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Genetic Diversity and Resistance to Fusarium Head Blight in Synthetic Hexaploid Wheat Derived From Aegilops tauschii and Diverse Triticum turgidum Subspecies.

Szabo-Hever A, Zhang Q, Friesen TL, Zhong S, Elias EM, Cai X, Jin Y, Faris JD, Chao S, Xu SS.

Front Plant Sci. 2018 Dec 11;9:1829. doi: 10.3389/fpls.2018.01829. eCollection 2018.


Fusarium graminearum KP4-like proteins possess root growth-inhibiting activity against wheat and potentially contribute to fungal virulence in seedling rot.

Lu S, Faris JD.

Fungal Genet Biol. 2018 Nov 19;123:1-13. doi: 10.1016/j.fgb.2018.11.002. [Epub ahead of print]


ToxA Is Present in the U.S. Bipolaris sorokiniana Population and Is a Significant Virulence Factor on Wheat Harboring Tsn1.

Friesen TL, Holmes DJ, Bowden RL, Faris JD.

Plant Dis. 2018 Dec;102(12):2446-2452. doi: 10.1094/PDIS-03-18-0521-RE. Epub 2018 Sep 24.


Identification and Validation of a New Source of Low Grain Cadmium Accumulation in Durum Wheat.

Oladzad-Abbasabadi A, Kumar A, Pirseyedi S, Salsman E, Dobrydina M, Poudel RS, AbuHammad WA, Chao S, Faris JD, Elias EM.

G3 (Bethesda). 2018 Mar 2;8(3):923-932. doi: 10.1534/g3.117.300370.


Reference Quality Genome Assemblies of Three Parastagonospora nodorum Isolates Differing in Virulence on Wheat.

Richards JK, Wyatt NA, Liu Z, Faris JD, Friesen TL.

G3 (Bethesda). 2018 Feb 2;8(2):393-399. doi: 10.1534/g3.117.300462.


Molecular manipulation of the mating-type system and development of a new approach for characterizing pathogen virulence in Pyrenophora tritici-repentis.

Ameen G, Kariyawasam G, Shi G, Friesen TL, Faris JD, Ali S, Rasmussen JB, Liu Z.

Fungal Genet Biol. 2017 Dec;109:16-25. doi: 10.1016/j.fgb.2017.10.004. Epub 2017 Oct 16.


Genetic analysis of virulence in the Pyrenophora teres f. teres population BB25×FGOH04Ptt-21.

Koladia VM, Richards JK, Wyatt NA, Faris JD, Brueggeman RS, Friesen TL.

Fungal Genet Biol. 2017 Oct;107:12-19. doi: 10.1016/j.fgb.2017.07.003. Epub 2017 Jul 17.


Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

Avni R, Nave M, Barad O, Baruch K, Twardziok SO, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan KW, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan RP, Sharpe AG, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris JD, Hernandez A, Mikel MA, Levy AA, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz DA, Mayer KFX, Stein N, Ronen G, Peleg Z, Pozniak CJ, Akhunov ED, Distelfeld A.

Science. 2017 Jul 7;357(6346):93-97. doi: 10.1126/science.aan0032.


Characterizing the Pyrenophora teres f. maculata-Barley Interaction Using Pathogen Genetics.

Carlsen SA, Neupane A, Wyatt NA, Richards JK, Faris JD, Xu SS, Brueggeman RS, Friesen TL.

G3 (Bethesda). 2017 Aug 7;7(8):2615-2626. doi: 10.1534/g3.117.043265.


microRNA172 plays a crucial role in wheat spike morphogenesis and grain threshability.

Debernardi JM, Lin H, Chuck G, Faris JD, Dubcovsky J.

Development. 2017 Jun 1;144(11):1966-1975. doi: 10.1242/dev.146399. Epub 2017 Apr 28.


Inverse gene-for-gene interactions contribute additively to tan spot susceptibility in wheat.

Liu Z, Zurn JD, Kariyawasam G, Faris JD, Shi G, Hansen J, Rasmussen JB, Acevedo M.

Theor Appl Genet. 2017 Jun;130(6):1267-1276. doi: 10.1007/s00122-017-2886-4. Epub 2017 Mar 14.


Physical mapping of DNA markers linked to stem rust resistance gene Sr47 in durum wheat.

Klindworth DL, Saini J, Long Y, Rouse MN, Faris JD, Jin Y, Xu SS.

Theor Appl Genet. 2017 Jun;130(6):1135-1154. doi: 10.1007/s00122-017-2875-7. Epub 2017 Mar 12.


Molecular cloning and characterization of two novel genes from hexaploid wheat that encode double PR-1 domains coupled with a receptor-like protein kinase.

Lu S, Faris JD, Edwards MC.

Mol Genet Genomics. 2017 Apr;292(2):435-452. doi: 10.1007/s00438-017-1287-3. Epub 2017 Jan 24.


The hijacking of a receptor kinase-driven pathway by a wheat fungal pathogen leads to disease.

Shi G, Zhang Z, Friesen TL, Raats D, Fahima T, Brueggeman RS, Lu S, Trick HN, Liu Z, Chao W, Frenkel Z, Xu SS, Rasmussen JB, Faris JD.

Sci Adv. 2016 Oct 26;2(10):e1600822. eCollection 2016 Oct.


New Insights into the Roles of Host Gene-Necrotrophic Effector Interactions in Governing Susceptibility of Durum Wheat to Tan Spot and Septoria nodorum Blotch.

Virdi SK, Liu Z, Overlander ME, Zhang Z, Xu SS, Friesen TL, Faris JD.

G3 (Bethesda). 2016 Dec 7;6(12):4139-4150. doi: 10.1534/g3.116.036525.


Genetic analysis of net form net blotch resistance in barley lines CIho 5791 and Tifang against a global collection of P. teres f. teres isolates.

Koladia VM, Faris JD, Richards JK, Brueggeman RS, Chao S, Friesen TL.

Theor Appl Genet. 2017 Jan;130(1):163-173. doi: 10.1007/s00122-016-2801-4. Epub 2016 Oct 12.


Validation of Genome-Wide Association Studies as a Tool to Identify Virulence Factors in Parastagonospora nodorum.

Gao Y, Liu Z, Faris JD, Richards J, Brueggeman RS, Li X, Oliver RP, McDonald BA, Friesen TL.

Phytopathology. 2016 Oct;106(10):1177-1185. Epub 2016 Aug 15.


SnTox1, a Parastagonospora nodorum necrotrophic effector, is a dual-function protein that facilitates infection while protecting from wheat-produced chitinases.

Liu Z, Gao Y, Kim YM, Faris JD, Shelver WL, de Wit PJ, Xu SS, Friesen TL.

New Phytol. 2016 Aug;211(3):1052-64. doi: 10.1111/nph.13959. Epub 2016 Apr 4.


Development of a diagnostic co-dominant marker for stem rust resistance gene Sr47 introgressed from Aegilops speltoides into durum wheat.

Yu G, Klindworth DL, Friesen TL, Faris JD, Zhong S, Rasmussen JB, Xu SS.

Theor Appl Genet. 2015 Dec;128(12):2367-74. doi: 10.1007/s00122-015-2590-1. Epub 2015 Aug 11.


Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat.

Shi G, Zhang Z, Friesen TL, Bansal U, Cloutier S, Wicker T, Rasmussen JB, Faris JD.

Mol Genet Genomics. 2016 Feb;291(1):107-19. doi: 10.1007/s00438-015-1091-x. Epub 2015 Jul 18.


Identification and Characterization of the SnTox6-Snn6 Interaction in the Parastagonospora nodorum-Wheat Pathosystem.

Gao Y, Faris JD, Liu Z, Kim YM, Syme RA, Oliver RP, Xu SS, Friesen TL.

Mol Plant Microbe Interact. 2015 May;28(5):615-25. doi: 10.1094/MPMI-12-14-0396-R.


Analysis of agronomic and domestication traits in a durum × cultivated emmer wheat population using a high-density single nucleotide polymorphism-based linkage map.

Faris JD, Zhang Q, Chao S, Zhang Z, Xu SS.

Theor Appl Genet. 2014 Nov;127(11):2333-48. doi: 10.1007/s00122-014-2380-1. Epub 2014 Sep 4.


Evaluation of a Pyrenophora teres f. teres mapping population reveals multiple independent interactions with a region of barley chromosome 6H.

Shjerve RA, Faris JD, Brueggeman RS, Yan C, Zhu Y, Koladia V, Friesen TL.

Fungal Genet Biol. 2014 Sep;70:104-12. doi: 10.1016/j.fgb.2014.07.012. Epub 2014 Aug 2.


Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H.

Liu Z, Holmes DJ, Faris JD, Chao S, Brueggeman RS, Edwards MC, Friesen TL.

Mol Plant Pathol. 2015 Feb;16(2):188-200. doi: 10.1111/mpp.12172. Epub 2014 Aug 24.


Rewiring the wheat reproductive system to harness heterosis for the next wave of yield improvement.

Gornicki P, Faris JD.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9024-5. doi: 10.1073/pnas.1407956111. Epub 2014 Jun 16. No abstract available.


Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication.

Faris JD, Zhang Z, Chao S.

Gene. 2014 Jun 1;542(2):198-208. doi: 10.1016/j.gene.2014.03.034. Epub 2014 Mar 19.


Molecular and comparative mapping of genes governing spike compactness from wild emmer wheat.

Faris JD, Zhang Z, Garvin DF, Xu SS.

Mol Genet Genomics. 2014 Aug;289(4):641-51. doi: 10.1007/s00438-014-0836-2. Epub 2014 Mar 21.


A dimeric PR-1-type pathogenesis-related protein interacts with ToxA and potentially mediates ToxA-induced necrosis in sensitive wheat.

Lu S, Faris JD, Sherwood R, Friesen TL, Edwards MC.

Mol Plant Pathol. 2014 Sep;15(7):650-63. doi: 10.1111/mpp.12122. Epub 2014 Apr 15.


Genetics of tan spot resistance in wheat.

Faris JD, Liu Z, Xu SS.

Theor Appl Genet. 2013 Sep;126(9):2197-217. doi: 10.1007/s00122-013-2157-y. Epub 2013 Jul 25. Review.


Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat.

Akhunov ED, Sehgal S, Liang H, Wang S, Akhunova AR, Kaur G, Li W, Forrest KL, See D, Simková H, Ma Y, Hayden MJ, Luo M, Faris JD, Dolezel J, Gill BS.

Plant Physiol. 2013 Jan;161(1):252-65. doi: 10.1104/pp.112.205161. Epub 2012 Nov 1.


Dimerization and protease resistance: new insight into the function of PR-1.

Lu S, Faris JD, Sherwood R, Edwards MC.

J Plant Physiol. 2013 Jan 1;170(1):105-10. doi: 10.1016/j.jplph.2012.08.006. Epub 2012 Aug 24.


SnTox5-Snn5: a novel Stagonospora nodorum effector-wheat gene interaction and its relationship with the SnToxA-Tsn1 and SnTox3-Snn3-B1 interactions.

Friesen TL, Chu C, Xu SS, Faris JD.

Mol Plant Pathol. 2012 Dec;13(9):1101-9. doi: 10.1111/j.1364-3703.2012.00819.x. Epub 2012 Jul 25.


Introgression and characterization of a goatgrass gene for a high level of resistance to ug99 stem rust in tetraploid wheat.

Klindworth DL, Niu Z, Chao S, Friesen TL, Jin Y, Faris JD, Cai X, Xu SS.

G3 (Bethesda). 2012 Jun;2(6):665-73. doi: 10.1534/g3.112.002386. Epub 2012 Jun 1.


Stagonospora nodorum: from pathology to genomics and host resistance.

Oliver RP, Friesen TL, Faris JD, Solomon PS.

Annu Rev Phytopathol. 2012;50:23-43. doi: 10.1146/annurev-phyto-081211-173019. Epub 2012 May 1. Review.


Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis.

Tan KC, Ferguson-Hunt M, Rybak K, Waters OD, Stanley WA, Bond CS, Stukenbrock EH, Friesen TL, Faris JD, McDonald BA, Oliver RP.

Mol Plant Microbe Interact. 2012 Apr;25(4):515-22. doi: 10.1094/MPMI-10-11-0273.


The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1.

Liu Z, Zhang Z, Faris JD, Oliver RP, Syme R, McDonald MC, McDonald BA, Solomon PS, Lu S, Shelver WL, Xu S, Friesen TL.

PLoS Pathog. 2012 Jan;8(1):e1002467. doi: 10.1371/journal.ppat.1002467. Epub 2012 Jan 5.


Characterization of plant-fungal interactions involving necrotrophic effector-producing plant pathogens.

Friesen TL, Faris JD.

Methods Mol Biol. 2012;835:191-207. doi: 10.1007/978-1-61779-501-5_12.


Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat.

Zhang Z, Belcram H, Gornicki P, Charles M, Just J, Huneau C, Magdelenat G, Couloux A, Samain S, Gill BS, Rasmussen JB, Barbe V, Faris JD, Chalhoub B.

Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18737-42. doi: 10.1073/pnas.1110552108. Epub 2011 Oct 31. Erratum in: Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1353.


New broad-spectrum resistance to septoria tritici blotch derived from synthetic hexaploid wheat.

Tabib Ghaffary SM, Faris JD, Friesen TL, Visser RG, van der Lee TA, Robert O, Kema GH.

Theor Appl Genet. 2012 Jan;124(1):125-42. doi: 10.1007/s00122-011-1692-7. Epub 2011 Sep 13.


Whole-genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat.

Abeysekara NS, Faris JD, Chao S, McClean PE, Friesen TL.

Phytopathology. 2012 Jan;102(1):94-104. doi: 10.1094/PHYTO-02-11-0040.


Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat.

Chu C, Niu Z, Zhong S, Chao S, Friesen TL, Halley S, Elias EM, Dong Y, Faris JD, Xu SS.

Theor Appl Genet. 2011 Nov;123(7):1107-19. doi: 10.1007/s00122-011-1652-2. Epub 2011 Jul 16.


Variable expression of the Stagonospora nodorum effector SnToxA among isolates is correlated with levels of disease in wheat.

Faris JD, Zhang Z, Rasmussen JB, Friesen TL.

Mol Plant Microbe Interact. 2011 Dec;24(12):1419-26. doi: 10.1094/MPMI-04-11-0094.


Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.).

Lu S, Friesen TL, Faris JD.

Mol Genet Genomics. 2011 Jun;285(6):485-503. doi: 10.1007/s00438-011-0618-z. Epub 2011 Apr 23.


Two putatively homoeologous wheat genes mediate recognition of SnTox3 to confer effector-triggered susceptibility to Stagonospora nodorum.

Zhang Z, Friesen TL, Xu SS, Shi G, Liu Z, Rasmussen JB, Faris JD.

Plant J. 2011 Jan;65(1):27-38. doi: 10.1111/j.1365-313X.2010.04407.x. Epub 2010 Nov 22.


A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens.

Faris JD, Zhang Z, Lu H, Lu S, Reddy L, Cloutier S, Fellers JP, Meinhardt SW, Rasmussen JB, Xu SS, Oliver RP, Simons KJ, Friesen TL.

Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13544-9. doi: 10.1073/pnas.1004090107. Epub 2010 Jul 12.


Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum).

Wiebe K, Harris NS, Faris JD, Clarke JM, Knox RE, Taylor GJ, Pozniak CJ.

Theor Appl Genet. 2010 Oct;121(6):1047-58. doi: 10.1007/s00122-010-1370-1. Epub 2010 Jun 18.


Marker-assisted characterization of durum wheat Langdon-Golden Ball disomic substitution lines.

Xu SS, Chu CG, Chao S, Klindworth DL, Faris JD, Elias EM.

Theor Appl Genet. 2010 May;120(8):1575-85. doi: 10.1007/s00122-010-1277-x. Epub 2010 Feb 7.


Genetic analysis of disease susceptibility contributed by the compatible Tsn1-SnToxA and Snn1-SnTox1 interactions in the wheat-Stagonospora nodorum pathosystem.

Chu CG, Faris JD, Xu SS, Friesen TL.

Theor Appl Genet. 2010 May;120(7):1451-9. doi: 10.1007/s00122-010-1267-z. Epub 2010 Jan 19.


Identification and characterization of a novel host-toxin interaction in the wheat-Stagonospora nodorum pathosystem.

Abeysekara NS, Friesen TL, Keller B, Faris JD.

Theor Appl Genet. 2009 Dec;120(1):117-26. doi: 10.1007/s00122-009-1163-6. Epub 2009 Oct 9.


SnTox3 acts in effector triggered susceptibility to induce disease on wheat carrying the Snn3 gene.

Liu Z, Faris JD, Oliver RP, Tan KC, Solomon PS, McDonald MC, McDonald BA, Nunez A, Lu S, Rasmussen JB, Friesen TL.

PLoS Pathog. 2009 Sep;5(9):e1000581. doi: 10.1371/journal.ppat.1000581. Epub 2009 Sep 18.

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