fox A.

Genome Announc. 2017 Jan 12;5(2). pii: e01467-16. doi: 10.1128/genomeA.01467-16.

4.

Role of Host-Driven Mutagenesis in Determining Genome Evolution of Sigma Virus (DMelSV; Rhabdoviridae) in Drosophila melanogaster.

Piontkivska H, Matos LF, Paul S, Scharfenberg B, Farmerie WG, Miyamoto MM, Wayne ML.

Genome Biol Evol. 2016 Oct 5;8(9):2952-2963.

5.

Genome Sequence of Porphyromonas gingivalis Strain AJW4.

Xie G, Chastain-Gross RP, Bélanger M, Kumar D, Whitlock JA, Liu L, Farmerie WG, Daligault HE, Han CS, Brettin TS, Progulske-Fox A.

Genome Announc. 2015 Nov 5;3(6). pii: e01304-15. doi: 10.1128/genomeA.01304-15.

6.

Genome Sequence of Porphyromonas gingivalis Strain A7436.

Chastain-Gross RP, Xie G, Bélanger M, Kumar D, Whitlock JA, Liu L, Farmerie WG, Daligault HE, Han CS, Brettin TS, Progulske-Fox A.

Genome Announc. 2015 Sep 24;3(5). pii: e00927-15. doi: 10.1128/genomeA.00927-15.

7.

SMRT Sequencing of Long Tandem Nucleotide Repeats in SCA10 Reveals Unique Insight of Repeat Expansion Structure.

McFarland KN, Liu J, Landrian I, Godiska R, Shanker S, Yu F, Farmerie WG, Ashizawa T.

PLoS One. 2015 Aug 21;10(8):e0135906. doi: 10.1371/journal.pone.0135906. eCollection 2015.

8.

Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea.

Zhalnina KV, Dias R, Leonard MT, Dorr de Quadros P, Camargo FA, Drew JC, Farmerie WG, Daroub SH, Triplett EW.

PLoS One. 2014 Jul 7;9(7):e101648. doi: 10.1371/journal.pone.0101648. eCollection 2014.

9.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.

Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D.

Nat Biotechnol. 2014 Jul;32(7):656-62. doi: 10.1038/nbt.2906. Epub 2014 Jun 8.

10.

IgM Repertoire Biodiversity is Reduced in HIV-1 Infection and Systemic Lupus Erythematosus.

Yin L, Hou W, Liu L, Cai Y, Wallet MA, Gardner BP, Chang K, Lowe AC, Rodriguez CA, Sriaroon P, Farmerie WG, Sleasman JW, Goodenow MM.

Front Immunol. 2013 Nov 15;4:373. doi: 10.3389/fimmu.2013.00373. eCollection 2013.

11.

Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T).

Leonard MT, Panayotova N, Farmerie WG, Triplett EW, Nicholson WL.

Genome Announc. 2013 Nov 27;1(6). pii: e00985-13. doi: 10.1128/genomeA.00985-13.

12.

Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592.

Nicholson WL, Leonard MT, Fajardo-Cavazos P, Panayotova N, Farmerie WG, Triplett EW, Schuerger AC.

Genome Announc. 2013 Aug 15;1(4). pii: e00548-13. doi: 10.1128/genomeA.00548-13.

13.

High-resolution deep sequencing reveals biodiversity, population structure, and persistence of HIV-1 quasispecies within host ecosystems.

Yin L, Liu L, Sun Y, Hou W, Lowe AC, Gardner BP, Salemi M, Williams WB, Farmerie WG, Sleasman JW, Goodenow MM.

Retrovirology. 2012 Dec 17;9:108. doi: 10.1186/1742-4690-9-108.

14.

Global gene expression of the inner cell mass and trophectoderm of the bovine blastocyst.

Ozawa M, Sakatani M, Yao J, Shanker S, Yu F, Yamashita R, Wakabayashi S, Nakai K, Dobbs KB, Sudano MJ, Farmerie WG, Hansen PJ.

BMC Dev Biol. 2012 Nov 6;12:33. doi: 10.1186/1471-213X-12-33.

15.

Spaceflight transcriptomes: unique responses to a novel environment.

Paul AL, Zupanska AK, Ostrow DT, Zhang Y, Sun Y, Li JL, Shanker S, Farmerie WG, Amalfitano CE, Ferl RJ.

Astrobiology. 2012 Jan;12(1):40-56. doi: 10.1089/ast.2011.0696. Epub 2012 Jan 5.

16.

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis.

Sun Y, Cai Y, Huse SM, Knight R, Farmerie WG, Wang X, Mai V.

Brief Bioinform. 2012 Jan;13(1):107-21. doi: 10.1093/bib/bbr009. Epub 2011 Apr 27.

17.

Genome sequences of Mycoplasma alligatoris A21JP2T and Mycoplasma crocodyli MP145T.

Brown DR, Farmerie WG, May M, Benders GA, Durkin AS, Hlavinka K, Hostetler J, Jackson J, Johnson J, Miller RH, Paralanov V, Radune D, Szczypinski B, Glass JI.

J Bacteriol. 2011 Jun;193(11):2892-3. doi: 10.1128/JB.00309-11. Epub 2011 Apr 1.

18.

The genome of the fire ant Solenopsis invicta.

Wurm Y, Wang J, Riba-Grognuz O, Corona M, Nygaard S, Hunt BG, Ingram KK, Falquet L, Nipitwattanaphon M, Gotzek D, Dijkstra MB, Oettler J, Comtesse F, Shih CJ, Wu WJ, Yang CC, Thomas J, Beaudoing E, Pradervand S, Flegel V, Cook ED, Fabbretti R, Stockinger H, Long L, Farmerie WG, Oakey J, Boomsma JJ, Pamilo P, Yi SV, Heinze J, Goodisman MA, Farinelli L, Harshman K, Hulo N, Cerutti L, Xenarios I, Shoemaker D, Keller L.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5679-84. doi: 10.1073/pnas.1009690108. Epub 2011 Jan 31.

19.

Characterization of San Miguel sea lion virus populations using pyrosequencing-based methods.

Wellehan JF Jr, Yu F, Venn-Watson SK, Jensen ED, Smith CR, Farmerie WG, Nollens HH.

Infect Genet Evol. 2010 Mar;10(2):254-60. doi: 10.1016/j.meegid.2009.11.013. Epub 2009 Dec 1.

PMID:
19931646
20.

A rice kinase-protein interaction map.

Ding X, Richter T, Chen M, Fujii H, Seo YS, Xie M, Zheng X, Kanrar S, Stevenson RA, Dardick C, Li Y, Jiang H, Zhang Y, Yu F, Bartley LE, Chern M, Bart R, Chen X, Zhu L, Farmerie WG, Gribskov M, Zhu JK, Fromm ME, Ronald PC, Song WY.

Plant Physiol. 2009 Mar;149(3):1478-92. doi: 10.1104/pp.108.128298. Epub 2008 Dec 24.

21.

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.

Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.

BMC Genomics. 2008 Jun 30;9:312. doi: 10.1186/1471-2164-9-312.

22.

Construction of a robust microarray from a non-model species (largemouth bass) using pyrosequencing technology.

Garcia-Reyero N, Griffitt RJ, Liu L, Kroll KJ, Farmerie WG, Barber DS, Denslow ND.

J Fish Biol. 2008 Jun 28;72(9):2354-2376.

23.

Pyrosequencing enumerates and contrasts soil microbial diversity.

Roesch LF, Fulthorpe RR, Riva A, Casella G, Hadwin AK, Kent AD, Daroub SH, Camargo FA, Farmerie WG, Triplett EW.

ISME J. 2007 Aug;1(4):283-90. Epub 2007 Jul 5.

24.

Rapid and accurate pyrosequencing of angiosperm plastid genomes.

Moore MJ, Dhingra A, Soltis PS, Shaw R, Farmerie WG, Folta KM, Soltis DE.

BMC Plant Biol. 2006 Aug 25;6:17.

25.

Floral gene resources from basal angiosperms for comparative genomics research.

Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, Schlarbaum SE, Bliss BJ, Zhang X, Tanksley SD, Oppenheimer DG, Soltis PS, Ma H, DePamphilis CW, Leebens-Mack JH.

BMC Plant Biol. 2005 Mar 30;5:5.

26.

Spreading factors of Mycoplasma alligatoris, a flesh-eating mycoplasma.

Brown DR, Zacher LA, Farmerie WG.

J Bacteriol. 2004 Jun;186(12):3922-7.

27.

Capillary DNA sequencing: maximizing the sequence output.

Almira EC, Panayotova N, Farmerie WG.

J Biomol Tech. 2003 Dec;14(4):270-7.

28.

Direct retransformation of yeast with plasmid DNA isolated from single yeast colonies using rolling circle amplification.

Ding X, Snyder AK, Shaw R, Farmerie WG, Song WY.

Biotechniques. 2003 Oct;35(4):774-6, 778-9.

29.

Identification of lysine decarboxylase as a mammalian cell growth inhibitor in Eikenella corrodens: possible role in periodontal disease.

Levine M, Progulske-Fox A, Denslow ND, Farmerie WG, Smith DM, Swearingen WT, Miller FC, Liang Z, Roe BA, Pan HQ.

Microb Pathog. 2001 Apr;30(4):179-92.

PMID:
11312612
30.

Sequencing of beta 2-adrenoceptor gene PCR products using Taq BigDye terminator chemistry results in inaccurate base calling.

Humma LM, Farmerie WG, Wallace MR, Johnson JA.

Biotechniques. 2000 Nov;29(5):962-4, 966, 968 passim. No abstract available.

31.

Characterization of microsatellite loci from the mountain vizcacha Lagidium viscacia and their use for the plains vizcacha Lagostomus maximus.

Walker RS, Farmerie WG, Branch LC.

Mol Ecol. 2000 Oct;9(10):1672-4. No abstract available.

PMID:
11050568
33.

Cloning and sequencing of cDNA of the insecticidal toxin hirsutellin A

Boucias DG, Farmerie WG, Pendland JC.

J Invertebr Pathol. 1998 Nov;72(3):258-61.

PMID:
9784348
34.
36.

Anorectic effects of the cytokine, ciliary neurotropic factor, are mediated by hypothalamic neuropeptide Y: comparison with leptin.

Xu B, Dube MG, Kalra PS, Farmerie WG, Kaibara A, Moldawer LL, Martin D, Kalra SP.

Endocrinology. 1998 Feb;139(2):466-73.

PMID:
9449612
38.

Competitive RNA templates for detection and quantitation of growth factors, cytokines, extracellular matrix components and matrix metalloproteinases by RT-PCR.

Tarnuzzer RW, Macauley SP, Farmerie WG, Caballero S, Ghassemifar MR, Anderson JT, Robinson CP, Grant MB, Humphreys-Beher MG, Franzen L, Peck AB, Schultz GS.

Biotechniques. 1996 Apr;20(4):670-4.

39.

Structure of an inhibitor complex of the proteinase from feline immunodeficiency virus.

Wlodawer A, Gustchina A, Reshetnikova L, Lubkowski J, Zdanov A, Hui KY, Angleton EL, Farmerie WG, Goodenow MM, Bhatt D, et al.

Nat Struct Biol. 1995 Jun;2(6):480-8.

PMID:
7664111
40.

Expression and characterization of recombinant rat placental prolactin-like protein C.

Conliffe PR, Farmerie WG, Charles GD, Buhi WC, Kelly PA, Simmen RC, Shiverick KT.

Mol Cell Endocrinol. 1994 Dec;106(1-2):121-30.

PMID:
7895899
41.

Substrate cleavage by HIV-1 proteinase.

Jupp RA, Richards AD, Phylip LH, Kay J, Konvalinka J, Strop P, Kostka V, Scarborough PE, Farmerie WG, Dunn BM.

Adv Exp Med Biol. 1991;306:461-7. No abstract available.

PMID:
1812743
42.

Cloning, expression and kinetic characterization of the feline immunodeficiency virus proteinase.

Farmerie WG, Goodenow MM, Dunn BM.

Adv Exp Med Biol. 1991;306:511-3. No abstract available.

PMID:
1667452
43.

Sensitive, soluble chromogenic substrates for HIV-1 proteinase.

Richards AD, Phylip LH, Farmerie WG, Scarborough PE, Alvarez A, Dunn BM, Hirel PH, Konvalinka J, Strop P, Pavlickova L, et al.

J Biol Chem. 1990 May 15;265(14):7733-6.

44.

Mutational analysis of human immunodeficiency virus type 1 protease suggests functional homology with aspartic proteinases.

Loeb DD, Hutchison CA 3rd, Edgell MH, Farmerie WG, Swanstrom R.

J Virol. 1989 Jan;63(1):111-21.

45.

Expression and processing of the AIDS virus reverse transcriptase in Escherichia coli.

Farmerie WG, Loeb DD, Casavant NC, Hutchison CA 3rd, Edgell MH, Swanstrom R.

Science. 1987 Apr 17;236(4799):305-8.

PMID:
2436298
46.
47.

Regulation of polyomavirus transcription by large tumor antigen.

Farmerie WG, Folk WR.

Proc Natl Acad Sci U S A. 1984 Nov;81(22):6919-23.

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